pycom02g13490

Glycosyltransferase like family 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0026648
Physical Location & Seq
Forward (+)
10004987 .. 10007372
2386 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 609 bp
ATGAAAGCCGTGCGGCACATAGTGCTTGTAATGCCCGACCAAGTGTTCGTGTGGCAACACAAACAAGCGGATCGTCGTATAGTTTGTATACCGCCAGTTGTACACAAGAATCTCTCGTGTTTCTTGGACATGAGTGCCCTTTTATACTTAGAATTGTTCTCCAACTTTACATCAACCATTACCCTTAGTGGCTCCACCCATAGATATGATATAAGAAAAATGGTCTGTGTTTTGGTCCTTGTGTTTAATTTAGTCAACTTGATTATTAAGTGGAAAGCCCCTCGTGCGCCATGGCTCAAAATTAATTTTGACGGTTCAGTGGTGGAATCTCAAGCGGCTGCAGGTTTTGTCATCAAAGATCATGATGGGTCTCCTATTGTTGCTGGGACGCGCAATCTTGGAGAGAATACTATATCTATTGCTGAAGCTCTTGCCTTACGTGATACGTTGAAGTTTGCAAAAGTCAAAGGTTTTAAGGATATATGTGTTGAAGGGGATTCCAAGCTTGTTATCGATTCTATTTTAAACAAGTGCAGAACGCCTTGGCGATTGAAGACTATTATCAAGGACATCAGATTGCTTGCACAATCATTTTCTTCTATATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

203

Amino Acids

22.69

Weight (kDa)

9.58

Isoelectric Point (pI)

32.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 102 - 201 2.8e-16 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0026648)

Species Orthologous Gene IDs
pyrus_communis pycom02g13490
rosa_rugosa Rorug02G0420600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 332
AccI GTMKAC 1 cut(s) 88
AccII CGCG 1 cut(s) 391
AciI CCGC 4 cut(s) 13, 68, 92, 335
AclWI GGATC 1 cut(s) 78
AcuI CTGAAG 1 cut(s) 444
AdeI CACNNNGTG 1 cut(s) 22
AfaI GTAC 1 cut(s) 102
AgsI TTSAA 3 cut(s) 451, 491, 553
AluBI AGCT 2 cut(s) 428, 505
AluI AGCT 2 cut(s) 428, 505
Alw26I GTCTC 1 cut(s) 375
AlwI GGATC 1 cut(s) 78
ApeKI GCWGC 1 cut(s) 338
ArsI GACNNNNNNTTYG 2 cut(s) 29, 61
AseI ATTAAT 1 cut(s) 303
AspLEI GCGC 2 cut(s) 289, 393
AspS9I GGNCC 1 cut(s) 235
AvaII GGWCC 1 cut(s) 235
BaeGI GKGCMC 1 cut(s) 139
BauI CACGAG 2 cut(s) 115, 282
BbsI GAAGAC 1 cut(s) 560
BbvI GCAGC 1 cut(s) 325
BccI CCATC 1 cut(s) 359
BcoDI GTCTC 1 cut(s) 375
BfmI CTRYAG 1 cut(s) 339
BfuAI ACCTGC 1 cut(s) 332
BisI GCNGC 3 cut(s) 14, 336, 339
BlsI GCNGC 3 cut(s) 15, 337, 340
Bme18I GGWCC 1 cut(s) 235
BmgT120I GGNCC 1 cut(s) 235
BmiI GGNNCC 1 cut(s) 193
BpiI GAAGAC 1 cut(s) 560
BpuEI CTTGAG 1 cut(s) 315
Bsa29I ATCGAT 1 cut(s) 513
BsaAI YACGTR 1 cut(s) 440
BsaI GGTCTC 1 cut(s) 375
BsaJI CCNNGG 2 cut(s) 290, 542
Bse1I ACTGG 1 cut(s) 95
BseCI ATCGAT 1 cut(s) 513
BseDI CCNNGG 2 cut(s) 290, 542
BseNI ACTGG 1 cut(s) 95
BseSI GKGCMC 1 cut(s) 139
BseXI GCAGC 1 cut(s) 325
BseYI CCCAGC 1 cut(s) 383
BsgI GTGCAG 1 cut(s) 553
Bsh1236I CGCG 1 cut(s) 391
BshVI ATCGAT 1 cut(s) 513
BslFI GGGAC 1 cut(s) 400
BsmAI GTCTC 1 cut(s) 375
BsmFI GGGAC 1 cut(s) 400
Bso31I GGTCTC 1 cut(s) 375
Bsp1286I GDGCHC 1 cut(s) 139
Bsp1407I TGTACA 1 cut(s) 100
Bsp143I GATC 2 cut(s) 70, 358
Bsp19I CCATGG 1 cut(s) 290
BspACI CCGC 4 cut(s) 13, 68, 92, 335
BspDI ATCGAT 1 cut(s) 513
BspFNI CGCG 1 cut(s) 391
BspHI TCATGA 1 cut(s) 361
BspLI GGNNCC 1 cut(s) 193
BspMAI CTGCAG 1 cut(s) 343
BspMI ACCTGC 1 cut(s) 332
BspPI GGATC 1 cut(s) 78
BspTNI GGTCTC 1 cut(s) 375
BsrGI TGTACA 1 cut(s) 100
BsrI ACTGG 1 cut(s) 95
BssECI CCNNGG 2 cut(s) 290, 542
BssMI GATC 2 cut(s) 70, 358
BssNAI GTATAC 1 cut(s) 89
BssSI CACGAG 2 cut(s) 115, 282
BssT1I CCWWGG 2 cut(s) 290, 542
Bst1107I GTATAC 1 cut(s) 89
Bst2BI CACGAG 2 cut(s) 115, 282
Bst4CI ACNGT 1 cut(s) 314
BstAPI GCANNNNNTGC 1 cut(s) 22
BstAUI TGTACA 1 cut(s) 100
BstBAI YACGTR 1 cut(s) 440
BstC8I GCNNGC 1 cut(s) 582
BstDEI CTNAG 3 cut(s) 148, 185, 606
BstDSI CCRYGG 1 cut(s) 290
BstFNI CGCG 1 cut(s) 391
BstHHI GCGC 2 cut(s) 289, 393
BstKTI GATC 2 cut(s) 73, 361
BstMAI GTCTC 1 cut(s) 375
BstMBI GATC 2 cut(s) 70, 358
BstMWI GCNNNNNNNGC 3 cut(s) 22, 31, 284
BstSFI CTRYAG 1 cut(s) 339
BstSLI GKGCMC 1 cut(s) 139
BstUI CGCG 1 cut(s) 391
BstV1I GCAGC 1 cut(s) 325
BstV2I GAAGAC 1 cut(s) 560
BstZ17I GTATAC 1 cut(s) 89
Bsu15I ATCGAT 1 cut(s) 513
BsuTUI ATCGAT 1 cut(s) 513
BtgI CCRYGG 1 cut(s) 290
BtsIMutI CAGTG 1 cut(s) 324
BveI ACCTGC 1 cut(s) 332
Cac8I GCNNGC 1 cut(s) 582
CciI TCATGA 1 cut(s) 361
CfoI GCGC 2 cut(s) 289, 393
Cfr13I GGNCC 1 cut(s) 235
ClaI ATCGAT 1 cut(s) 513
CseI GACGC 1 cut(s) 397
Csp6I GTAC 1 cut(s) 101
CviAII CATG 3 cut(s) 130, 291, 362
CviJI RGCY 7 cut(s) 8, 192, 278, 295, 338, 428, 505
CviKI_1 RGCY 7 cut(s) 8, 192, 278, 295, 338, 428, 505
CviQI GTAC 1 cut(s) 101
DdeI CTNAG 3 cut(s) 148, 185, 606
DpnI GATC 2 cut(s) 72, 360
DpnII GATC 2 cut(s) 70, 358
DraI TTTAAA 1 cut(s) 525
DraIII CACNNNGTG 1 cut(s) 22
Eco130I CCWWGG 2 cut(s) 290, 542
Eco31I GGTCTC 1 cut(s) 375
Eco47I GGWCC 1 cut(s) 235
Eco57I CTGAAG 1 cut(s) 444
EcoT14I CCWWGG 2 cut(s) 290, 542
ErhI CCWWGG 2 cut(s) 290, 542
FaeI CATG 3 cut(s) 133, 294, 365
FaqI GGGAC 1 cut(s) 400
FatI CATG 3 cut(s) 129, 290, 361
FblI GTMKAC 1 cut(s) 88
Fnu4HI GCNGC 3 cut(s) 14, 336, 339
Fsp4HI GCNGC 3 cut(s) 14, 336, 339
GlaI GCGC 2 cut(s) 288, 392
GluI GCNGC 3 cut(s) 14, 336, 339
GsaI CCCAGC 1 cut(s) 387
HgaI GACGC 1 cut(s) 397
HhaI GCGC 2 cut(s) 289, 393
Hin1II CATG 3 cut(s) 133, 294, 365
Hin6I GCGC 2 cut(s) 287, 391
HinP1I GCGC 2 cut(s) 287, 391
HincII GTYRAC 1 cut(s) 256
HindII GTYRAC 1 cut(s) 256
HindIII AAGCTT 1 cut(s) 503
HinfI GANTC 4 cut(s) 109, 326, 497, 515
Hpy166II GTNNAC 3 cut(s) 89, 103, 256
Hpy188I TCNGA 1 cut(s) 575
Hpy188III TCNNGA 1 cut(s) 362
Hpy8I GTNNAC 3 cut(s) 89, 103, 256
Hpy99I CGWCG 1 cut(s) 78
HpyAV CCTTC 1 cut(s) 485
HpyCH4III ACNGT 1 cut(s) 314
HpyCH4IV ACGT 2 cut(s) 439, 446
HpyCH4V TGCA 4 cut(s) 341, 458, 534, 584
HpyF10VI GCNNNNNNNGC 3 cut(s) 22, 31, 284
HpyF3I CTNAG 3 cut(s) 148, 185, 606
HpySE526I ACGT 2 cut(s) 439, 446
Hsp92II CATG 3 cut(s) 133, 294, 365
HspAI GCGC 2 cut(s) 287, 391
Kzo9I GATC 2 cut(s) 70, 358
LmnI GCTCC 1 cut(s) 197
LpnPI CCDG 3 cut(s) 108, 327, 369
Lsp1109I GCAGC 1 cut(s) 325
MaeII ACGT 2 cut(s) 439, 446
MalI GATC 2 cut(s) 72, 360
MboI GATC 2 cut(s) 70, 358
MboII GAAGA 2 cut(s) 565, 588
MhlI GDGCHC 1 cut(s) 139
MluCI AATT 4 cut(s) 152, 247, 300, 304
MmeI TCCRAC 1 cut(s) 186
MnlI CCTC 1 cut(s) 291
MseI TTAA 5 cut(s) 246, 267, 303, 474, 524
MslI CAYNNNNRTG 1 cut(s) 204
MvnI CGCG 1 cut(s) 391
MwoI GCNNNNNNNGC 3 cut(s) 22, 31, 284
NcoI CCATGG 1 cut(s) 290
NdeII GATC 2 cut(s) 70, 358
NlaIII CATG 3 cut(s) 133, 294, 365
NlaIV GGNNCC 1 cut(s) 193
PagI TCATGA 1 cut(s) 361
PfeI GAWTC 4 cut(s) 109, 326, 497, 515
PkrI GCNGC 3 cut(s) 15, 337, 340
Ppu21I YACGTR 1 cut(s) 440
PshBI ATTAAT 1 cut(s) 303
PspFI CCCAGC 1 cut(s) 383
PspN4I GGNNCC 1 cut(s) 193
PspPI GGNCC 1 cut(s) 235
PstI CTGCAG 1 cut(s) 343
RsaI GTAC 1 cut(s) 102
RsaNI GTAC 1 cut(s) 101
RseI CAYNNNNRTG 1 cut(s) 204
SaqAI TTAA 5 cut(s) 246, 267, 303, 474, 524
SatI GCNGC 3 cut(s) 14, 336, 339
Sau3AI GATC 2 cut(s) 70, 358
Sau96I GGNCC 1 cut(s) 235
SduI GDGCHC 1 cut(s) 139
SetI ASST 6 cut(s) 346, 430, 442, 449, 472, 507
SfcI CTRYAG 1 cut(s) 339
SinI GGWCC 1 cut(s) 235
SmiMI CAYNNNNRTG 1 cut(s) 204
SmlI CTYRAG 1 cut(s) 330
SmoI CTYRAG 1 cut(s) 330
Sse9I AATT 4 cut(s) 152, 247, 300, 304
SsiI CCGC 4 cut(s) 13, 68, 92, 335
StyI CCWWGG 2 cut(s) 290, 542
TaaI ACNGT 1 cut(s) 314
TaiI ACGT 2 cut(s) 442, 449
TaqI TCGA 1 cut(s) 513
TasI AATT 4 cut(s) 152, 247, 300, 304
TatI WGTACW 1 cut(s) 100
TauI GCSGC 2 cut(s) 16, 338
TfiI GAWTC 4 cut(s) 109, 326, 497, 515
Tru1I TTAA 5 cut(s) 246, 267, 303, 474, 524
Tru9I TTAA 5 cut(s) 246, 267, 303, 474, 524
TscAI CASTG 1 cut(s) 324
TseI GCWGC 1 cut(s) 338
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 324
VpaK11BI GGWCC 1 cut(s) 235
VspI ATTAAT 1 cut(s) 303
XmiI GTMKAC 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.