pycom02g12080

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
N/A
Physical Location & Seq
Reverse (-)
8648319 .. 8648835
517 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 462 bp
ATGGAACTAGACTTTGTAATTTGCCAGTATCCTACAAAACTTTGTCGTATTACCCTTACCCTCTCCCTCTCTACAAAAAACATCACCCACAACCTCTTTTGTAAAACCCATGCCATTTCTGATGAGATCCAACCGATTAATATCAATTCCGAGAATTTGATTGAGCCAAGCCAGGTCGACTCGGCGCAACTCATCTTCAAATCATGGCTCAGGAGGCTCTTTGACCAACAGTTCCCGAGCATGCTTAGAATATCTTACGCGCAGGAGAAGCCGACTGCTACTAAGTCGCCGCTTCAACAGCAGAACTACAGTACCAGCAAGATGGAGCAACTGTCGCCGTCGCTGCCGAGTTCAAGCCGAGCTCAGATCTCGGTGGAGCAGAAAGAGAAGAAAGCGAGGAGAGATGAGGAAGGGAAAGGGGAATTGGCGAGGGGGAATGATGGTGGCTCTCGGCGTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

154

Amino Acids

17.43

Weight (kDa)

9.05

Isoelectric Point (pI)

70.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 177
AccII CGCG 1 cut(s) 260
AciI CCGC 1 cut(s) 290
AclWI GGATC 1 cut(s) 121
AcsI RAATTY 1 cut(s) 154
AfaI GTAC 1 cut(s) 313
AgsI TTSAA 3 cut(s) 199, 296, 354
AjnI CCWGG 1 cut(s) 171
AjuI GAANNNNNNNTTGG 2 cut(s) 407, 439
AluBI AGCT 1 cut(s) 362
AluI AGCT 1 cut(s) 362
Alw21I GWGCWC 1 cut(s) 364
AlwI GGATC 1 cut(s) 121
Ama87I CYCGRG 1 cut(s) 235
ApeKI GCWGC 1 cut(s) 343
ApoI RAATTY 1 cut(s) 154
AseI ATTAAT 1 cut(s) 138
AspLEI GCGC 2 cut(s) 187, 262
AsuHPI GGTGA 1 cut(s) 76
AvaI CYCGRG 1 cut(s) 235
BaeI ACNNNNGTAYC 2 cut(s) 295, 328
BanII GRGCYC 1 cut(s) 364
Bbv12I GWGCWC 1 cut(s) 364
BbvI GCAGC 1 cut(s) 330
BccI CCATC 2 cut(s) 316, 434
BceAI ACGGC 1 cut(s) 322
BciT130I CCWGG 1 cut(s) 173
BciVI GTATCC 1 cut(s) 39
BfaI CTAG 1 cut(s) 8
BfmI CTRYAG 1 cut(s) 307
BfuI GTATCC 1 cut(s) 39
BglII AGATCT 1 cut(s) 366
BisI GCNGC 2 cut(s) 290, 344
BlsI GCNGC 2 cut(s) 291, 345
Bme1390I CCNGG 1 cut(s) 173
BmeT110I CYCGRG 1 cut(s) 235
BmrFI CCNGG 1 cut(s) 173
Bpu10I CCTNAGC 1 cut(s) 209
BsaBI GATNNNNATC 1 cut(s) 140
BsaXI ACNNNNNCTCC 2 cut(s) 317, 347
Bse1I ACTGG 1 cut(s) 25
Bse8I GATNNNNATC 1 cut(s) 140
BseBI CCWGG 1 cut(s) 173
BseJI GATNNNNATC 1 cut(s) 140
BseMII CTCAG 2 cut(s) 223, 377
BseNI ACTGG 1 cut(s) 25
BseRI GAGGAG 1 cut(s) 412
BseXI GCAGC 1 cut(s) 330
Bsh1236I CGCG 1 cut(s) 260
BsiHKAI GWGCWC 1 cut(s) 364
BsiHKCI CYCGRG 1 cut(s) 235
BsoBI CYCGRG 1 cut(s) 235
Bsp1286I GDGCHC 1 cut(s) 364
Bsp143I GATC 2 cut(s) 126, 366
BspACI CCGC 1 cut(s) 290
BspCNI CTCAG 2 cut(s) 222, 376
BspFNI CGCG 1 cut(s) 260
BspPI GGATC 1 cut(s) 121
BsrI ACTGG 1 cut(s) 25
BssMI GATC 2 cut(s) 126, 366
Bst2UI CCWGG 1 cut(s) 173
Bst4CI ACNGT 3 cut(s) 231, 311, 333
BstC8I GCNNGC 1 cut(s) 242
BstDEI CTNAG 4 cut(s) 209, 245, 282, 363
BstFNI CGCG 1 cut(s) 260
BstHHI GCGC 2 cut(s) 187, 262
BstKTI GATC 2 cut(s) 129, 369
BstMBI GATC 2 cut(s) 126, 366
BstMWI GCNNNNNNNGC 5 cut(s) 214, 268, 298, 334, 343
BstNI CCWGG 1 cut(s) 173
BstNSI RCATGY 1 cut(s) 244
BstSCI CCNGG 1 cut(s) 171
BstSFI CTRYAG 1 cut(s) 307
BstUI CGCG 1 cut(s) 260
BstV1I GCAGC 1 cut(s) 330
BstX2I RGATCY 2 cut(s) 126, 366
BstXI CCANNNNNNTGG 1 cut(s) 322
BstYI RGATCY 2 cut(s) 126, 366
BsuI GTATCC 1 cut(s) 39
Cac8I GCNNGC 1 cut(s) 242
CfoI GCGC 2 cut(s) 187, 262
Csp6I GTAC 1 cut(s) 312
CviAII CATG 3 cut(s) 110, 204, 241
CviJI RGCY 8 cut(s) 166, 171, 208, 217, 271, 357, 362, 447
CviKI_1 RGCY 8 cut(s) 166, 171, 208, 217, 271, 357, 362, 447
CviQI GTAC 1 cut(s) 312
DdeI CTNAG 4 cut(s) 209, 245, 282, 363
DpnI GATC 2 cut(s) 128, 368
DpnII GATC 2 cut(s) 126, 366
Ecl136II GAGCTC 1 cut(s) 362
Eco24I GRGCYC 1 cut(s) 364
Eco53kI GAGCTC 1 cut(s) 362
Eco88I CYCGRG 1 cut(s) 235
EcoICRI GAGCTC 1 cut(s) 362
EcoRII CCWGG 1 cut(s) 171
EcoT38I GRGCYC 1 cut(s) 364
FaeI CATG 3 cut(s) 113, 207, 244
FaiI YATR 3 cut(s) 111, 205, 242
FatI CATG 3 cut(s) 109, 203, 240
FblI GTMKAC 1 cut(s) 177
Fnu4HI GCNGC 2 cut(s) 290, 344
FriOI GRGCYC 1 cut(s) 364
Fsp4HI GCNGC 2 cut(s) 290, 344
FspBI CTAG 1 cut(s) 8
GlaI GCGC 2 cut(s) 186, 261
GluI GCNGC 2 cut(s) 290, 344
HhaI GCGC 2 cut(s) 187, 262
Hin1II CATG 3 cut(s) 113, 207, 244
Hin6I GCGC 2 cut(s) 185, 260
HinP1I GCGC 2 cut(s) 185, 260
HincII GTYRAC 1 cut(s) 178
HindII GTYRAC 1 cut(s) 178
HinfI GANTC 1 cut(s) 179
HphI GGTGA 1 cut(s) 76
Hpy166II GTNNAC 1 cut(s) 178
Hpy188I TCNGA 3 cut(s) 121, 151, 366
Hpy188III TCNNGA 2 cut(s) 211, 235
Hpy8I GTNNAC 1 cut(s) 178
Hpy99I CGWCG 1 cut(s) 343
HpyAV CCTTC 1 cut(s) 404
HpyCH4III ACNGT 3 cut(s) 231, 311, 333
HpyF10VI GCNNNNNNNGC 5 cut(s) 214, 268, 298, 334, 343
HpyF3I CTNAG 4 cut(s) 209, 245, 282, 363
Hsp92II CATG 3 cut(s) 113, 207, 244
HspAI GCGC 2 cut(s) 185, 260
Kzo9I GATC 2 cut(s) 126, 366
LmnI GCTCC 2 cut(s) 325, 376
LpnPI CCDG 6 cut(s) 38, 158, 185, 196, 248, 328
Lsp1109I GCAGC 1 cut(s) 330
MaeI CTAG 1 cut(s) 8
MalI GATC 2 cut(s) 128, 368
MboI GATC 2 cut(s) 126, 366
MboII GAAGA 2 cut(s) 187, 400
MflI RGATCY 2 cut(s) 126, 366
MhlI GDGCHC 1 cut(s) 364
MluCI AATT 4 cut(s) 18, 145, 154, 422
MlyI GAGTC 1 cut(s) 173
MmeI TCCRAC 1 cut(s) 154
MnlI CCTC 7 cut(s) 71, 77, 104, 207, 390, 400, 423
MseI TTAA 1 cut(s) 138
MspR9I CCNGG 1 cut(s) 173
MvaI CCWGG 1 cut(s) 173
MvnI CGCG 1 cut(s) 260
MwoI GCNNNNNNNGC 5 cut(s) 214, 268, 298, 334, 343
NdeII GATC 2 cut(s) 126, 366
NlaIII CATG 3 cut(s) 113, 207, 244
NmeAIII GCCGAG 4 cut(s) 161, 372, 383, 430
NspI RCATGY 1 cut(s) 244
PaeI GCATGC 1 cut(s) 244
PkrI GCNGC 2 cut(s) 291, 345
PleI GAGTC 1 cut(s) 173
PpsI GAGTC 1 cut(s) 173
PshBI ATTAAT 1 cut(s) 138
Psp124BI GAGCTC 1 cut(s) 364
Psp6I CCWGG 1 cut(s) 171
PspGI CCWGG 1 cut(s) 171
PsuI RGATCY 2 cut(s) 126, 366
RsaI GTAC 1 cut(s) 313
RsaNI GTAC 1 cut(s) 312
SacI GAGCTC 1 cut(s) 364
SalI GTCGAC 1 cut(s) 176
SaqAI TTAA 1 cut(s) 138
SatI GCNGC 2 cut(s) 290, 344
Sau3AI GATC 2 cut(s) 126, 366
SchI GAGTC 1 cut(s) 173
ScrFI CCNGG 1 cut(s) 173
SduI GDGCHC 1 cut(s) 364
SetI ASST 3 cut(s) 96, 177, 364
SfcI CTRYAG 1 cut(s) 307
SphI GCATGC 1 cut(s) 244
Sse9I AATT 4 cut(s) 18, 145, 154, 422
SsiI CCGC 1 cut(s) 290
SspMI CTAG 1 cut(s) 8
SstI GAGCTC 1 cut(s) 364
StyD4I CCNGG 1 cut(s) 171
TaaI ACNGT 3 cut(s) 231, 311, 333
TaqI TCGA 1 cut(s) 177
TasI AATT 4 cut(s) 18, 145, 154, 422
TauI GCSGC 1 cut(s) 292
Tru1I TTAA 1 cut(s) 138
Tru9I TTAA 1 cut(s) 138
TseI GCWGC 1 cut(s) 343
VspI ATTAAT 1 cut(s) 138
XapI RAATTY 1 cut(s) 154
XceI RCATGY 1 cut(s) 244
XmiI GTMKAC 1 cut(s) 177
XspI CTAG 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.