Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

7871520 .. 7872283

Gene Structure 764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGCAATGGACCCCGAGATCAAGAAAATGATTGTGAAGCCTTGGAAAAGAGGCTACTTGTTGTATTGTCCTCCCGGCACTGGAAAATCGAGCTTGATCGCTACCATGGCTAGTTATCTCAAGTTTGATGTGTATGATTTCGAGATTAGTAATCCTTCCACTGACTATATATTGAAGAGGGTGTTGTTATCTACTACATATCGTTCGATTTTGGTGATCGAGGACTGGGGATCGATTGTTGCAGCACCATGTGTTATTTTTAGGGGTGGTTCGGTATGGGATCCCATACCGAAACCCTTGTCCCGATTCCCAAACCGAAATTTTTGGGAATCCCAAATTCAATACCAATCCCAAACCAAATTTTCGGGAATCCCAATTTTCGGGAATCCCGAAATAATTTCAGGATTTCGGGACAAATCGGGAATCCCGAAATGCTTTTGGGCTTTTGGACTAAAATTTGACATATTATGTTTTTGGGCTAAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

163

Amino Acids

18.55

Weight (kDa)

9.3

Isoelectric Point (pI)

34.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	238, 275, 288
AcsI	RAATTY	5 cut(s)	319, 336, 359, 455, 483
AdeI	CACNNNGTG	1 cut(s)	251
AfiI	CCNNNNNNNGG	2 cut(s)	80, 380
AgsI	TTSAA	2 cut(s)	175, 341
AluBI	AGCT	1 cut(s)	93
AluI	AGCT	1 cut(s)	93
AlwI	GGATC	3 cut(s)	238, 275, 288
Ama87I	CYCGRG	1 cut(s)	14
ApeKI	GCWGC	1 cut(s)	242
ApoI	RAATTY	5 cut(s)	319, 336, 359, 455, 483
ArsI	GACNNNNNNTTYG	2 cut(s)	284, 316
AspS9I	GGNCC	1 cut(s)	10
AsuC2I	CCSGG	1 cut(s)	75
AsuHPI	GGTGA	1 cut(s)	226
AvaI	CYCGRG	1 cut(s)	14
AvaII	GGWCC	1 cut(s)	10
BamHI	GGATCC	1 cut(s)	280
BbvI	GCAGC	1 cut(s)	254
BcnI	CCSGG	1 cut(s)	75
BfaI	CTAG	1 cut(s)	111
BisI	GCNGC	1 cut(s)	243
BlsI	GCNGC	1 cut(s)	244
Bme1390I	CCNGG	1 cut(s)	75
Bme18I	GGWCC	1 cut(s)	10
BmeT110I	CYCGRG	1 cut(s)	14
BmgT120I	GGNCC	1 cut(s)	10
BmiI	GGNNCC	2 cut(s)	12, 282
BmrFI	CCNGG	1 cut(s)	75
BmrI	ACTGGG	1 cut(s)	235
BmuI	ACTGGG	1 cut(s)	235
BpuEI	CTTGAG	1 cut(s)	104
BpuMI	CCSGG	1 cut(s)	75
Bsa29I	ATCGAT	1 cut(s)	233
BsaJI	CCNNGG	2 cut(s)	41, 105
Bsc4I	CCNNNNNNNGG	2 cut(s)	80, 380
Bse1I	ACTGG	2 cut(s)	85, 230
Bse3DI	GCAATG	1 cut(s)	12
BseCI	ATCGAT	1 cut(s)	233
BseDI	CCNNGG	2 cut(s)	41, 105
BseLI	CCNNNNNNNGG	2 cut(s)	80, 380
BseMI	GCAATG	1 cut(s)	12
BseNI	ACTGG	2 cut(s)	85, 230
BseXI	GCAGC	1 cut(s)	254
BshVI	ATCGAT	1 cut(s)	233
BsiHKCI	CYCGRG	1 cut(s)	14
BsiSI	CCGG	1 cut(s)	75
BslFI	GGGAC	2 cut(s)	286, 425
BslI	CCNNNNNNNGG	2 cut(s)	80, 380
BsmFI	GGGAC	2 cut(s)	286, 425
BsoBI	CYCGRG	1 cut(s)	14
Bsp143I	GATC	5 cut(s)	18, 96, 216, 230, 280
Bsp19I	CCATGG	1 cut(s)	105
BspDI	ATCGAT	1 cut(s)	233
BspLI	GGNNCC	2 cut(s)	12, 282
BspPI	GGATC	3 cut(s)	238, 275, 288
BsrDI	GCAATG	1 cut(s)	12
BsrI	ACTGG	2 cut(s)	85, 230
BssECI	CCNNGG	2 cut(s)	41, 105
BssMI	GATC	5 cut(s)	18, 96, 216, 230, 280
BssT1I	CCWWGG	2 cut(s)	41, 105
Bst6I	CTCTTC	1 cut(s)	170
BstDSI	CCRYGG	1 cut(s)	105
BstKTI	GATC	5 cut(s)	21, 99, 219, 233, 283
BstMBI	GATC	5 cut(s)	18, 96, 216, 230, 280
BstMWI	GCNNNNNNNGC	1 cut(s)	107
BstSCI	CCNGG	1 cut(s)	73
BstV1I	GCAGC	1 cut(s)	254
BstX2I	RGATCY	1 cut(s)	280
BstYI	RGATCY	1 cut(s)	280
Bsu15I	ATCGAT	1 cut(s)	233
BsuTUI	ATCGAT	1 cut(s)	233
BtgI	CCRYGG	1 cut(s)	105
BtsIMutI	CAGTG	2 cut(s)	78, 159
Cfr13I	GGNCC	1 cut(s)	10
ClaI	ATCGAT	1 cut(s)	233
CviAII	CATG	2 cut(s)	106, 249
CviJI	RGCY	6 cut(s)	40, 54, 93, 110, 443, 479
CviKI_1	RGCY	6 cut(s)	40, 54, 93, 110, 443, 479
DpnI	GATC	5 cut(s)	20, 98, 218, 232, 282
DpnII	GATC	5 cut(s)	18, 96, 216, 230, 280
DraIII	CACNNNGTG	1 cut(s)	251
Eam1104I	CTCTTC	1 cut(s)	170
EarI	CTCTTC	1 cut(s)	170
Eco130I	CCWWGG	2 cut(s)	41, 105
Eco47I	GGWCC	1 cut(s)	10
Eco88I	CYCGRG	1 cut(s)	14
EcoT14I	CCWWGG	2 cut(s)	41, 105
ErhI	CCWWGG	2 cut(s)	41, 105
FaeI	CATG	2 cut(s)	109, 252
FaqI	GGGAC	2 cut(s)	286, 425
FatI	CATG	2 cut(s)	105, 248
Fnu4HI	GCNGC	1 cut(s)	243
Fsp4HI	GCNGC	1 cut(s)	243
FspBI	CTAG	1 cut(s)	111
GluI	GCNGC	1 cut(s)	243
HapII	CCGG	1 cut(s)	75
Hin1II	CATG	2 cut(s)	109, 252
HinfI	GANTC	5 cut(s)	306, 329, 369, 385, 423
HpaII	CCGG	1 cut(s)	75
HphI	GGTGA	1 cut(s)	226
HpyAV	CCTTC	1 cut(s)	165
HpyCH4V	TGCA	1 cut(s)	242
HpyF10VI	GCNNNNNNNGC	1 cut(s)	107
Hsp92II	CATG	2 cut(s)	109, 252
Kzo9I	GATC	5 cut(s)	18, 96, 216, 230, 280
LpnPI	CCDG	4 cut(s)	66, 88, 211, 387
Lsp1109I	GCAGC	1 cut(s)	254
MaeI	CTAG	1 cut(s)	111
MalI	GATC	5 cut(s)	20, 98, 218, 232, 282
MboI	GATC	5 cut(s)	18, 96, 216, 230, 280
MboII	GAAGA	1 cut(s)	187
MflI	RGATCY	1 cut(s)	280
MluCI	AATT	7 cut(s)	319, 336, 359, 375, 396, 455, 483
MnlI	CCTC	4 cut(s)	44, 81, 171, 214
MspI	CCGG	1 cut(s)	75
MspR9I	CCNGG	1 cut(s)	75
MwoI	GCNNNNNNNGC	1 cut(s)	107
NciI	CCSGG	1 cut(s)	75
NcoI	CCATGG	1 cut(s)	105
NdeII	GATC	5 cut(s)	18, 96, 216, 230, 280
NlaIII	CATG	2 cut(s)	109, 252
NlaIV	GGNNCC	2 cut(s)	12, 282
PcsI	WCGNNNNNNNCGW	2 cut(s)	387, 425
PfeI	GAWTC	5 cut(s)	306, 329, 369, 385, 423
PkrI	GCNGC	1 cut(s)	244
PspN4I	GGNNCC	2 cut(s)	12, 282
PspPI	GGNCC	1 cut(s)	10
PsuI	RGATCY	1 cut(s)	280
SatI	GCNGC	1 cut(s)	243
Sau3AI	GATC	5 cut(s)	18, 96, 216, 230, 280
Sau96I	GGNCC	1 cut(s)	10
ScrFI	CCNGG	1 cut(s)	75
SetI	ASST	1 cut(s)	95
SinI	GGWCC	1 cut(s)	10
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	7 cut(s)	319, 336, 359, 375, 396, 455, 483
SspMI	CTAG	1 cut(s)	111
StyD4I	CCNGG	1 cut(s)	73
StyI	CCWWGG	2 cut(s)	41, 105
TaqI	TCGA	5 cut(s)	89, 141, 206, 219, 233
TasI	AATT	7 cut(s)	319, 336, 359, 375, 396, 455, 483
TfiI	GAWTC	5 cut(s)	306, 329, 369, 385, 423
TscAI	CASTG	2 cut(s)	85, 166
TseI	GCWGC	1 cut(s)	242
TspRI	CASTG	2 cut(s)	85, 166
VpaK11BI	GGWCC	1 cut(s)	10
XapI	RAATTY	5 cut(s)	319, 336, 359, 455, 483
XspI	CTAG	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.