Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

7298106 .. 7298748

Gene Structure 643 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGTCAGTGAGAAAAGCAGGTGAAACTGAACCGTCTCAGCCGAAGGAGGGTGGCGGCTCCGCCCAACTGTCCCAGCCAGTCCGAACTTCAAATCCTGCAGAAGATGGAGACAAGAAGAGCACAAGCAGGAGACTGAAGGATGTTGATATATGTGTGCCAATAGTATACGGGACAGTTGCATTCTACCTCGGCAGGAAGGTCTCAGTCCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009909 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031248 GO:0031974 GO:0031981 GO:0032991 GO:0035267 GO:0036211 GO:0040034 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043967 GO:0043981 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048506 GO:0048509 GO:0048510 GO:0048580 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0051239 GO:0051276 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:1901564 GO:1902493 GO:1902494 GO:1902562 GO:1990234 GO:2000026 GO:2000028 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YEATS

Protein Analysis

71

Amino Acids

7.48

Weight (kDa)

9.3

Isoelectric Point (pI)

55.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	8
Acc36I	ACCTGC	1 cut(s)	8
AccI	GTMKAC	1 cut(s)	165
AciI	CCGC	2 cut(s)	54, 60
AcuI	CTGAAG	1 cut(s)	155
AfiI	CCNNNNNNNGG	1 cut(s)	47
AgsI	TTSAA	1 cut(s)	90
AloI	GAACNNNNNNTCC	2 cut(s)	76, 108
Alw21I	GWGCWC	1 cut(s)	122
Alw26I	GTCTC	4 cut(s)	39, 102, 124, 205
AsuHPI	GGTGA	1 cut(s)	32
Bbv12I	GWGCWC	1 cut(s)	122
BccI	CCATC	1 cut(s)	98
BcoDI	GTCTC	4 cut(s)	39, 102, 124, 205
BfmI	CTRYAG	1 cut(s)	96
BfuAI	ACCTGC	1 cut(s)	8
BisI	GCNGC	1 cut(s)	55
BlsI	GCNGC	1 cut(s)	56
BmiI	GGNNCC	1 cut(s)	58
BsaI	GGTCTC	1 cut(s)	205
BsaJI	CCNNGG	1 cut(s)	187
Bsc4I	CCNNNNNNNGG	1 cut(s)	47
Bse1I	ACTGG	1 cut(s)	77
BseDI	CCNNGG	1 cut(s)	187
BseGI	GGATG	1 cut(s)	145
BseLI	CCNNNNNNNGG	1 cut(s)	47
BseMII	CTCAG	1 cut(s)	50
BseNI	ACTGG	1 cut(s)	77
BseYI	CCCAGC	1 cut(s)	72
BsiHKAI	GWGCWC	1 cut(s)	122
BslFI	GGGAC	3 cut(s)	55, 184, 191
BslI	CCNNNNNNNGG	1 cut(s)	47
BsmAI	GTCTC	4 cut(s)	39, 102, 124, 205
BsmBI	CGTCTC	1 cut(s)	39
BsmFI	GGGAC	3 cut(s)	55, 184, 191
BsmI	GAATGC	1 cut(s)	179
Bso31I	GGTCTC	1 cut(s)	205
Bsp1286I	GDGCHC	1 cut(s)	122
BspACI	CCGC	2 cut(s)	54, 60
BspCNI	CTCAG	1 cut(s)	49
BspLI	GGNNCC	1 cut(s)	58
BspMAI	CTGCAG	1 cut(s)	100
BspMI	ACCTGC	1 cut(s)	8
BspQI	GCTCTTC	1 cut(s)	110
BspTNI	GGTCTC	1 cut(s)	205
BsrI	ACTGG	1 cut(s)	77
BssECI	CCNNGG	1 cut(s)	187
BssNAI	GTATAC	1 cut(s)	166
Bst1107I	GTATAC	1 cut(s)	166
Bst4CI	ACNGT	3 cut(s)	33, 69, 175
Bst6I	CTCTTC	1 cut(s)	110
BstDEI	CTNAG	2 cut(s)	36, 202
BstF5I	GGATG	1 cut(s)	145
BstMAI	GTCTC	4 cut(s)	39, 102, 124, 205
BstSFI	CTRYAG	1 cut(s)	96
BstZ17I	GTATAC	1 cut(s)	166
BtsCI	GGATG	1 cut(s)	145
BtsIMutI	CAGTG	1 cut(s)	12
BveI	ACCTGC	1 cut(s)	8
CviJI	RGCY	3 cut(s)	40, 57, 76
CviKI_1	RGCY	3 cut(s)	40, 57, 76
DdeI	CTNAG	2 cut(s)	36, 202
Eam1104I	CTCTTC	1 cut(s)	110
EarI	CTCTTC	1 cut(s)	110
EciI	GGCGGA	1 cut(s)	49
Eco31I	GGTCTC	1 cut(s)	205
Eco57I	CTGAAG	1 cut(s)	155
Esp3I	CGTCTC	1 cut(s)	39
FaiI	YATR	4 cut(s)	149, 151, 166, 211
FaqI	GGGAC	3 cut(s)	55, 184, 191
FblI	GTMKAC	1 cut(s)	165
Fnu4HI	GCNGC	1 cut(s)	55
FokI	GGATG	1 cut(s)	152
Fsp4HI	GCNGC	1 cut(s)	55
GluI	GCNGC	1 cut(s)	55
GsaI	CCCAGC	1 cut(s)	76
HphI	GGTGA	1 cut(s)	32
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188I	TCNGA	1 cut(s)	83
Hpy8I	GTNNAC	1 cut(s)	166
HpyAV	CCTTC	3 cut(s)	37, 130, 190
HpyCH4III	ACNGT	3 cut(s)	33, 69, 175
HpyCH4V	TGCA	2 cut(s)	98, 179
HpyF3I	CTNAG	2 cut(s)	36, 202
LguI	GCTCTTC	1 cut(s)	110
LmnI	GCTCC	1 cut(s)	62
LpnPI	CCDG	6 cut(s)	3, 86, 90, 108, 112, 178
MboII	GAAGA	2 cut(s)	113, 127
MhlI	GDGCHC	1 cut(s)	122
MnlI	CCTC	2 cut(s)	40, 197
Mva1269I	GAATGC	1 cut(s)	179
NlaIV	GGNNCC	1 cut(s)	58
NmeAIII	GCCGAG	1 cut(s)	168
PaqCI	CACCTGC	1 cut(s)	8
PciSI	GCTCTTC	1 cut(s)	110
PctI	GAATGC	1 cut(s)	179
PkrI	GCNGC	1 cut(s)	56
PspFI	CCCAGC	1 cut(s)	72
PspN4I	GGNNCC	1 cut(s)	58
PstI	CTGCAG	1 cut(s)	100
SapI	GCTCTTC	1 cut(s)	110
SatI	GCNGC	1 cut(s)	55
SduI	GDGCHC	1 cut(s)	122
SetI	ASST	3 cut(s)	22, 189, 201
SfcI	CTRYAG	1 cut(s)	96
SsiI	CCGC	2 cut(s)	54, 60
TaaI	ACNGT	3 cut(s)	33, 69, 175
TauI	GCSGC	1 cut(s)	57
TscAI	CASTG	1 cut(s)	12
TspRI	CASTG	1 cut(s)	12
XmiI	GTMKAC	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.