pycom02g14540

Squamosa promoter-binding-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
N/A
Physical Location & Seq
Forward (+)
11115011 .. 11115322
312 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 312 bp
ATGGAGTGGGACTTCAAGGACAGCGACCTTGCTGCTTTGGTGGGGTCTAGCATCTCACAAACCCAGATGAAGAATAAACCAGCTGAATCTCTAGGAATGGATATCAAGAAATTGGAGGAGGACCCAATGAAGGTCTCATCATCCAGAAGGATTAATGGTGATAACAAAGGAAGTGATCATCTGAAAGTTCTATGCTTGGTCAACGGTTGTAGGCCGGACCTCAGCCGTTGTCGGGAATATCATCGGTGGCACAGAGTCTGCAAGCTTCATTCCAAGACCTCCGTTGTCGTTGTCAGGGACGAACATATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SBP

Protein Analysis

104

Amino Acids

11.78

Weight (kDa)

8.75

Isoelectric Point (pI)

42.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SBP PF03110 65 - 101 1.9e-07 SBP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 2 cut(s) 130, 232
AgsI TTSAA 1 cut(s) 16
AluBI AGCT 2 cut(s) 83, 265
AluI AGCT 2 cut(s) 83, 265
Alw26I GTCTC 1 cut(s) 139
AlwNI CAGNNNCTG 1 cut(s) 258
AoxI GGCC 1 cut(s) 212
ApeKI GCWGC 1 cut(s) 32
AseI ATTAAT 1 cut(s) 153
AspS9I GGNCC 2 cut(s) 121, 217
AsuHPI GGTGA 1 cut(s) 170
AvaII GGWCC 2 cut(s) 121, 217
BbvCI CCTCAGC 1 cut(s) 221
BbvI GCAGC 1 cut(s) 19
BceAI ACGGC 1 cut(s) 210
BcgI CGANNNNNNTGC 2 cut(s) 14, 48
BclI TGATCA 1 cut(s) 175
BcoDI GTCTC 1 cut(s) 139
BfaI CTAG 2 cut(s) 48, 92
BisI GCNGC 1 cut(s) 33
BlsI GCNGC 1 cut(s) 34
Bme18I GGWCC 2 cut(s) 121, 217
BmgT120I GGNCC 2 cut(s) 121, 217
BmiI GGNNCC 1 cut(s) 123
BmsI GCATC 1 cut(s) 60
Bpu10I CCTNAGC 1 cut(s) 221
BsaI GGTCTC 1 cut(s) 139
Bsc4I CCNNNNNNNGG 2 cut(s) 130, 232
BseGI GGATG 1 cut(s) 140
BseLI CCNNNNNNNGG 2 cut(s) 130, 232
BseMII CTCAG 1 cut(s) 235
BseRI GAGGAG 1 cut(s) 131
BseXI GCAGC 1 cut(s) 19
BshFI GGCC 1 cut(s) 214
BsiSI CCGG 1 cut(s) 215
BslFI GGGAC 1 cut(s) 23
BslI CCNNNNNNNGG 2 cut(s) 130, 232
BsmAI GTCTC 1 cut(s) 139
BsmFI GGGAC 1 cut(s) 23
BsnI GGCC 1 cut(s) 214
Bso31I GGTCTC 1 cut(s) 139
Bsp143I GATC 1 cut(s) 175
BspANI GGCC 1 cut(s) 214
BspCNI CTCAG 1 cut(s) 234
BspLI GGNNCC 1 cut(s) 123
BspTNI GGTCTC 1 cut(s) 139
BssMI GATC 1 cut(s) 175
Bst4CI ACNGT 1 cut(s) 206
BstC8I GCNNGC 1 cut(s) 263
BstDEI CTNAG 1 cut(s) 221
BstF5I GGATG 1 cut(s) 140
BstKTI GATC 1 cut(s) 178
BstMAI GTCTC 1 cut(s) 139
BstMBI GATC 1 cut(s) 175
BstV1I GCAGC 1 cut(s) 19
BsuRI GGCC 1 cut(s) 214
BtsCI GGATG 1 cut(s) 140
Cac8I GCNNGC 1 cut(s) 263
CaiI CAGNNNCTG 1 cut(s) 258
Cfr13I GGNCC 2 cut(s) 121, 217
CviJI RGCY 4 cut(s) 83, 214, 225, 265
CviKI_1 RGCY 4 cut(s) 83, 214, 225, 265
DdeI CTNAG 1 cut(s) 221
DpnI GATC 1 cut(s) 177
DpnII GATC 1 cut(s) 175
Eco31I GGTCTC 1 cut(s) 139
Eco32I GATATC 1 cut(s) 103
Eco47I GGWCC 2 cut(s) 121, 217
EcoO109I RGGNCCY 1 cut(s) 121
EcoRV GATATC 1 cut(s) 103
FaiI YATR 2 cut(s) 193, 306
FaqI GGGAC 1 cut(s) 23
FbaI TGATCA 1 cut(s) 175
Fnu4HI GCNGC 1 cut(s) 33
FokI GGATG 1 cut(s) 127
Fsp4HI GCNGC 1 cut(s) 33
FspBI CTAG 2 cut(s) 48, 92
GluI GCNGC 1 cut(s) 33
HaeIII GGCC 1 cut(s) 214
HapII CCGG 1 cut(s) 215
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HindIII AAGCTT 1 cut(s) 263
HinfI GANTC 2 cut(s) 86, 255
HpaII CCGG 1 cut(s) 215
HphI GGTGA 1 cut(s) 170
Hpy166II GTNNAC 1 cut(s) 202
Hpy188I TCNGA 1 cut(s) 183
Hpy188III TCNNGA 3 cut(s) 106, 144, 233
Hpy8I GTNNAC 1 cut(s) 202
HpyAV CCTTC 2 cut(s) 124, 141
HpyCH4III ACNGT 1 cut(s) 206
HpyCH4V TGCA 1 cut(s) 261
HpyF3I CTNAG 1 cut(s) 221
Ksp22I TGATCA 1 cut(s) 175
Kzo9I GATC 1 cut(s) 175
LpnPI CCDG 5 cut(s) 77, 93, 157, 228, 280
Lsp1109I GCAGC 1 cut(s) 19
LweI GCATC 1 cut(s) 60
MaeI CTAG 2 cut(s) 48, 92
MalI GATC 1 cut(s) 177
MboI GATC 1 cut(s) 175
MboII GAAGA 1 cut(s) 82
MluCI AATT 1 cut(s) 110
MlyI GAGTC 1 cut(s) 264
MnlI CCTC 4 cut(s) 109, 112, 230, 289
MseI TTAA 2 cut(s) 153, 310
MspA1I CMGCKG 1 cut(s) 83
MspI CCGG 1 cut(s) 215
NdeII GATC 1 cut(s) 175
NlaIV GGNNCC 1 cut(s) 123
PfeI GAWTC 1 cut(s) 86
PkrI GCNGC 1 cut(s) 34
PleI GAGTC 1 cut(s) 263
PpsI GAGTC 1 cut(s) 263
PpuMI RGGWCCY 1 cut(s) 121
PshBI ATTAAT 1 cut(s) 153
Psp5II RGGWCCY 1 cut(s) 121
PspN4I GGNNCC 1 cut(s) 123
PspPI GGNCC 2 cut(s) 121, 217
PspPPI RGGWCCY 1 cut(s) 121
PstNI CAGNNNCTG 1 cut(s) 258
PvuII CAGCTG 1 cut(s) 83
SaqAI TTAA 2 cut(s) 153, 310
SatI GCNGC 1 cut(s) 33
Sau3AI GATC 1 cut(s) 175
Sau96I GGNCC 2 cut(s) 121, 217
SchI GAGTC 1 cut(s) 264
SetI ASST 6 cut(s) 30, 85, 135, 222, 267, 281
SfaNI GCATC 1 cut(s) 60
SinI GGWCC 2 cut(s) 121, 217
Sse9I AATT 1 cut(s) 110
SspMI CTAG 2 cut(s) 48, 92
TaaI ACNGT 1 cut(s) 206
TasI AATT 1 cut(s) 110
TfiI GAWTC 1 cut(s) 86
Tru1I TTAA 2 cut(s) 153, 310
Tru9I TTAA 2 cut(s) 153, 310
TseI GCWGC 1 cut(s) 32
TspDTI ATGAA 3 cut(s) 83, 143, 257
TspGWI ACGGA 1 cut(s) 271
VpaK11BI GGWCC 2 cut(s) 121, 217
VspI ATTAAT 1 cut(s) 153
XspI CTAG 2 cut(s) 48, 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.