pycom02g10160
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
N/A
Physical Location & Seq
Forward (+)
7016707 .. 7017745
1039 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 381 bp
ATGGAAGAAGAAGAAGAAGCAGCTTCGAAGCCGGTGCTGCCGGACGCCTTCCTCGATTTTCTGAAGGAGAACGGGCTGGACCCTTCGATTTATTACGAGAGCCAATCGACCCCACGTTACATAAGACTGAAGCCCGGTTTCGAAGATCGAATCGAAGAGATTGAAGCTGAGATCAAGTGCAAGCTTGAAGAAGTGGAATGGTTGCCTGGATTTTATGCTTTTCCGCCGGATGTTCAGATTGCTAACTCAAATGCATACCGGGAGGGAAAGATATATGGAATTGACGCGGCGTCTGGTGCTGCTGTTTCAGCATTGAGTATCTCAGCTGGATCGATCATGTTCTTGACCTTTGTGCTGCTCCTGGTGCTAAGCTCTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltr_RsmB-F

Protein Analysis

127

Amino Acids

13.97

Weight (kDa)

4.27

Isoelectric Point (pI)

46.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 287
AciI CCGC 2 cut(s) 224, 287
AclWI GGATC 1 cut(s) 337
AcuI CTGAAG 2 cut(s) 83, 149
AcyI GRCGYC 2 cut(s) 45, 290
AgsI TTSAA 2 cut(s) 164, 188
AhdI GACNNNNNGTC 1 cut(s) 289
AjnI CCWGG 2 cut(s) 205, 360
AluBI AGCT 5 cut(s) 23, 167, 184, 326, 372
AluI AGCT 5 cut(s) 23, 167, 184, 326, 372
AlwI GGATC 1 cut(s) 337
ApeKI GCWGC 4 cut(s) 20, 37, 299, 355
AspS9I GGNCC 1 cut(s) 79
AsuC2I CCSGG 2 cut(s) 135, 260
AsuII TTCGAA 2 cut(s) 26, 141
AvaII GGWCC 1 cut(s) 79
BbvI GCAGC 4 cut(s) 24, 32, 286, 342
BcgI CGANNNNNNTGC 2 cut(s) 16, 50
BciT130I CCWGG 2 cut(s) 207, 362
BcnI CCSGG 2 cut(s) 135, 260
BisI GCNGC 5 cut(s) 21, 38, 288, 300, 356
BlpI GCTNAGC 1 cut(s) 368
BlsI GCNGC 5 cut(s) 22, 39, 289, 301, 357
Bme1390I CCNGG 4 cut(s) 135, 207, 260, 362
Bme18I GGWCC 1 cut(s) 79
BmeRI GACNNNNNGTC 1 cut(s) 289
BmgT120I GGNCC 1 cut(s) 79
BmiI GGNNCC 1 cut(s) 81
BmrFI CCNGG 4 cut(s) 135, 207, 260, 362
Bpu1102I GCTNAGC 1 cut(s) 368
Bpu14I TTCGAA 2 cut(s) 26, 141
BpuMI CCSGG 2 cut(s) 135, 260
Bsa29I ATCGAT 1 cut(s) 332
BsaHI GRCGYC 2 cut(s) 45, 290
Bse118I RCCGGY 1 cut(s) 31
BseBI CCWGG 2 cut(s) 207, 362
BseCI ATCGAT 1 cut(s) 332
BseGI GGATG 1 cut(s) 235
BseMII CTCAG 2 cut(s) 159, 336
BseXI GCAGC 4 cut(s) 24, 32, 286, 342
Bsh1236I CGCG 1 cut(s) 287
BshVI ATCGAT 1 cut(s) 332
BsiSI CCGG 5 cut(s) 32, 41, 135, 227, 259
Bsp119I TTCGAA 2 cut(s) 26, 141
Bsp143I GATC 4 cut(s) 145, 171, 329, 333
Bsp1720I GCTNAGC 1 cut(s) 368
BspACI CCGC 2 cut(s) 224, 287
BspCNI CTCAG 2 cut(s) 160, 335
BspDI ATCGAT 1 cut(s) 332
BspFNI CGCG 1 cut(s) 287
BspLI GGNNCC 1 cut(s) 81
BspPI GGATC 1 cut(s) 337
BspT104I TTCGAA 2 cut(s) 26, 141
BsrFI RCCGGY 1 cut(s) 31
BssAI RCCGGY 1 cut(s) 31
BssMI GATC 4 cut(s) 145, 171, 329, 333
BssNI GRCGYC 2 cut(s) 45, 290
Bst2UI CCWGG 2 cut(s) 207, 362
Bst6I CTCTTC 1 cut(s) 150
BstACI GRCGYC 2 cut(s) 45, 290
BstBI TTCGAA 2 cut(s) 26, 141
BstC8I GCNNGC 1 cut(s) 182
BstDEI CTNAG 3 cut(s) 168, 322, 368
BstF5I GGATG 1 cut(s) 235
BstFNI CGCG 1 cut(s) 287
BstKTI GATC 4 cut(s) 148, 174, 332, 336
BstMBI GATC 4 cut(s) 145, 171, 329, 333
BstMWI GCNNNNNNNGC 4 cut(s) 37, 296, 308, 364
BstNI CCWGG 2 cut(s) 207, 362
BstSCI CCNGG 4 cut(s) 133, 205, 258, 360
BstUI CGCG 1 cut(s) 287
BstV1I GCAGC 4 cut(s) 24, 32, 286, 342
Bsu15I ATCGAT 1 cut(s) 332
BsuTUI ATCGAT 1 cut(s) 332
BtsCI GGATG 1 cut(s) 235
Cac8I GCNNGC 1 cut(s) 182
Cfr10I RCCGGY 1 cut(s) 31
Cfr13I GGNCC 1 cut(s) 79
ClaI ATCGAT 1 cut(s) 332
CseI GACGC 3 cut(s) 53, 279, 293
CviAII CATG 1 cut(s) 337
CviJI RGCY 9 cut(s) 23, 31, 76, 102, 133, 167, 184, 326, 372
CviKI_1 RGCY 9 cut(s) 23, 31, 76, 102, 133, 167, 184, 326, 372
DdeI CTNAG 3 cut(s) 168, 322, 368
DpnI GATC 4 cut(s) 147, 173, 331, 335
DpnII GATC 4 cut(s) 145, 171, 329, 333
DriI GACNNNNNGTC 1 cut(s) 289
Eam1104I CTCTTC 1 cut(s) 150
Eam1105I GACNNNNNGTC 1 cut(s) 289
EarI CTCTTC 1 cut(s) 150
EciI GGCGGA 1 cut(s) 213
Eco47I GGWCC 1 cut(s) 79
Eco57I CTGAAG 2 cut(s) 83, 149
EcoRII CCWGG 2 cut(s) 205, 360
EcoT22I ATGCAT 1 cut(s) 256
FaeI CATG 1 cut(s) 340
FaiI YATR 7 cut(s) 122, 216, 256, 274, 276, 338, 379
FatI CATG 1 cut(s) 336
Fnu4HI GCNGC 5 cut(s) 21, 38, 288, 300, 356
FokI GGATG 1 cut(s) 242
Fsp4HI GCNGC 5 cut(s) 21, 38, 288, 300, 356
GluI GCNGC 5 cut(s) 21, 38, 288, 300, 356
HapII CCGG 5 cut(s) 32, 41, 135, 227, 259
HgaI GACGC 3 cut(s) 53, 279, 293
Hin1I GRCGYC 2 cut(s) 45, 290
Hin1II CATG 1 cut(s) 340
HindIII AAGCTT 1 cut(s) 182
HinfI GANTC 1 cut(s) 150
HpaII CCGG 5 cut(s) 32, 41, 135, 227, 259
Hpy188I TCNGA 2 cut(s) 63, 237
Hpy188III TCNNGA 1 cut(s) 343
HpyAV CCTTC 3 cut(s) 58, 58, 93
HpyCH4IV ACGT 1 cut(s) 115
HpyCH4V TGCA 2 cut(s) 180, 254
HpyF10VI GCNNNNNNNGC 4 cut(s) 37, 296, 308, 364
HpyF3I CTNAG 3 cut(s) 168, 322, 368
HpySE526I ACGT 1 cut(s) 115
Hsp92I GRCGYC 2 cut(s) 45, 290
Hsp92II CATG 1 cut(s) 340
Kzo9I GATC 4 cut(s) 145, 171, 329, 333
LmnI GCTCC 1 cut(s) 363
Lsp1109I GCAGC 4 cut(s) 24, 32, 286, 342
MaeII ACGT 1 cut(s) 115
MaeIII GTNAC 1 cut(s) 116
MalI GATC 4 cut(s) 147, 173, 331, 335
MboI GATC 4 cut(s) 145, 171, 329, 333
MboII GAAGA 7 cut(s) 17, 20, 23, 26, 155, 167, 200
MluCI AATT 1 cut(s) 279
MnlI CCTC 2 cut(s) 62, 256
Mph1103I ATGCAT 1 cut(s) 256
MspA1I CMGCKG 1 cut(s) 326
MspI CCGG 5 cut(s) 32, 41, 135, 227, 259
MspR9I CCNGG 4 cut(s) 135, 207, 260, 362
MvaI CCWGG 2 cut(s) 207, 362
MvnI CGCG 1 cut(s) 287
MwoI GCNNNNNNNGC 4 cut(s) 37, 296, 308, 364
NciI CCSGG 2 cut(s) 135, 260
NdeII GATC 4 cut(s) 145, 171, 329, 333
NlaIII CATG 1 cut(s) 340
NlaIV GGNNCC 1 cut(s) 81
NsiI ATGCAT 1 cut(s) 256
NspV TTCGAA 2 cut(s) 26, 141
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PfeI GAWTC 1 cut(s) 150
PkrI GCNGC 5 cut(s) 22, 39, 289, 301, 357
Psp6I CCWGG 2 cut(s) 205, 360
PspGI CCWGG 2 cut(s) 205, 360
PspN4I GGNNCC 1 cut(s) 81
PspPI GGNCC 1 cut(s) 79
PvuII CAGCTG 1 cut(s) 326
SatI GCNGC 5 cut(s) 21, 38, 288, 300, 356
Sau3AI GATC 4 cut(s) 145, 171, 329, 333
Sau96I GGNCC 1 cut(s) 79
ScrFI CCNGG 4 cut(s) 135, 207, 260, 362
SetI ASST 7 cut(s) 25, 118, 169, 186, 328, 350, 374
SfuI TTCGAA 2 cut(s) 26, 141
SinI GGWCC 1 cut(s) 79
Sse9I AATT 1 cut(s) 279
SsiI CCGC 2 cut(s) 224, 287
StyD4I CCNGG 4 cut(s) 133, 205, 258, 360
TaiI ACGT 1 cut(s) 118
TaqI TCGA 8 cut(s) 26, 54, 86, 107, 141, 148, 153, 332
TasI AATT 1 cut(s) 279
TauI GCSGC 1 cut(s) 290
TfiI GAWTC 1 cut(s) 150
TseI GCWGC 4 cut(s) 20, 37, 299, 355
VpaK11BI GGWCC 1 cut(s) 79
Zsp2I ATGCAT 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.