pycom02g10690

cellular response to nitrogen starvation

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
N/A
Physical Location & Seq
Forward (+)
7442834 .. 7443829
996 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 363 bp
ATGAGCGAGAACACGAGGAAGTTCTATTTAGAGAGGTACAAGCAGTTATATGGTAATCTTTCAGAAGAACAACGCACTTGCACGGATGCTAGACAGTTGAGGGAGAAGCGTGCTGATTATATACCAGTGAGTGTGGAGAAGGATCCAAGGGCAGACAGTGACGTTCCTGACATTGGTGTAAAAAAATACCATGTCCCCCGTCAGAAAACTCTTGGAGAATTTGTTGATTTGATTCAGATGGATATTGCGGTCAGTAAAACATTCCATGTGCGTGTCTTCTGCAAGAACACTGAACTTCCTGCCGGTGCCTCGATGTCTGCAATTGACGACGAATTTAAAGATGGAGATGGTTTCTTCGGTTGA
Functional Annotation

Protein Analysis

121

Amino Acids

13.8

Weight (kDa)

5.7

Isoelectric Point (pI)

41.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATG8 PF02991 27 - 119 1.5e-13 Autophagy protein Atg8 ubiquitin like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 305
AciI CCGC 1 cut(s) 248
AclWI GGATC 2 cut(s) 137, 150
AcsI RAATTY 2 cut(s) 218, 332
AfaI GTAC 1 cut(s) 38
AfiI CCNNNNNNNGG 1 cut(s) 173
AlwI GGATC 2 cut(s) 137, 150
ApoI RAATTY 2 cut(s) 218, 332
BamHI GGATCC 1 cut(s) 142
BanI GGYRCC 1 cut(s) 305
BauI CACGAG 1 cut(s) 13
BbsI GAAGAC 1 cut(s) 268
BccI CCATC 3 cut(s) 232, 335, 341
BfaI CTAG 1 cut(s) 90
BmiI GGNNCC 2 cut(s) 144, 307
BmsI GCATC 1 cut(s) 76
BpiI GAAGAC 1 cut(s) 268
BsaJI CCNNGG 1 cut(s) 146
BsaXI ACNNNNNCTCC 2 cut(s) 207, 237
Bsc4I CCNNNNNNNGG 1 cut(s) 173
Bse118I RCCGGY 1 cut(s) 302
Bse1I ACTGG 1 cut(s) 125
BseDI CCNNGG 1 cut(s) 146
BseGI GGATG 1 cut(s) 91
BseLI CCNNNNNNNGG 1 cut(s) 173
BseNI ACTGG 1 cut(s) 125
BshNI GGYRCC 1 cut(s) 305
BsiSI CCGG 1 cut(s) 303
BslFI GGGAC 1 cut(s) 179
BslI CCNNNNNNNGG 1 cut(s) 173
BsmFI GGGAC 1 cut(s) 179
Bsp143I GATC 1 cut(s) 142
BspACI CCGC 1 cut(s) 248
BspLI GGNNCC 2 cut(s) 144, 307
BspPI GGATC 2 cut(s) 137, 150
BspT107I GGYRCC 1 cut(s) 305
BsrFI RCCGGY 1 cut(s) 302
BsrI ACTGG 1 cut(s) 125
BssAI RCCGGY 1 cut(s) 302
BssECI CCNNGG 1 cut(s) 146
BssMI GATC 1 cut(s) 142
BssSI CACGAG 1 cut(s) 13
BssT1I CCWWGG 1 cut(s) 146
Bst2BI CACGAG 1 cut(s) 13
Bst4CI ACNGT 2 cut(s) 96, 158
BstC8I GCNNGC 1 cut(s) 111
BstF5I GGATG 1 cut(s) 91
BstKTI GATC 1 cut(s) 145
BstMBI GATC 1 cut(s) 142
BstV2I GAAGAC 1 cut(s) 268
BstX2I RGATCY 1 cut(s) 142
BstYI RGATCY 1 cut(s) 142
BtsCI GGATG 1 cut(s) 91
BtsIMutI CAGTG 3 cut(s) 132, 163, 288
Cac8I GCNNGC 1 cut(s) 111
Cfr10I RCCGGY 1 cut(s) 302
Csp6I GTAC 1 cut(s) 37
CviAII CATG 2 cut(s) 191, 266
CviQI GTAC 1 cut(s) 37
DpnI GATC 1 cut(s) 144
DpnII GATC 1 cut(s) 142
DraI TTTAAA 1 cut(s) 337
Eco130I CCWWGG 1 cut(s) 146
EcoT14I CCWWGG 1 cut(s) 146
ErhI CCWWGG 1 cut(s) 146
FaeI CATG 2 cut(s) 194, 269
FaiI YATR 6 cut(s) 49, 51, 120, 122, 192, 267
FaqI GGGAC 1 cut(s) 179
FatI CATG 2 cut(s) 190, 265
FokI GGATG 1 cut(s) 98
FspBI CTAG 1 cut(s) 90
HapII CCGG 1 cut(s) 303
Hin1II CATG 2 cut(s) 194, 269
HinfI GANTC 1 cut(s) 232
HpaII CCGG 1 cut(s) 303
Hpy188I TCNGA 3 cut(s) 64, 204, 237
Hpy188III TCNNGA 1 cut(s) 167
Hpy99I CGWCG 1 cut(s) 332
HpyAV CCTTC 1 cut(s) 133
HpyCH4III ACNGT 2 cut(s) 96, 158
HpyCH4IV ACGT 1 cut(s) 162
HpyCH4V TGCA 3 cut(s) 81, 282, 320
HpySE526I ACGT 1 cut(s) 162
Hsp92II CATG 2 cut(s) 194, 269
Kzo9I GATC 1 cut(s) 142
LpnPI CCDG 4 cut(s) 138, 180, 312, 316
LweI GCATC 1 cut(s) 76
MaeI CTAG 1 cut(s) 90
MaeII ACGT 1 cut(s) 162
MaeIII GTNAC 1 cut(s) 158
MalI GATC 1 cut(s) 144
MboI GATC 1 cut(s) 142
MboII GAAGA 3 cut(s) 77, 268, 346
MfeI CAATTG 1 cut(s) 321
MflI RGATCY 1 cut(s) 142
MluCI AATT 3 cut(s) 218, 321, 332
MnlI CCTC 4 cut(s) 9, 27, 93, 319
MseI TTAA 1 cut(s) 336
MslI CAYNNNNRTG 1 cut(s) 270
MspI CCGG 1 cut(s) 303
MunI CAATTG 1 cut(s) 321
NdeII GATC 1 cut(s) 142
NlaIII CATG 2 cut(s) 194, 269
NlaIV GGNNCC 2 cut(s) 144, 307
NmuCI GTSAC 1 cut(s) 158
PfeI GAWTC 1 cut(s) 232
PspN4I GGNNCC 2 cut(s) 144, 307
PsuI RGATCY 1 cut(s) 142
RsaI GTAC 1 cut(s) 38
RsaNI GTAC 1 cut(s) 37
RseI CAYNNNNRTG 1 cut(s) 270
SaqAI TTAA 1 cut(s) 336
Sau3AI GATC 1 cut(s) 142
SetI ASST 2 cut(s) 38, 165
SfaNI GCATC 1 cut(s) 76
SmiMI CAYNNNNRTG 1 cut(s) 270
Sse9I AATT 3 cut(s) 218, 321, 332
SsiI CCGC 1 cut(s) 248
SspMI CTAG 1 cut(s) 90
StyI CCWWGG 1 cut(s) 146
TaaI ACNGT 2 cut(s) 96, 158
TaiI ACGT 1 cut(s) 165
TaqI TCGA 1 cut(s) 311
TasI AATT 3 cut(s) 218, 321, 332
TfiI GAWTC 1 cut(s) 232
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TscAI CASTG 3 cut(s) 132, 163, 295
TseFI GTSAC 1 cut(s) 158
Tsp45I GTSAC 1 cut(s) 158
TspGWI ACGGA 1 cut(s) 98
TspRI CASTG 3 cut(s) 132, 163, 295
XapI RAATTY 2 cut(s) 218, 332
XspI CTAG 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.