Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

13666850 .. 13670407

Gene Structure 3558 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGATTATATGGAAGCAGTTAAGGAGCTGGAGGAGAAGTTGGTGTCAAATCAGAAGCCAGACCATGAGGGCCTGGTTGATATTAAATGTAACGGAGAGGGGTCCGGGCTTTCTCCTTCTAAGGAAGTGGCTGAGTTACAAGAGTTGCTTCAAAAAGAAATTGACCTCAGAAAGAAGGCTGAGGAGGAGCTGAAAAATCTCAAAAGCCTAGGGCTATATTCACAATCACAAGCTGGTGGAGATGCGGAATTTTTAAAGGTTCATAAACTTCTGGAAGAGGAAGCTGAACATAAGAAGAAACTTGAAGAAGAAATAGTAATTTTACGCAGTCAGTTGTTGCAGTCGAATTTTGAAGCTGAGCAGATGAGAAGGTGTCTTGATAGAAGCGGGTCTGGAAATGGGTTTACTGCTATAGATTCTTCTGCACCTTCAGTTAGGCATTCCTATCCCAGAGACACTGGGAATGGACACAAGGCACCAGTTTCCACACTCTTTGAACAAGTTGGATTGCAAAAGATTTTGTCCTTACTTGAGTCGGATGATGCTAATGTTCGCATTCATGCTGTAAAAGTGGTAGCCAACTTAGCGGCTGAAGAGGCAAATCAGAAAAGGATAGTTGAAGCTGGTGGTCTTACTTCCTTGCTGATGCTTCTTAGAAGCTTTGAGGACGAAACCGTTCGAAGAGTGGCAGCTGGTGCCATTGCGAATCTTGCAATGAATGAAGCCAATCAAGAAATTATAATGCAGGAAGGTGGGATTAGTTTGTTAGCAACGACAGCCGCTGATGCTGATGATGCTCAAACCCTACGCATGGTTGCTGGAGCTATTGCTAATTTATGCGGCAATGATAAGCTACAAATGAAGCTAAGGTCTGAAGGTGGTATTAAGGCGTTGCTAGGAATTGTGAGGTGCGGGCATCCTGATGTTCTTTCCCAAGTGGCACGTGGAATTGCTAACTTTGCAAAATGTGAATCACGAGCGTGTACTCAAGGGATAAAGAATGGAAGATCGATCATGTATAGAAGATGGTGCACTTCCATGGATTGTACAAAATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04144 ko04728 map04144 map04728

Pfam Domains

Protein Families

Arm Kinesin

Protein Analysis

353

Amino Acids

38.46

Weight (kDa)

5.67

Isoelectric Point (pI)

52.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARM_ARMC5	PF24768	191 - 337	7e-16	ARMC5
Arm	PF00514	201 - 238	2.8e-06	Armadillo/beta-catenin-like repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	740
AccB1I	GGYRCC	2 cut(s)	475, 695
AciI	CCGC	6 cut(s)	245, 387, 587, 780, 840, 912
AcsI	RAATTY	2 cut(s)	248, 346
AcuI	CTGAAG	3 cut(s)	414, 612, 894
AcvI	CACGTG	1 cut(s)	944
AfaI	GTAC	2 cut(s)	985, 1048
AfiI	CCNNNNNNNGG	1 cut(s)	811
AgsI	TTSAA	5 cut(s)	152, 305, 353, 497, 620
AjnI	CCWGG	1 cut(s)	72
AleI	CACNNNNGTG	1 cut(s)	979
Alw21I	GWGCWC	1 cut(s)	1034
Alw26I	GTCTC	1 cut(s)	447
Alw44I	GTGCAC	1 cut(s)	1030
AlwNI	CAGNNNCTG	1 cut(s)	782
AoxI	GGCC	1 cut(s)	70
ApaLI	GTGCAC	1 cut(s)	1030
ApeKI	GCWGC	1 cut(s)	689
ApoI	RAATTY	2 cut(s)	248, 346
Asp700I	GAANNNNTTC	1 cut(s)	675
AspA2I	CCTAGG	1 cut(s)	208
AspS9I	GGNCC	2 cut(s)	70, 102
AsuC2I	CCSGG	1 cut(s)	106
AsuII	TTCGAA	1 cut(s)	679
AvaII	GGWCC	1 cut(s)	102
AvrII	CCTAGG	1 cut(s)	208
BaeGI	GKGCMC	1 cut(s)	1034
BanI	GGYRCC	2 cut(s)	475, 695
BauI	CACGAG	1 cut(s)	975
BbrPI	CACGTG	1 cut(s)	944
Bbv12I	GWGCWC	1 cut(s)	1034
BbvCI	CCTCAGC	1 cut(s)	180
BbvI	GCAGC	1 cut(s)	701
BccI	CCATC	1 cut(s)	1020
BciT130I	CCWGG	1 cut(s)	74
BcnI	CCSGG	1 cut(s)	106
BcoDI	GTCTC	1 cut(s)	447
BfaI	CTAG	2 cut(s)	209, 896
BfmI	CTRYAG	1 cut(s)	411
BisI	GCNGC	4 cut(s)	588, 690, 780, 841
BlnI	CCTAGG	1 cut(s)	208
BlpI	GCTNAGC	1 cut(s)	357
BlsI	GCNGC	4 cut(s)	589, 691, 781, 842
Bme1390I	CCNGG	2 cut(s)	74, 106
Bme18I	GGWCC	1 cut(s)	102
BmgT120I	GGNCC	2 cut(s)	70, 102
BmiI	GGNNCC	3 cut(s)	103, 477, 697
BmrFI	CCNGG	2 cut(s)	74, 106
BmrI	ACTGGG	1 cut(s)	468
BmsI	GCATC	6 cut(s)	232, 532, 636, 775, 784, 925
BmuI	ACTGGG	1 cut(s)	468
BpmI	CTGGAG	2 cut(s)	50, 840
Bpu10I	CCTNAGC	2 cut(s)	180, 866
Bpu1102I	GCTNAGC	1 cut(s)	357
Bpu14I	TTCGAA	1 cut(s)	679
BpuEI	CTTGAG	2 cut(s)	551, 972
BpuMI	CCSGG	1 cut(s)	106
Bsa29I	ATCGAT	1 cut(s)	1010
BsaAI	YACGTR	1 cut(s)	944
BsaJI	CCNNGG	2 cut(s)	208, 1038
BsaXI	ACNNNNNCTCC	2 cut(s)	23, 53
Bsc4I	CCNNNNNNNGG	1 cut(s)	811
Bse1I	ACTGG	2 cut(s)	463, 479
Bse3DI	GCAATG	3 cut(s)	699, 720, 850
BseBI	CCWGG	1 cut(s)	74
BseCI	ATCGAT	1 cut(s)	1010
BseDI	CCNNGG	2 cut(s)	208, 1038
BseGI	GGATG	2 cut(s)	544, 916
BseLI	CCNNNNNNNGG	1 cut(s)	811
BseMI	GCAATG	3 cut(s)	699, 720, 850
BseMII	CTCAG	4 cut(s)	123, 171, 181, 348
BseNI	ACTGG	2 cut(s)	463, 479
BseRI	GAGGAG	3 cut(s)	47, 197, 200
BseSI	GKGCMC	1 cut(s)	1034
BseXI	GCAGC	1 cut(s)	701
BsgI	GTGCAG	1 cut(s)	408
BshFI	GGCC	1 cut(s)	72
BshNI	GGYRCC	2 cut(s)	475, 695
BshVI	ATCGAT	1 cut(s)	1010
BsiHKAI	GWGCWC	1 cut(s)	1034
BsiSI	CCGG	1 cut(s)	105
BslI	CCNNNNNNNGG	1 cut(s)	811
BsmAI	GTCTC	1 cut(s)	447
BsmI	GAATGC	2 cut(s)	439, 555
BsnI	GGCC	1 cut(s)	72
Bsp119I	TTCGAA	1 cut(s)	679
Bsp1286I	GDGCHC	1 cut(s)	1034
Bsp1407I	TGTACA	1 cut(s)	1046
Bsp143I	GATC	2 cut(s)	1007, 1011
Bsp1720I	GCTNAGC	1 cut(s)	357
Bsp19I	CCATGG	1 cut(s)	1038
BspACI	CCGC	6 cut(s)	245, 387, 587, 780, 840, 912
BspANI	GGCC	1 cut(s)	72
BspCNI	CTCAG	4 cut(s)	124, 172, 180, 349
BspDI	ATCGAT	1 cut(s)	1010
BspLI	GGNNCC	3 cut(s)	103, 477, 697
BspT104I	TTCGAA	1 cut(s)	679
BspT107I	GGYRCC	2 cut(s)	475, 695
BsrDI	GCAATG	3 cut(s)	699, 720, 850
BsrGI	TGTACA	1 cut(s)	1046
BsrI	ACTGG	2 cut(s)	463, 479
BssECI	CCNNGG	2 cut(s)	208, 1038
BssMI	GATC	2 cut(s)	1007, 1011
BssSI	CACGAG	1 cut(s)	975
BssT1I	CCWWGG	2 cut(s)	208, 1038
Bst2BI	CACGAG	1 cut(s)	975
Bst2UI	CCWGG	1 cut(s)	74
Bst4CI	ACNGT	1 cut(s)	676
Bst6I	CTCTTC	3 cut(s)	270, 588, 676
BstAPI	GCANNNNNTGC	1 cut(s)	695
BstAUI	TGTACA	1 cut(s)	1046
BstBAI	YACGTR	1 cut(s)	944
BstBI	TTCGAA	1 cut(s)	679
BstC8I	GCNNGC	1 cut(s)	914
BstDEI	CTNAG	8 cut(s)	120, 132, 167, 180, 357, 583, 653, 866
BstDSI	CCRYGG	1 cut(s)	1038
BstF5I	GGATG	2 cut(s)	544, 916
BstKTI	GATC	2 cut(s)	1010, 1014
BstMAI	GTCTC	1 cut(s)	447
BstMBI	GATC	2 cut(s)	1007, 1011
BstMWI	GCNNNNNNNGC	8 cut(s)	584, 596, 695, 710, 776, 785, 794, 959
BstNI	CCWGG	1 cut(s)	74
BstSCI	CCNGG	2 cut(s)	72, 104
BstSFI	CTRYAG	1 cut(s)	411
BstSLI	GKGCMC	1 cut(s)	1034
BstV1I	GCAGC	1 cut(s)	701
Bsu15I	ATCGAT	1 cut(s)	1010
BsuRI	GGCC	1 cut(s)	72
BsuTUI	ATCGAT	1 cut(s)	1010
BtgI	CCRYGG	1 cut(s)	1038
BtsCI	GGATG	2 cut(s)	544, 916
BtsIMutI	CAGTG	1 cut(s)	456
Cac8I	GCNNGC	1 cut(s)	914
CaiI	CAGNNNCTG	1 cut(s)	782
Cfr13I	GGNCC	2 cut(s)	70, 102
ClaI	ATCGAT	1 cut(s)	1010
Csp6I	GTAC	2 cut(s)	984, 1047
CspCI	CAANNNNNGTGG	2 cut(s)	475, 510
CviAII	CATG	5 cut(s)	65, 560, 811, 1015, 1039
CviQI	GTAC	2 cut(s)	984, 1047
DdeI	CTNAG	8 cut(s)	120, 132, 167, 180, 357, 583, 653, 866
DpnI	GATC	2 cut(s)	1009, 1013
DpnII	GATC	2 cut(s)	1007, 1011
DraI	TTTAAA	1 cut(s)	255
Eam1104I	CTCTTC	3 cut(s)	270, 588, 676
EarI	CTCTTC	3 cut(s)	270, 588, 676
Eco130I	CCWWGG	2 cut(s)	208, 1038
Eco47I	GGWCC	1 cut(s)	102
Eco57I	CTGAAG	3 cut(s)	414, 612, 894
Eco72I	CACGTG	1 cut(s)	944
EcoO109I	RGGNCCY	1 cut(s)	70
EcoRII	CCWGG	1 cut(s)	72
EcoT14I	CCWWGG	2 cut(s)	208, 1038
ErhI	CCWWGG	2 cut(s)	208, 1038
FaeI	CATG	5 cut(s)	68, 563, 814, 1018, 1042
FalI	AAGNNNNNCTT	2 cut(s)	132, 164
FatI	CATG	5 cut(s)	64, 559, 810, 1014, 1038
FauI	CCCGC	2 cut(s)	380, 905
Fnu4HI	GCNGC	4 cut(s)	588, 690, 780, 841
FokI	GGATG	2 cut(s)	551, 903
Fsp4HI	GCNGC	4 cut(s)	588, 690, 780, 841
FspBI	CTAG	2 cut(s)	209, 896
GluI	GCNGC	4 cut(s)	588, 690, 780, 841
GsuI	CTGGAG	2 cut(s)	50, 840
HaeIII	GGCC	1 cut(s)	72
HapII	CCGG	1 cut(s)	105
Hin1II	CATG	5 cut(s)	68, 563, 814, 1018, 1042
HindIII	AAGCTT	1 cut(s)	658
HinfI	GANTC	4 cut(s)	416, 533, 706, 971
HpaII	CCGG	1 cut(s)	105
Hpy166II	GTNNAC	3 cut(s)	405, 984, 1032
Hpy188I	TCNGA	5 cut(s)	54, 170, 538, 606, 874
Hpy188III	TCNNGA	6 cut(s)	272, 377, 393, 731, 920, 975
Hpy8I	GTNNAC	3 cut(s)	405, 984, 1032
HpyAV	CCTTC	6 cut(s)	126, 169, 363, 438, 743, 869
HpyCH4III	ACNGT	1 cut(s)	676
HpyCH4IV	ACGT	1 cut(s)	943
HpyCH4V	TGCA	7 cut(s)	340, 425, 511, 713, 745, 962, 1032
HpyF10VI	GCNNNNNNNGC	8 cut(s)	584, 596, 695, 710, 776, 785, 794, 959
HpyF3I	CTNAG	8 cut(s)	120, 132, 167, 180, 357, 583, 653, 866
HpySE526I	ACGT	1 cut(s)	943
Hsp92II	CATG	5 cut(s)	68, 563, 814, 1018, 1042
Kzo9I	GATC	2 cut(s)	1007, 1011
LmnI	GCTCC	3 cut(s)	25, 187, 821
Lsp1109I	GCAGC	1 cut(s)	701
LweI	GCATC	6 cut(s)	232, 532, 636, 775, 784, 925
MaeI	CTAG	2 cut(s)	209, 896
MaeII	ACGT	1 cut(s)	943
MaeIII	GTNAC	2 cut(s)	89, 135
MalI	GATC	2 cut(s)	1009, 1013
MboI	GATC	2 cut(s)	1007, 1011
MboII	GAAGA	9 cut(s)	287, 307, 317, 320, 411, 605, 693, 1017, 1035
MhlI	GDGCHC	1 cut(s)	1034
MluCI	AATT	8 cut(s)	159, 248, 318, 346, 735, 832, 900, 948
MlyI	GAGTC	1 cut(s)	542
MmeI	TCCRAC	2 cut(s)	484, 516
MroXI	GAANNNNTTC	1 cut(s)	675
MseI	TTAA	4 cut(s)	21, 84, 254, 885
MslI	CAYNNNNRTG	3 cut(s)	921, 979, 1037
MspA1I	CMGCKG	2 cut(s)	692, 782
MspI	CCGG	1 cut(s)	105
MspR9I	CCNGG	2 cut(s)	74, 106
Mva1269I	GAATGC	2 cut(s)	439, 555
MvaI	CCWGG	1 cut(s)	74
MwoI	GCNNNNNNNGC	8 cut(s)	584, 596, 695, 710, 776, 785, 794, 959
NciI	CCSGG	1 cut(s)	106
NcoI	CCATGG	1 cut(s)	1038
NdeII	GATC	2 cut(s)	1007, 1011
NlaIII	CATG	5 cut(s)	68, 563, 814, 1018, 1042
NlaIV	GGNNCC	3 cut(s)	103, 477, 697
NspV	TTCGAA	1 cut(s)	679
OliI	CACNNNNGTG	1 cut(s)	979
PctI	GAATGC	2 cut(s)	439, 555
PdmI	GAANNNNTTC	1 cut(s)	675
PfeI	GAWTC	3 cut(s)	416, 706, 971
PkrI	GCNGC	4 cut(s)	589, 691, 781, 842
PleI	GAGTC	1 cut(s)	541
PmaCI	CACGTG	1 cut(s)	944
PmlI	CACGTG	1 cut(s)	944
PpsI	GAGTC	1 cut(s)	541
Ppu21I	YACGTR	1 cut(s)	944
PsiI	TTATAA	1 cut(s)	740
Psp6I	CCWGG	1 cut(s)	72
PspCI	CACGTG	1 cut(s)	944
PspGI	CCWGG	1 cut(s)	72
PspN4I	GGNNCC	3 cut(s)	103, 477, 697
PspPI	GGNCC	2 cut(s)	70, 102
PstNI	CAGNNNCTG	1 cut(s)	782
PvuII	CAGCTG	1 cut(s)	692
RsaI	GTAC	2 cut(s)	985, 1048
RsaNI	GTAC	2 cut(s)	984, 1047
RseI	CAYNNNNRTG	3 cut(s)	921, 979, 1037
SaqAI	TTAA	4 cut(s)	21, 84, 254, 885
SatI	GCNGC	4 cut(s)	588, 690, 780, 841
Sau3AI	GATC	2 cut(s)	1007, 1011
Sau96I	GGNCC	2 cut(s)	70, 102
SchI	GAGTC	1 cut(s)	542
ScrFI	CCNGG	2 cut(s)	74, 106
SduI	GDGCHC	1 cut(s)	1034
SfaNI	GCATC	6 cut(s)	232, 532, 636, 775, 784, 925
SfcI	CTRYAG	1 cut(s)	411
SfuI	TTCGAA	1 cut(s)	679
SinI	GGWCC	1 cut(s)	102
SmiMI	CAYNNNNRTG	3 cut(s)	921, 979, 1037
SmlI	CTYRAG	2 cut(s)	530, 987
SmoI	CTYRAG	2 cut(s)	530, 987
Sse9I	AATT	8 cut(s)	159, 248, 318, 346, 735, 832, 900, 948
SsiI	CCGC	6 cut(s)	245, 387, 587, 780, 840, 912
SspMI	CTAG	2 cut(s)	209, 896
StyD4I	CCNGG	2 cut(s)	72, 104
StyI	CCWWGG	2 cut(s)	208, 1038
TaaI	ACNGT	1 cut(s)	676
TaiI	ACGT	1 cut(s)	946
TaqI	TCGA	3 cut(s)	344, 679, 1010
TasI	AATT	8 cut(s)	159, 248, 318, 346, 735, 832, 900, 948
TatI	WGTACW	2 cut(s)	983, 1046
TauI	GCSGC	3 cut(s)	590, 782, 843
TfiI	GAWTC	3 cut(s)	416, 706, 971
Tru1I	TTAA	4 cut(s)	21, 84, 254, 885
Tru9I	TTAA	4 cut(s)	21, 84, 254, 885
TscAI	CASTG	1 cut(s)	463
TseI	GCWGC	1 cut(s)	689
TspDTI	ATGAA	5 cut(s)	251, 548, 731, 735, 875
TspGWI	ACGGA	1 cut(s)	108
TspRI	CASTG	1 cut(s)	463
VneI	GTGCAC	1 cut(s)	1030
VpaK11BI	GGWCC	1 cut(s)	102
XapI	RAATTY	2 cut(s)	248, 346
XcmI	CCANNNNNNNNNTGG	1 cut(s)	941
XmaJI	CCTAGG	1 cut(s)	208
XmnI	GAANNNNTTC	1 cut(s)	675
XspI	CTAG	2 cut(s)	209, 896

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.