pycom02g16070

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
N/A
Physical Location & Seq
Forward (+)
13114219 .. 13115677
1459 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 483 bp
ATGTTTCTTCCGAATACCATGGAATGTTTGACGTCTTTAAAGAGCCTTATTTTAACAGGTTGCTCTGAACTTGATGATGTACCAGAGAATCTAAACTCTGTACAGTGCTTGGAGGAGCTTGATTTAAGTGGAACTGCTATAAGAGAATCGTCATTCATTGGGTGGATTTATCAATCAGCTTTCCATTCGATTGTTGGTGCCGGATGTAAAATTCTAGAGTGGTTCGACAATGCAGTTATCTCCAGGGATTCCATAGAAATCCCTATACCTCCAGATCTAAAAGGGGACAAGACGTGGATGAGGGTTGCTGCTGTTTTCACAATGAAGGAACATGATTGTTATATTGATGCACTATTGTCGTGCTACGACGTCCACAAGTACCAAATAATCCCTTCTGATGACTGCATTAAGCTACATGAAGTTGATAAAGCTACGTTCAAATCTGAATGGATTACTGTAGTTCATAACATTTTGAGATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

161

Amino Acids

18.2

Weight (kDa)

4.71

Isoelectric Point (pI)

43.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 35, 372
AccB1I GGYRCC 1 cut(s) 197
AcsI RAATTY 1 cut(s) 210
AcyI GRCGYC 2 cut(s) 32, 369
AfaI GTAC 3 cut(s) 81, 102, 380
AgsI TTSAA 1 cut(s) 439
AjiI CACGTC 1 cut(s) 294
AjnI CCWGG 1 cut(s) 242
AluBI AGCT 4 cut(s) 118, 179, 412, 431
AluI AGCT 4 cut(s) 118, 179, 412, 431
ApeKI GCWGC 1 cut(s) 308
ApoI RAATTY 1 cut(s) 210
BanI GGYRCC 1 cut(s) 197
BbvI GCAGC 1 cut(s) 295
BccI CCATC 1 cut(s) 471
BcgI CGANNNNNNTGC 2 cut(s) 339, 373
BciT130I CCWGG 1 cut(s) 244
BfaI CTAG 1 cut(s) 215
BfmI CTRYAG 1 cut(s) 456
BglII AGATCT 1 cut(s) 274
BisI GCNGC 1 cut(s) 309
BlsI GCNGC 1 cut(s) 310
Bme1390I CCNGG 1 cut(s) 244
BmgBI CACGTC 1 cut(s) 294
BmiI GGNNCC 1 cut(s) 199
BmrFI CCNGG 1 cut(s) 244
BmsI GCATC 1 cut(s) 337
BpmI CTGGAG 2 cut(s) 226, 255
BsaHI GRCGYC 2 cut(s) 32, 369
BsaJI CCNNGG 2 cut(s) 18, 243
BseBI CCWGG 1 cut(s) 244
BseDI CCNNGG 2 cut(s) 18, 243
BseGI GGATG 2 cut(s) 209, 303
BseRI GAGGAG 1 cut(s) 128
BseXI GCAGC 1 cut(s) 295
BshNI GGYRCC 1 cut(s) 197
BsiSI CCGG 1 cut(s) 201
BslFI GGGAC 1 cut(s) 299
BsmFI GGGAC 1 cut(s) 299
Bsp1407I TGTACA 1 cut(s) 100
Bsp143I GATC 1 cut(s) 274
Bsp19I CCATGG 1 cut(s) 18
BspLI GGNNCC 1 cut(s) 199
BspT107I GGYRCC 1 cut(s) 197
BsrGI TGTACA 1 cut(s) 100
BssECI CCNNGG 2 cut(s) 18, 243
BssMI GATC 1 cut(s) 274
BssNI GRCGYC 2 cut(s) 32, 369
BssT1I CCWWGG 1 cut(s) 18
Bst2UI CCWGG 1 cut(s) 244
Bst4CI ACNGT 2 cut(s) 105, 457
BstACI GRCGYC 2 cut(s) 32, 369
BstAUI TGTACA 1 cut(s) 100
BstDSI CCRYGG 1 cut(s) 18
BstF5I GGATG 2 cut(s) 209, 303
BstKTI GATC 1 cut(s) 277
BstMBI GATC 1 cut(s) 274
BstNI CCWGG 1 cut(s) 244
BstSCI CCNGG 1 cut(s) 242
BstSFI CTRYAG 1 cut(s) 456
BstV1I GCAGC 1 cut(s) 295
BstX2I RGATCY 1 cut(s) 274
BstYI RGATCY 1 cut(s) 274
BtgI CCRYGG 1 cut(s) 18
BtrI CACGTC 1 cut(s) 294
BtsCI GGATG 2 cut(s) 209, 303
BtsIMutI CAGTG 1 cut(s) 110
Csp6I GTAC 3 cut(s) 80, 101, 379
CviAII CATG 3 cut(s) 19, 332, 416
CviJI RGCY 5 cut(s) 45, 118, 179, 412, 431
CviKI_1 RGCY 5 cut(s) 45, 118, 179, 412, 431
CviQI GTAC 3 cut(s) 80, 101, 379
DpnI GATC 1 cut(s) 276
DpnII GATC 1 cut(s) 274
DraI TTTAAA 1 cut(s) 39
Eco130I CCWWGG 1 cut(s) 18
EcoRII CCWGG 1 cut(s) 242
EcoT14I CCWWGG 1 cut(s) 18
ErhI CCWWGG 1 cut(s) 18
FaeI CATG 3 cut(s) 22, 335, 419
FaiI YATR 8 cut(s) 20, 140, 254, 266, 333, 342, 417, 465
FaqI GGGAC 1 cut(s) 299
FatI CATG 3 cut(s) 18, 331, 415
Fnu4HI GCNGC 1 cut(s) 309
FokI GGATG 2 cut(s) 216, 310
Fsp4HI GCNGC 1 cut(s) 309
FspBI CTAG 1 cut(s) 215
GluI GCNGC 1 cut(s) 309
GsuI CTGGAG 2 cut(s) 226, 255
HapII CCGG 1 cut(s) 201
Hin1I GRCGYC 2 cut(s) 32, 369
Hin1II CATG 3 cut(s) 22, 335, 419
HinfI GANTC 3 cut(s) 88, 146, 248
HpaII CCGG 1 cut(s) 201
Hpy166II GTNNAC 1 cut(s) 373
Hpy188I TCNGA 4 cut(s) 12, 67, 397, 445
Hpy188III TCNNGA 2 cut(s) 215, 272
Hpy8I GTNNAC 1 cut(s) 373
Hpy99I CGWCG 1 cut(s) 371
HpyAV CCTTC 2 cut(s) 319, 402
HpyCH4III ACNGT 2 cut(s) 105, 457
HpyCH4IV ACGT 4 cut(s) 32, 293, 369, 434
HpyCH4V TGCA 3 cut(s) 233, 350, 405
HpySE526I ACGT 4 cut(s) 32, 293, 369, 434
Hsp92I GRCGYC 2 cut(s) 32, 369
Hsp92II CATG 3 cut(s) 22, 335, 419
Kzo9I GATC 1 cut(s) 274
LmnI GCTCC 1 cut(s) 115
LpnPI CCDG 6 cut(s) 42, 96, 214, 229, 256, 285
Lsp1109I GCAGC 1 cut(s) 295
LweI GCATC 1 cut(s) 337
MaeI CTAG 1 cut(s) 215
MaeII ACGT 4 cut(s) 32, 293, 369, 434
MalI GATC 1 cut(s) 276
MboI GATC 1 cut(s) 274
MflI RGATCY 1 cut(s) 274
MluCI AATT 1 cut(s) 210
MnlI CCTC 3 cut(s) 106, 279, 294
MseI TTAA 4 cut(s) 38, 53, 125, 408
MspI CCGG 1 cut(s) 201
MspR9I CCNGG 1 cut(s) 244
MvaI CCWGG 1 cut(s) 244
NcoI CCATGG 1 cut(s) 18
NdeII GATC 1 cut(s) 274
NlaIII CATG 3 cut(s) 22, 335, 419
NlaIV GGNNCC 1 cut(s) 199
PfeI GAWTC 3 cut(s) 88, 146, 248
PkrI GCNGC 1 cut(s) 310
Psp6I CCWGG 1 cut(s) 242
PspGI CCWGG 1 cut(s) 242
PspN4I GGNNCC 1 cut(s) 199
PsuI RGATCY 1 cut(s) 274
RsaI GTAC 3 cut(s) 81, 102, 380
RsaNI GTAC 3 cut(s) 80, 101, 379
SaqAI TTAA 4 cut(s) 38, 53, 125, 408
SatI GCNGC 1 cut(s) 309
Sau3AI GATC 1 cut(s) 274
ScrFI CCNGG 1 cut(s) 244
SfaNI GCATC 1 cut(s) 337
SfcI CTRYAG 1 cut(s) 456
Sse9I AATT 1 cut(s) 210
SspMI CTAG 1 cut(s) 215
StyD4I CCNGG 1 cut(s) 242
StyI CCWWGG 1 cut(s) 18
TaaI ACNGT 2 cut(s) 105, 457
TaiI ACGT 4 cut(s) 35, 296, 372, 437
TaqI TCGA 2 cut(s) 188, 225
TasI AATT 1 cut(s) 210
TatI WGTACW 1 cut(s) 100
TfiI GAWTC 3 cut(s) 88, 146, 248
Tru1I TTAA 4 cut(s) 38, 53, 125, 408
Tru9I TTAA 4 cut(s) 38, 53, 125, 408
TscAI CASTG 1 cut(s) 110
TseI GCWGC 1 cut(s) 308
TspDTI ATGAA 4 cut(s) 145, 338, 432, 452
TspRI CASTG 1 cut(s) 110
XapI RAATTY 1 cut(s) 210
XbaI TCTAGA 1 cut(s) 214
XcmI CCANNNNNNNNNTGG 1 cut(s) 191
XspI CTAG 1 cut(s) 215
ZraI GACGTC 2 cut(s) 33, 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.