pycom02g10740

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
N/A
Physical Location & Seq
Forward (+)
7537133 .. 7538310
1178 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 750 bp
ATGATAATGGTGATCTGTCGGGTTGGGGATGACTTGGGATTTTGCATTGAGCTCAAGTTCTTAAGGCAGAAGATGGAAACTAAGGCTAGTGTTTTGTTTGGAGTTTTTTTGGGTCTTGCTTTTGTGTTGAGTTCATCTTTGGTTGGTGGGATCAAAGGTTCTGATGGAGTAGATGGTGGCATTGCTGCGATTAGTAATGCTACTACTACCGTTGTCCACAAGCTGACTACTTCATCTGGTGATGAAGGTTTGGACAAAAGCAAGAACTATCAAAATGGAGGTGGAAGTGGAGGCGGTGGCGGAGGTGGAGGTGGAAATGGTGGTCAAGGTGGGGGAAGTGGCGGAGGAGCAGGTGGTGGGAGTGGTGGGGCTACTGGAGCTGGCAAAGGGAATGGAAAAGGTAGAGGCCACAAGAGAAGGCATGGAAAAGGAAAGGGTAAAGGAGGAGGTAGCGGCGGTGGAGGTGGCGGTGGAGGAGGTGGAGGTGGAGGTGGAGGTGGAGGGGGTGGAGGGAATGGTAAAGGCCACGGATGGGGTGGAGGAAGTGGAGGCGGCGGTGGAGGTGGCGGAGGTGCTAGTGGAGGTGGTGGTGGTGGTGGTGGTGGAGGTGGGGGTGCCGAAATCAATAGGAGGCAGGAAGGGAAACCCTTGAGGAAATGCAAATGGGTTGACCATGCACACTGCATGGACCATCAACTCTGTAAAGCGTGCAAGATATTGGACTCCAAATCACTTTCTTCAATAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

250

Amino Acids

22.9

Weight (kDa)

9.7

Isoelectric Point (pI)

49.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 341
Acc36I ACCTGC 1 cut(s) 341
AccB1I GGYRCC 1 cut(s) 614
AciI CCGC 9 cut(s) 294, 300, 342, 453, 456, 468, 552, 555, 567
AclWI GGATC 1 cut(s) 158
AfiI CCNNNNNNNGG 1 cut(s) 532
AflII CTTAAG 1 cut(s) 61
AgsI TTSAA 1 cut(s) 741
AloI GAACNNNNNNTCC 2 cut(s) 142, 174
AluBI AGCT 3 cut(s) 52, 223, 380
AluI AGCT 3 cut(s) 52, 223, 380
Alw21I GWGCWC 1 cut(s) 54
AlwI GGATC 1 cut(s) 158
AoxI GGCC 2 cut(s) 406, 523
ApeKI GCWGC 1 cut(s) 185
AspS9I GGNCC 1 cut(s) 688
AsuHPI GGTGA 2 cut(s) 22, 251
AvaII GGWCC 1 cut(s) 688
BanI GGYRCC 1 cut(s) 614
BanII GRGCYC 1 cut(s) 54
Bbv12I GWGCWC 1 cut(s) 54
BbvI GCAGC 1 cut(s) 172
BccI CCATC 5 cut(s) 67, 158, 167, 525, 699
BfaI CTAG 2 cut(s) 87, 576
BfrI CTTAAG 1 cut(s) 61
BfuAI ACCTGC 1 cut(s) 341
BisI GCNGC 3 cut(s) 186, 454, 553
BlsI GCNGC 3 cut(s) 187, 455, 554
Bme18I GGWCC 1 cut(s) 688
BmgT120I GGNCC 1 cut(s) 688
BmiI GGNNCC 1 cut(s) 616
BpmI CTGGAG 1 cut(s) 396
BpuEI CTTGAG 2 cut(s) 38, 670
BsaJI CCNNGG 1 cut(s) 526
Bsc4I CCNNNNNNNGG 1 cut(s) 532
Bse1I ACTGG 1 cut(s) 379
Bse3DI GCAATG 1 cut(s) 180
BseDI CCNNGG 1 cut(s) 526
BseGI GGATG 2 cut(s) 34, 536
BseLI CCNNNNNNNGG 1 cut(s) 532
BseMI GCAATG 1 cut(s) 180
BseNI ACTGG 1 cut(s) 379
BseRI GAGGAG 3 cut(s) 360, 459, 489
BseXI GCAGC 1 cut(s) 172
BshFI GGCC 2 cut(s) 408, 525
BshNI GGYRCC 1 cut(s) 614
BsiHKAI GWGCWC 1 cut(s) 54
BslI CCNNNNNNNGG 1 cut(s) 532
BsnI GGCC 2 cut(s) 408, 525
Bsp1286I GDGCHC 1 cut(s) 54
Bsp143I GATC 2 cut(s) 12, 150
BspACI CCGC 9 cut(s) 294, 300, 342, 453, 456, 468, 552, 555, 567
BspANI GGCC 2 cut(s) 408, 525
BspLI GGNNCC 1 cut(s) 616
BspMI ACCTGC 1 cut(s) 341
BspPI GGATC 1 cut(s) 158
BspT107I GGYRCC 1 cut(s) 614
BspTI CTTAAG 1 cut(s) 61
BsrDI GCAATG 1 cut(s) 180
BsrI ACTGG 1 cut(s) 379
BssECI CCNNGG 1 cut(s) 526
BssMI GATC 2 cut(s) 12, 150
Bst4CI ACNGT 1 cut(s) 211
BstAFI CTTAAG 1 cut(s) 61
BstC8I GCNNGC 2 cut(s) 382, 709
BstDEI CTNAG 1 cut(s) 81
BstDSI CCRYGG 1 cut(s) 526
BstF5I GGATG 2 cut(s) 34, 536
BstKTI GATC 2 cut(s) 15, 153
BstMBI GATC 2 cut(s) 12, 150
BstMWI GCNNNNNNNGC 1 cut(s) 377
BstV1I GCAGC 1 cut(s) 172
BsuRI GGCC 2 cut(s) 408, 525
BtgI CCRYGG 1 cut(s) 526
BtsCI GGATG 2 cut(s) 34, 536
BtsI GCAGTG 1 cut(s) 679
BtsIMutI CAGTG 1 cut(s) 679
BveI ACCTGC 1 cut(s) 341
Cac8I GCNNGC 2 cut(s) 382, 709
Cfr13I GGNCC 1 cut(s) 688
CviAII CATG 3 cut(s) 422, 674, 685
CviJI RGCY 7 cut(s) 52, 86, 223, 371, 380, 408, 525
CviKI_1 RGCY 7 cut(s) 52, 86, 223, 371, 380, 408, 525
DdeI CTNAG 1 cut(s) 81
DpnI GATC 2 cut(s) 14, 152
DpnII GATC 2 cut(s) 12, 150
EciI GGCGGA 3 cut(s) 315, 357, 582
Ecl136II GAGCTC 1 cut(s) 52
Eco24I GRGCYC 1 cut(s) 54
Eco47I GGWCC 1 cut(s) 688
Eco53kI GAGCTC 1 cut(s) 52
EcoICRI GAGCTC 1 cut(s) 52
EcoT38I GRGCYC 1 cut(s) 54
FaeI CATG 3 cut(s) 425, 677, 688
FaiI YATR 3 cut(s) 423, 675, 686
FatI CATG 3 cut(s) 421, 673, 684
Fnu4HI GCNGC 3 cut(s) 186, 454, 553
FokI GGATG 2 cut(s) 41, 543
FriOI GRGCYC 1 cut(s) 54
Fsp4HI GCNGC 3 cut(s) 186, 454, 553
FspBI CTAG 2 cut(s) 87, 576
GluI GCNGC 3 cut(s) 186, 454, 553
GsuI CTGGAG 1 cut(s) 396
HaeIII GGCC 2 cut(s) 408, 525
Hin1II CATG 3 cut(s) 425, 677, 688
HincII GTYRAC 1 cut(s) 670
HindII GTYRAC 1 cut(s) 670
HinfI GANTC 1 cut(s) 722
HphI GGTGA 2 cut(s) 22, 251
Hpy166II GTNNAC 2 cut(s) 217, 670
Hpy188I TCNGA 1 cut(s) 163
Hpy8I GTNNAC 2 cut(s) 217, 670
HpyAV CCTTC 3 cut(s) 239, 411, 632
HpyCH4III ACNGT 1 cut(s) 211
HpyCH4V TGCA 5 cut(s) 45, 660, 677, 684, 711
HpyF10VI GCNNNNNNNGC 1 cut(s) 377
HpyF3I CTNAG 1 cut(s) 81
Hsp92II CATG 3 cut(s) 425, 677, 688
Kzo9I GATC 2 cut(s) 12, 150
LmnI GCTCC 2 cut(s) 347, 377
LpnPI CCDG 5 cut(s) 222, 336, 360, 366, 620
Lsp1109I GCAGC 1 cut(s) 172
MaeI CTAG 2 cut(s) 87, 576
MalI GATC 2 cut(s) 14, 152
MboI GATC 2 cut(s) 12, 150
MboII GAAGA 2 cut(s) 82, 729
MhlI GDGCHC 1 cut(s) 54
MlyI GAGTC 1 cut(s) 716
MseI TTAA 1 cut(s) 62
MspCI CTTAAG 1 cut(s) 61
MwoI GCNNNNNNNGC 1 cut(s) 377
NdeII GATC 2 cut(s) 12, 150
NlaIII CATG 3 cut(s) 425, 677, 688
NlaIV GGNNCC 1 cut(s) 616
PaqCI CACCTGC 1 cut(s) 341
PkrI GCNGC 3 cut(s) 187, 455, 554
PleI GAGTC 1 cut(s) 716
PpsI GAGTC 1 cut(s) 716
Psp124BI GAGCTC 1 cut(s) 54
PspN4I GGNNCC 1 cut(s) 616
PspPI GGNCC 1 cut(s) 688
SacI GAGCTC 1 cut(s) 54
SaqAI TTAA 1 cut(s) 62
SatI GCNGC 3 cut(s) 186, 454, 553
Sau3AI GATC 2 cut(s) 12, 150
Sau96I GGNCC 1 cut(s) 688
SchI GAGTC 1 cut(s) 716
SduI GDGCHC 1 cut(s) 54
SinI GGWCC 1 cut(s) 688
SmlI CTYRAG 3 cut(s) 53, 61, 649
SmoI CTYRAG 3 cut(s) 53, 61, 649
SsiI CCGC 9 cut(s) 294, 300, 342, 453, 456, 468, 552, 555, 567
SspMI CTAG 2 cut(s) 87, 576
SstI GAGCTC 1 cut(s) 54
TaaI ACNGT 1 cut(s) 211
TauI GCSGC 2 cut(s) 456, 555
Tru1I TTAA 1 cut(s) 62
Tru9I TTAA 1 cut(s) 62
TscAI CASTG 1 cut(s) 686
TseI GCWGC 1 cut(s) 185
TspDTI ATGAA 3 cut(s) 123, 222, 258
TspGWI ACGGA 1 cut(s) 543
TspRI CASTG 1 cut(s) 686
Vha464I CTTAAG 1 cut(s) 61
VpaK11BI GGWCC 1 cut(s) 688
XcmI CCANNNNNNNNNTGG 1 cut(s) 533
XspI CTAG 2 cut(s) 87, 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.