Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

13441621 .. 13442133

Gene Structure 513 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGAAGAGGTTGGAGAAGAATACTTGGCTGACCTAATCCATAGAAACCTGGTTCAAGTGTCGAAAGTTTACATTGATGGAAAAGCTAGAAGCTGTCGTGTTCATGATCTTTTGCATGAAGTCCTCCGAAGAAAGAGTGCCGGTTCGAGCTTCTATCCCGTGTTATCAGAAGATGAGTCAACTTTTGAACCTGTAACTCAACGTCTCTCGATAGACAGCAGTCCCTCTGAAGCCTTGAGAAGCATTACACAGTCTCATATCCGTTTCGTATTTACTTTCAACCAAGCAAAATGGCCCAAGTCTTTTCTCAACACATGGAGTGGAAACTCAAAACTTGTGAAAGTGTTGGATTTCACAGATGCTCCACTCAGTCATCTTCCGAAATACATGGGGTATTTGTATCTCTTGAAGTACTTAAGCCTAAGGAATACGAAAGTGAAGTTGCTTCCGGAGTTCATTGGCAATCTGCAAAACTTAGAAAACCTGGGATCTGAAACAGTATCTGGTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009626 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0033554 GO:0034050 GO:0036094 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

171

Amino Acids

19.38

Weight (kDa)

7.85

Isoelectric Point (pI)

52.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_DRP	PF23559	1 - 41	8.6e-10	Disease resistance protein Winged helix domain
LRR_14	PF23598	111 - 162	5.8e-08	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	448
AclWI	GGATC	1 cut(s)	496
AcuI	CTGAAG	1 cut(s)	249
AfaI	GTAC	1 cut(s)	413
AflII	CTTAAG	1 cut(s)	415
AgsI	TTSAA	4 cut(s)	56, 188, 280, 409
AjnI	CCWGG	2 cut(s)	48, 483
AluBI	AGCT	3 cut(s)	86, 93, 150
AluI	AGCT	3 cut(s)	86, 93, 150
Alw26I	GTCTC	2 cut(s)	209, 258
AlwI	GGATC	1 cut(s)	496
AlwNI	CAGNNNCTG	1 cut(s)	503
Aor13HI	TCCGGA	1 cut(s)	448
AoxI	GGCC	1 cut(s)	293
AspS9I	GGNCC	1 cut(s)	294
AxyI	CCTNAGG	1 cut(s)	422
BccI	CCATC	1 cut(s)	71
BciT130I	CCWGG	2 cut(s)	50, 485
BcoDI	GTCTC	2 cut(s)	209, 258
BfaI	CTAG	1 cut(s)	87
BfrI	CTTAAG	1 cut(s)	415
BmcAI	AGTACT	1 cut(s)	413
Bme1390I	CCNGG	2 cut(s)	50, 485
BmgT120I	GGNCC	1 cut(s)	294
BmrFI	CCNGG	2 cut(s)	50, 485
BmsI	GCATC	1 cut(s)	349
BoxI	GACNNNNGTC	1 cut(s)	219
BpuEI	CTTGAG	1 cut(s)	256
BsaJI	CCNNGG	1 cut(s)	484
BsaWI	WCCGGW	1 cut(s)	448
BsaXI	ACNNNNNCTCC	2 cut(s)	346, 376
Bse118I	RCCGGY	1 cut(s)	140
Bse21I	CCTNAGG	1 cut(s)	422
BseAI	TCCGGA	1 cut(s)	448
BseBI	CCWGG	2 cut(s)	50, 485
BseDI	CCNNGG	1 cut(s)	484
BseMII	CTCAG	1 cut(s)	382
BshFI	GGCC	1 cut(s)	295
BsiSI	CCGG	2 cut(s)	141, 449
BslFI	GGGAC	1 cut(s)	207
BsmAI	GTCTC	2 cut(s)	209, 258
BsmBI	CGTCTC	1 cut(s)	209
BsmFI	GGGAC	1 cut(s)	207
BsnI	GGCC	1 cut(s)	295
Bsp13I	TCCGGA	1 cut(s)	448
Bsp143I	GATC	2 cut(s)	106, 488
BspANI	GGCC	1 cut(s)	295
BspCNI	CTCAG	1 cut(s)	381
BspEI	TCCGGA	1 cut(s)	448
BspHI	TCATGA	1 cut(s)	103
BspPI	GGATC	1 cut(s)	496
BspTI	CTTAAG	1 cut(s)	415
BsrFI	RCCGGY	1 cut(s)	140
BssAI	RCCGGY	1 cut(s)	140
BssECI	CCNNGG	1 cut(s)	484
BssMI	GATC	2 cut(s)	106, 488
Bst2UI	CCWGG	2 cut(s)	50, 485
Bst4CI	ACNGT	2 cut(s)	252, 499
BstAFI	CTTAAG	1 cut(s)	415
BstDEI	CTNAG	3 cut(s)	368, 422, 475
BstKTI	GATC	2 cut(s)	109, 491
BstMAI	GTCTC	2 cut(s)	209, 258
BstMBI	GATC	2 cut(s)	106, 488
BstNI	CCWGG	2 cut(s)	50, 485
BstPAI	GACNNNNGTC	1 cut(s)	219
BstSCI	CCNGG	2 cut(s)	48, 483
BstX2I	RGATCY	1 cut(s)	488
BstYI	RGATCY	1 cut(s)	488
Bsu36I	CCTNAGG	1 cut(s)	422
BsuRI	GGCC	1 cut(s)	295
CaiI	CAGNNNCTG	1 cut(s)	503
CciI	TCATGA	1 cut(s)	103
Cfr10I	RCCGGY	1 cut(s)	140
Cfr13I	GGNCC	1 cut(s)	294
CsiI	ACCWGGT	1 cut(s)	48
Csp6I	GTAC	1 cut(s)	412
CviAII	CATG	4 cut(s)	104, 116, 315, 388
CviJI	RGCY	7 cut(s)	29, 86, 93, 150, 233, 295, 420
CviKI_1	RGCY	7 cut(s)	29, 86, 93, 150, 233, 295, 420
CviQI	GTAC	1 cut(s)	412
DdeI	CTNAG	3 cut(s)	368, 422, 475
DpnI	GATC	2 cut(s)	108, 490
DpnII	GATC	2 cut(s)	106, 488
Eco57I	CTGAAG	1 cut(s)	249
Eco81I	CCTNAGG	1 cut(s)	422
EcoRII	CCWGG	2 cut(s)	48, 483
Esp3I	CGTCTC	1 cut(s)	209
FaeI	CATG	4 cut(s)	107, 119, 318, 391
FaiI	YATR	7 cut(s)	42, 105, 117, 258, 316, 389, 511
FaqI	GGGAC	1 cut(s)	207
FatI	CATG	4 cut(s)	103, 115, 314, 387
FspBI	CTAG	1 cut(s)	87
HaeIII	GGCC	1 cut(s)	295
HapII	CCGG	2 cut(s)	141, 449
Hin1II	CATG	4 cut(s)	107, 119, 318, 391
HincII	GTYRAC	1 cut(s)	180
HindII	GTYRAC	1 cut(s)	180
HinfI	GANTC	1 cut(s)	176
HpaII	CCGG	2 cut(s)	141, 449
Hpy166II	GTNNAC	2 cut(s)	70, 180
Hpy188I	TCNGA	5 cut(s)	128, 169, 229, 381, 493
Hpy188III	TCNNGA	4 cut(s)	104, 208, 406, 449
Hpy8I	GTNNAC	2 cut(s)	70, 180
HpyCH4III	ACNGT	2 cut(s)	252, 499
HpyCH4IV	ACGT	1 cut(s)	202
HpyCH4V	TGCA	2 cut(s)	115, 469
HpyF3I	CTNAG	3 cut(s)	368, 422, 475
HpySE526I	ACGT	1 cut(s)	202
Hsp92II	CATG	4 cut(s)	107, 119, 318, 391
Kpn2I	TCCGGA	1 cut(s)	448
Kzo9I	GATC	2 cut(s)	106, 488
LmnI	GCTCC	1 cut(s)	367
LpnPI	CCDG	8 cut(s)	35, 62, 154, 204, 462, 470, 489, 497
LweI	GCATC	1 cut(s)	349
MabI	ACCWGGT	1 cut(s)	48
MaeI	CTAG	1 cut(s)	87
MaeII	ACGT	1 cut(s)	202
MaeIII	GTNAC	1 cut(s)	193
MalI	GATC	2 cut(s)	108, 490
MboI	GATC	2 cut(s)	106, 488
MboII	GAAGA	5 cut(s)	17, 29, 141, 182, 368
MflI	RGATCY	1 cut(s)	488
MlyI	GAGTC	1 cut(s)	185
MmeI	TCCRAC	1 cut(s)	327
MnlI	CCTC	2 cut(s)	134, 235
MroI	TCCGGA	1 cut(s)	448
MseI	TTAA	1 cut(s)	416
MspCI	CTTAAG	1 cut(s)	415
MspI	CCGG	2 cut(s)	141, 449
MspR9I	CCNGG	2 cut(s)	50, 485
MvaI	CCWGG	2 cut(s)	50, 485
NdeII	GATC	2 cut(s)	106, 488
NlaIII	CATG	4 cut(s)	107, 119, 318, 391
PagI	TCATGA	1 cut(s)	103
PleI	GAGTC	1 cut(s)	184
PpsI	GAGTC	1 cut(s)	184
PshAI	GACNNNNGTC	1 cut(s)	219
Psp6I	CCWGG	2 cut(s)	48, 483
PspGI	CCWGG	2 cut(s)	48, 483
PspPI	GGNCC	1 cut(s)	294
PstNI	CAGNNNCTG	1 cut(s)	503
PsuI	RGATCY	1 cut(s)	488
RsaI	GTAC	1 cut(s)	413
RsaNI	GTAC	1 cut(s)	412
SaqAI	TTAA	1 cut(s)	416
Sau3AI	GATC	2 cut(s)	106, 488
Sau96I	GGNCC	1 cut(s)	294
ScaI	AGTACT	1 cut(s)	413
SchI	GAGTC	1 cut(s)	185
ScrFI	CCNGG	2 cut(s)	50, 485
SetI	ASST	9 cut(s)	12, 36, 51, 88, 95, 152, 193, 205, 486
SexAI	ACCWGGT	1 cut(s)	48
SfaNI	GCATC	1 cut(s)	349
SmlI	CTYRAG	2 cut(s)	235, 415
SmoI	CTYRAG	2 cut(s)	235, 415
SspMI	CTAG	1 cut(s)	87
StyD4I	CCNGG	2 cut(s)	48, 483
TaaI	ACNGT	2 cut(s)	252, 499
TaiI	ACGT	1 cut(s)	205
TaqI	TCGA	3 cut(s)	62, 146, 209
TatI	WGTACW	1 cut(s)	411
Tru1I	TTAA	1 cut(s)	416
Tru9I	TTAA	1 cut(s)	416
TspDTI	ATGAA	3 cut(s)	92, 132, 445
TspGWI	ACGGA	1 cut(s)	251
Vha464I	CTTAAG	1 cut(s)	415
XspI	CTAG	1 cut(s)	87
ZrmI	AGTACT	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.