Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

7923289 .. 7923722

Gene Structure 434 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGCCCTTGGTCTAGTTGTGGGGACGAGAGAATTATCGTGTACGTTCACAACCAATCACAATAACAAGTTCGACCCTGCACTGGTGCGCCCTAGTTGCATGGACGTTCATGTTCACATGTCCTATTGTACCCCAGGTGGTTTTAGGCTTCTAGCTTCCAATTACCTTGGAATTAAGGAGCACATTTTGTTTAGTGAGATTGAGGAACAAATTGAAGCCGTTCAAGTAACTTCGACAGAAGTGGCTGAGCAGCTGATCAATAGCGACGAGCCTGGCATTGCACTGCAAGGCCTGATCGAATTTTTCAAGGCGAAGAAAAAGGAAAATGAGGAAGCTGCTGAGGCTAAGAGGAAACAAGAACTAGAGGCTAAGGAAAAGGAAAAAAGCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002237 GO:0002376 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005743 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0006996 GO:0007005 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009626 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009751 GO:0009863 GO:0009987 GO:0010033 GO:0012501 GO:0014070 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0019867 GO:0022607 GO:0023052 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032870 GO:0033108 GO:0033554 GO:0034050 GO:0034551 GO:0034622 GO:0035690 GO:0042221 GO:0042493 GO:0042623 GO:0042802 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065003 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0071840 GO:0098588 GO:0098805 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

131

Amino Acids

14.58

Weight (kDa)

5.42

Isoelectric Point (pI)

69.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_lid_At3g28540	PF25568	43 - 113	8.6e-21	At3g28540-like, AAA+ ATPase lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	299
AfaI	GTAC	2 cut(s)	43, 130
AfiI	CCNNNNNNNGG	1 cut(s)	82
AflIII	ACRYGT	1 cut(s)	117
AgsI	TTSAA	3 cut(s)	215, 224, 307
AjnI	CCWGG	2 cut(s)	133, 271
AluBI	AGCT	3 cut(s)	155, 253, 335
AluI	AGCT	3 cut(s)	155, 253, 335
Alw21I	GWGCWC	1 cut(s)	183
AoxI	GGCC	2 cut(s)	3, 289
ApeKI	GCWGC	2 cut(s)	250, 335
ApoI	RAATTY	1 cut(s)	299
Asp700I	GAANNNNTTC	1 cut(s)	219
AspLEI	GCGC	1 cut(s)	90
AspS9I	GGNCC	1 cut(s)	4
Bbv12I	GWGCWC	1 cut(s)	183
BbvCI	CCTCAGC	1 cut(s)	339
BbvI	GCAGC	2 cut(s)	262, 322
BceAI	ACGGC	1 cut(s)	203
BciT130I	CCWGG	2 cut(s)	135, 273
BclI	TGATCA	1 cut(s)	255
BfaI	CTAG	4 cut(s)	14, 93, 152, 362
BisI	GCNGC	2 cut(s)	251, 336
BlpI	GCTNAGC	1 cut(s)	246
BlsI	GCNGC	2 cut(s)	252, 337
Bme1390I	CCNGG	2 cut(s)	135, 273
BmgT120I	GGNCC	1 cut(s)	4
BmrFI	CCNGG	2 cut(s)	135, 273
Bpu10I	CCTNAGC	2 cut(s)	339, 369
Bpu1102I	GCTNAGC	1 cut(s)	246
BsaJI	CCNNGG	3 cut(s)	7, 133, 166
Bsc4I	CCNNNNNNNGG	1 cut(s)	82
Bse1I	ACTGG	1 cut(s)	87
Bse3DI	GCAATG	1 cut(s)	276
BseBI	CCWGG	2 cut(s)	135, 273
BseDI	CCNNGG	3 cut(s)	7, 133, 166
BseLI	CCNNNNNNNGG	1 cut(s)	82
BseMI	GCAATG	1 cut(s)	276
BseMII	CTCAG	2 cut(s)	237, 330
BseNI	ACTGG	1 cut(s)	87
BseXI	GCAGC	2 cut(s)	262, 322
BsgI	GTGCAG	1 cut(s)	63
BshFI	GGCC	2 cut(s)	5, 291
BsiHKAI	GWGCWC	1 cut(s)	183
BslFI	GGGAC	1 cut(s)	37
BslI	CCNNNNNNNGG	1 cut(s)	82
BsmFI	GGGAC	1 cut(s)	37
BsnI	GGCC	2 cut(s)	5, 291
Bsp1286I	GDGCHC	1 cut(s)	183
Bsp143I	GATC	2 cut(s)	255, 294
Bsp1720I	GCTNAGC	1 cut(s)	246
BspANI	GGCC	2 cut(s)	5, 291
BspCNI	CTCAG	2 cut(s)	238, 331
BsrDI	GCAATG	1 cut(s)	276
BsrI	ACTGG	1 cut(s)	87
BssECI	CCNNGG	3 cut(s)	7, 133, 166
BssMI	GATC	2 cut(s)	255, 294
BssT1I	CCWWGG	2 cut(s)	7, 166
Bst2UI	CCWGG	2 cut(s)	135, 273
BstDEI	CTNAG	4 cut(s)	246, 339, 345, 369
BstHHI	GCGC	1 cut(s)	90
BstKTI	GATC	2 cut(s)	258, 297
BstMBI	GATC	2 cut(s)	255, 294
BstMWI	GCNNNNNNNGC	2 cut(s)	96, 341
BstNI	CCWGG	2 cut(s)	135, 273
BstNSI	RCATGY	1 cut(s)	121
BstSCI	CCNGG	2 cut(s)	133, 271
BstV1I	GCAGC	2 cut(s)	262, 322
BsuRI	GGCC	2 cut(s)	5, 291
BtsI	GCAGTG	1 cut(s)	281
BtsIMutI	CAGTG	2 cut(s)	80, 281
CfoI	GCGC	1 cut(s)	90
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	2 cut(s)	42, 129
CviAII	CATG	3 cut(s)	100, 110, 118
CviQI	GTAC	2 cut(s)	42, 129
DdeI	CTNAG	4 cut(s)	246, 339, 345, 369
DpnI	GATC	2 cut(s)	257, 296
DpnII	GATC	2 cut(s)	255, 294
Eco130I	CCWWGG	2 cut(s)	7, 166
Eco147I	AGGCCT	1 cut(s)	291
EcoRII	CCWGG	2 cut(s)	133, 271
EcoT14I	CCWWGG	2 cut(s)	7, 166
ErhI	CCWWGG	2 cut(s)	7, 166
FaeI	CATG	3 cut(s)	103, 113, 121
FaiI	YATR	3 cut(s)	101, 111, 119
FaqI	GGGAC	1 cut(s)	37
FatI	CATG	3 cut(s)	99, 109, 117
FbaI	TGATCA	1 cut(s)	255
Fnu4HI	GCNGC	2 cut(s)	251, 336
Fsp4HI	GCNGC	2 cut(s)	251, 336
FspBI	CTAG	4 cut(s)	14, 93, 152, 362
GlaI	GCGC	1 cut(s)	89
GluI	GCNGC	2 cut(s)	251, 336
HaeIII	GGCC	2 cut(s)	5, 291
HhaI	GCGC	1 cut(s)	90
Hin1II	CATG	3 cut(s)	103, 113, 121
Hin6I	GCGC	1 cut(s)	88
HinP1I	GCGC	1 cut(s)	88
Hpy166II	GTNNAC	3 cut(s)	42, 48, 115
Hpy8I	GTNNAC	3 cut(s)	42, 48, 115
Hpy99I	CGWCG	1 cut(s)	269
HpyCH4IV	ACGT	2 cut(s)	44, 105
HpyCH4V	TGCA	4 cut(s)	80, 99, 281, 286
HpyF10VI	GCNNNNNNNGC	2 cut(s)	96, 341
HpyF3I	CTNAG	4 cut(s)	246, 339, 345, 369
HpySE526I	ACGT	2 cut(s)	44, 105
Hsp92II	CATG	3 cut(s)	103, 113, 121
HspAI	GCGC	1 cut(s)	88
Ksp22I	TGATCA	1 cut(s)	255
Kzo9I	GATC	2 cut(s)	255, 294
LmnI	GCTCC	1 cut(s)	178
LpnPI	CCDG	7 cut(s)	68, 90, 120, 147, 258, 285, 305
Lsp1109I	GCAGC	2 cut(s)	262, 322
MaeI	CTAG	4 cut(s)	14, 93, 152, 362
MaeII	ACGT	2 cut(s)	44, 105
MaeIII	GTNAC	1 cut(s)	226
MalI	GATC	2 cut(s)	257, 296
MboI	GATC	2 cut(s)	255, 294
MboII	GAAGA	1 cut(s)	325
MhlI	GDGCHC	1 cut(s)	183
MluCI	AATT	5 cut(s)	32, 160, 171, 210, 299
MnlI	CCTC	5 cut(s)	196, 322, 334, 342, 358
MroXI	GAANNNNTTC	1 cut(s)	219
MseI	TTAA	1 cut(s)	174
MspA1I	CMGCKG	1 cut(s)	253
MspR9I	CCNGG	2 cut(s)	135, 273
MvaI	CCWGG	2 cut(s)	135, 273
MwoI	GCNNNNNNNGC	2 cut(s)	96, 341
NdeII	GATC	2 cut(s)	255, 294
NlaIII	CATG	3 cut(s)	103, 113, 121
NspI	RCATGY	1 cut(s)	121
PceI	AGGCCT	1 cut(s)	291
PciI	ACATGT	1 cut(s)	117
PdmI	GAANNNNTTC	1 cut(s)	219
PkrI	GCNGC	2 cut(s)	252, 337
PscI	ACATGT	1 cut(s)	117
Psp6I	CCWGG	2 cut(s)	133, 271
PspGI	CCWGG	2 cut(s)	133, 271
PspPI	GGNCC	1 cut(s)	4
PvuII	CAGCTG	1 cut(s)	253
RsaI	GTAC	2 cut(s)	43, 130
RsaNI	GTAC	2 cut(s)	42, 129
SaqAI	TTAA	1 cut(s)	174
SatI	GCNGC	2 cut(s)	251, 336
Sau3AI	GATC	2 cut(s)	255, 294
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	2 cut(s)	135, 273
SduI	GDGCHC	1 cut(s)	183
SetI	ASST	7 cut(s)	47, 108, 139, 157, 168, 255, 337
Sse9I	AATT	5 cut(s)	32, 160, 171, 210, 299
SseBI	AGGCCT	1 cut(s)	291
SspMI	CTAG	4 cut(s)	14, 93, 152, 362
StuI	AGGCCT	1 cut(s)	291
StyD4I	CCNGG	2 cut(s)	133, 271
StyI	CCWWGG	2 cut(s)	7, 166
TaiI	ACGT	2 cut(s)	47, 108
TaqI	TCGA	3 cut(s)	72, 233, 297
TasI	AATT	5 cut(s)	32, 160, 171, 210, 299
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TscAI	CASTG	2 cut(s)	87, 288
TseI	GCWGC	2 cut(s)	250, 335
TspDTI	ATGAA	1 cut(s)	98
TspRI	CASTG	2 cut(s)	87, 288
XapI	RAATTY	1 cut(s)	299
XceI	RCATGY	1 cut(s)	121
XmnI	GAANNNNTTC	1 cut(s)	219
XspI	CTAG	4 cut(s)	14, 93, 152, 362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.