pycom02g15420

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
N/A
Physical Location & Seq
Reverse (-)
12251922 .. 12252332
411 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 411 bp
ATGAGGTGGCTGATCTTCCCTTCTTCCAGCACCATCTTCCGCTCTGTAATTTTCAACCAAATGCAGACGCCGGTAAAGCTGAGCACCAAGCTCGCGAACCCACTTCCCAATCCGATCCCGATCGATCGACAGAACCGAAAGCCCTTTGCTTTTCAGCGGCGGCAAAGGGTACCCATAAAGCTCCTTGTTCCCCTGGAACGACGTCGCATTGAATCTCGGCAAGTTCCCGCTCCGATTTCCCAGCGAGACCGGAATCGGGCCCGCGAGCTTGTTGTTGGAGACGTCGAAGGCGGAGAGGCGGACGAGGAGGCCCAATTGCTGGGGGATGGGGCCAGTGAGGGAGTTGTCGTGGAGGTCGATGACGTTGAGGTAGGCGCACAATGTGAGCTGCGGCGGAATGGGACCGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

15.33

Weight (kDa)

9.6

Isoelectric Point (pI)

56.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 205, 285
Acc65I GGTACC 1 cut(s) 169
AccB1I GGYRCC 1 cut(s) 169
AccB7I CCANNNNNTGG 1 cut(s) 319
AccBSI CCGCTC 2 cut(s) 42, 230
AccII CGCG 2 cut(s) 95, 264
AciI CCGC 9 cut(s) 40, 157, 160, 228, 262, 291, 299, 391, 394
AclWI GGATC 1 cut(s) 109
AcyI GRCGYC 3 cut(s) 68, 202, 282
AdeI CACNNNGTG 1 cut(s) 383
AfaI GTAC 1 cut(s) 171
AfiI CCNNNNNNNGG 2 cut(s) 256, 319
AgsI TTSAA 2 cut(s) 55, 212
AjnI CCWGG 1 cut(s) 192
AluBI AGCT 5 cut(s) 79, 91, 181, 268, 388
AluI AGCT 5 cut(s) 79, 91, 181, 268, 388
Alw21I GWGCWC 1 cut(s) 86
Alw26I GTCTC 2 cut(s) 240, 273
AlwI GGATC 1 cut(s) 109
AoxI GGCC 3 cut(s) 258, 309, 330
ApaI GGGCCC 1 cut(s) 262
ApeKI GCWGC 1 cut(s) 388
Asp718I GGTACC 1 cut(s) 169
AspLEI GCGC 1 cut(s) 377
AspS9I GGNCC 5 cut(s) 258, 259, 310, 330, 402
AvaII GGWCC 1 cut(s) 402
BaeGI GKGCMC 1 cut(s) 262
BanI GGYRCC 1 cut(s) 169
BanII GRGCYC 1 cut(s) 262
Bbv12I GWGCWC 1 cut(s) 86
BbvI GCAGC 1 cut(s) 375
BccI CCATC 2 cut(s) 41, 320
BcgI CGANNNNNNTGC 2 cut(s) 73, 107
BciT130I CCWGG 1 cut(s) 194
BcoDI GTCTC 2 cut(s) 240, 273
BisI GCNGC 4 cut(s) 158, 161, 389, 392
BlpI GCTNAGC 1 cut(s) 80
BlsI GCNGC 4 cut(s) 159, 162, 390, 393
Bme1390I CCNGG 1 cut(s) 194
Bme18I GGWCC 1 cut(s) 402
BmgT120I GGNCC 5 cut(s) 258, 259, 310, 330, 402
BmiI GGNNCC 4 cut(s) 171, 260, 331, 403
BmrFI CCNGG 1 cut(s) 194
Bpu1102I GCTNAGC 1 cut(s) 80
Bsa29I ATCGAT 1 cut(s) 123
BsaBI GATNNNNATC 1 cut(s) 119
BsaHI GRCGYC 3 cut(s) 68, 202, 282
BsaI GGTCTC 1 cut(s) 240
BsaJI CCNNGG 1 cut(s) 192
BsaWI WCCGGW 2 cut(s) 249, 404
BsaXI ACNNNNNCTCC 2 cut(s) 333, 363
Bsc4I CCNNNNNNNGG 2 cut(s) 256, 319
Bse118I RCCGGY 1 cut(s) 70
Bse1I ACTGG 1 cut(s) 333
Bse8I GATNNNNATC 1 cut(s) 119
BseBI CCWGG 1 cut(s) 194
BseCI ATCGAT 1 cut(s) 123
BseDI CCNNGG 1 cut(s) 192
BseGI GGATG 1 cut(s) 331
BseJI GATNNNNATC 1 cut(s) 119
BseLI CCNNNNNNNGG 2 cut(s) 256, 319
BseMII CTCAG 1 cut(s) 71
BseNI ACTGG 1 cut(s) 333
BseRI GAGGAG 1 cut(s) 320
BseSI GKGCMC 1 cut(s) 262
BseXI GCAGC 1 cut(s) 375
BseYI CCCAGC 2 cut(s) 240, 319
Bsh1236I CGCG 2 cut(s) 95, 264
Bsh1285I CGRYCG 2 cut(s) 123, 127
BshFI GGCC 3 cut(s) 260, 311, 332
BshNI GGYRCC 1 cut(s) 169
BshVI ATCGAT 1 cut(s) 123
BsiEI CGRYCG 2 cut(s) 123, 127
BsiHKAI GWGCWC 1 cut(s) 86
BsiSI CCGG 3 cut(s) 71, 250, 405
BslI CCNNNNNNNGG 2 cut(s) 256, 319
BsmAI GTCTC 2 cut(s) 240, 273
BsmBI CGTCTC 1 cut(s) 273
BsnI GGCC 3 cut(s) 260, 311, 332
Bso31I GGTCTC 1 cut(s) 240
Bsp120I GGGCCC 1 cut(s) 258
Bsp1286I GDGCHC 2 cut(s) 86, 262
Bsp143I GATC 4 cut(s) 12, 114, 120, 124
Bsp1720I GCTNAGC 1 cut(s) 80
Bsp68I TCGCGA 1 cut(s) 95
BspACI CCGC 9 cut(s) 40, 157, 160, 228, 262, 291, 299, 391, 394
BspANI GGCC 3 cut(s) 260, 311, 332
BspCNI CTCAG 1 cut(s) 72
BspDI ATCGAT 1 cut(s) 123
BspFNI CGCG 2 cut(s) 95, 264
BspLI GGNNCC 4 cut(s) 171, 260, 331, 403
BspPI GGATC 1 cut(s) 109
BspT107I GGYRCC 1 cut(s) 169
BspTNI GGTCTC 1 cut(s) 240
BsrBI CCGCTC 2 cut(s) 42, 230
BsrFI RCCGGY 1 cut(s) 70
BsrI ACTGG 1 cut(s) 333
BssAI RCCGGY 1 cut(s) 70
BssECI CCNNGG 1 cut(s) 192
BssMI GATC 4 cut(s) 12, 114, 120, 124
BssNI GRCGYC 3 cut(s) 68, 202, 282
Bst2UI CCWGG 1 cut(s) 194
BstACI GRCGYC 3 cut(s) 68, 202, 282
BstC8I GCNNGC 3 cut(s) 93, 262, 266
BstDEI CTNAG 1 cut(s) 80
BstF5I GGATG 1 cut(s) 331
BstFNI CGCG 2 cut(s) 95, 264
BstHHI GCGC 1 cut(s) 377
BstKTI GATC 4 cut(s) 15, 117, 123, 127
BstMAI GTCTC 2 cut(s) 240, 273
BstMBI GATC 4 cut(s) 12, 114, 120, 124
BstMCI CGRYCG 2 cut(s) 123, 127
BstMWI GCNNNNNNNGC 1 cut(s) 76
BstNI CCWGG 1 cut(s) 194
BstSCI CCNGG 1 cut(s) 192
BstSLI GKGCMC 1 cut(s) 262
BstUI CGCG 2 cut(s) 95, 264
BstV1I GCAGC 1 cut(s) 375
Bsu15I ATCGAT 1 cut(s) 123
BsuRI GGCC 3 cut(s) 260, 311, 332
BsuTUI ATCGAT 1 cut(s) 123
BtsCI GGATG 1 cut(s) 331
BtsIMutI CAGTG 1 cut(s) 340
BtuMI TCGCGA 1 cut(s) 95
Cac8I GCNNGC 3 cut(s) 93, 262, 266
CfoI GCGC 1 cut(s) 377
Cfr10I RCCGGY 1 cut(s) 70
Cfr13I GGNCC 5 cut(s) 258, 259, 310, 330, 402
ClaI ATCGAT 1 cut(s) 123
CseI GACGC 1 cut(s) 76
Csp6I GTAC 1 cut(s) 170
CviQI GTAC 1 cut(s) 170
DdeI CTNAG 1 cut(s) 80
DpnI GATC 4 cut(s) 14, 116, 122, 126
DpnII GATC 4 cut(s) 12, 114, 120, 124
DraIII CACNNNGTG 1 cut(s) 383
EciI GGCGGA 3 cut(s) 306, 314, 409
Eco24I GRGCYC 1 cut(s) 262
Eco31I GGTCTC 1 cut(s) 240
Eco47I GGWCC 1 cut(s) 402
EcoRII CCWGG 1 cut(s) 192
EcoT38I GRGCYC 1 cut(s) 262
Esp3I CGTCTC 1 cut(s) 273
FaiI YATR 1 cut(s) 176
FauI CCCGC 2 cut(s) 235, 269
Fnu4HI GCNGC 4 cut(s) 158, 161, 389, 392
FokI GGATG 1 cut(s) 338
FriOI GRGCYC 1 cut(s) 262
Fsp4HI GCNGC 4 cut(s) 158, 161, 389, 392
GlaI GCGC 1 cut(s) 376
GluI GCNGC 4 cut(s) 158, 161, 389, 392
GsaI CCCAGC 2 cut(s) 244, 323
HaeIII GGCC 3 cut(s) 260, 311, 332
HapII CCGG 3 cut(s) 71, 250, 405
HgaI GACGC 1 cut(s) 76
HhaI GCGC 1 cut(s) 377
Hin1I GRCGYC 3 cut(s) 68, 202, 282
Hin6I GCGC 1 cut(s) 375
HinP1I GCGC 1 cut(s) 375
HinfI GANTC 2 cut(s) 212, 253
HpaII CCGG 3 cut(s) 71, 250, 405
Hpy188I TCNGA 2 cut(s) 114, 234
Hpy188III TCNNGA 2 cut(s) 94, 118
Hpy99I CGWCG 3 cut(s) 204, 207, 287
HpyAV CCTTC 2 cut(s) 30, 281
HpyCH4IV ACGT 3 cut(s) 202, 282, 363
HpyCH4V TGCA 1 cut(s) 64
HpyF10VI GCNNNNNNNGC 1 cut(s) 76
HpyF3I CTNAG 1 cut(s) 80
HpySE526I ACGT 3 cut(s) 202, 282, 363
Hsp92I GRCGYC 3 cut(s) 68, 202, 282
HspAI GCGC 1 cut(s) 375
KpnI GGTACC 1 cut(s) 173
Kzo9I GATC 4 cut(s) 12, 114, 120, 124
LmnI GCTCC 2 cut(s) 186, 235
LpnPI CCDG 8 cut(s) 40, 84, 179, 206, 254, 263, 305, 346
Lsp1109I GCAGC 1 cut(s) 375
MaeII ACGT 3 cut(s) 202, 282, 363
MalI GATC 4 cut(s) 14, 116, 122, 126
MbiI CCGCTC 2 cut(s) 42, 230
MboI GATC 4 cut(s) 12, 114, 120, 124
MboII GAAGA 3 cut(s) 7, 15, 28
MfeI CAATTG 1 cut(s) 314
MhlI GDGCHC 2 cut(s) 86, 262
MluCI AATT 2 cut(s) 48, 314
MmeI TCCRAC 1 cut(s) 256
MnlI CCTC 6 cut(s) 289, 298, 301, 331, 346, 361
MspA1I CMGCKG 1 cut(s) 157
MspI CCGG 3 cut(s) 71, 250, 405
MspR9I CCNGG 1 cut(s) 194
MunI CAATTG 1 cut(s) 314
MvaI CCWGG 1 cut(s) 194
MvnI CGCG 2 cut(s) 95, 264
MwoI GCNNNNNNNGC 1 cut(s) 76
NdeII GATC 4 cut(s) 12, 114, 120, 124
NlaIV GGNNCC 4 cut(s) 171, 260, 331, 403
NmeAIII GCCGAG 1 cut(s) 196
NruI TCGCGA 1 cut(s) 95
PcsI WCGNNNNNNNCGW 2 cut(s) 133, 354
PfeI GAWTC 2 cut(s) 212, 253
PflMI CCANNNNNTGG 1 cut(s) 319
PkrI GCNGC 4 cut(s) 159, 162, 390, 393
Ple19I CGATCG 2 cut(s) 123, 127
Psp6I CCWGG 1 cut(s) 192
PspFI CCCAGC 2 cut(s) 240, 319
PspGI CCWGG 1 cut(s) 192
PspN4I GGNNCC 4 cut(s) 171, 260, 331, 403
PspOMI GGGCCC 1 cut(s) 258
PspPI GGNCC 5 cut(s) 258, 259, 310, 330, 402
PvuI CGATCG 2 cut(s) 123, 127
RruI TCGCGA 1 cut(s) 95
RsaI GTAC 1 cut(s) 171
RsaNI GTAC 1 cut(s) 170
SatI GCNGC 4 cut(s) 158, 161, 389, 392
Sau3AI GATC 4 cut(s) 12, 114, 120, 124
Sau96I GGNCC 5 cut(s) 258, 259, 310, 330, 402
ScrFI CCNGG 1 cut(s) 194
SduI GDGCHC 2 cut(s) 86, 262
SinI GGWCC 1 cut(s) 402
Sse9I AATT 2 cut(s) 48, 314
SsiI CCGC 9 cut(s) 40, 157, 160, 228, 262, 291, 299, 391, 394
StyD4I CCNGG 1 cut(s) 192
TaiI ACGT 3 cut(s) 205, 285, 366
TaqI TCGA 4 cut(s) 123, 127, 285, 357
TasI AATT 2 cut(s) 48, 314
TauI GCSGC 3 cut(s) 160, 163, 394
TfiI GAWTC 2 cut(s) 212, 253
TscAI CASTG 1 cut(s) 340
TseI GCWGC 1 cut(s) 388
TspRI CASTG 1 cut(s) 340
Van91I CCANNNNNTGG 1 cut(s) 319
VpaK11BI GGWCC 1 cut(s) 402
ZraI GACGTC 2 cut(s) 203, 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.