Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

13980573 .. 13982671

Gene Structure 2099 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGGTTTGCAGCCTGACCCCTCTAATCAGATGGATCCGGTATTGCCGGAAGTGCAACCAGCTGAAACCACCTCGTTGCCATCATTGCTCAGTTTGTGGGCGGTGTGTACTGAAAATGGATCGACCATTGTGTATGGGTTGTTCATTGTGTTGGGGCCTTAAATTACAAGTATTTTCTTCTTTTCTTGTTTTACACATTTCTCGAGACAAGTGTTGTAACATTATCCTTGCTGCCACATTTGATATCATTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000138 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005795 GO:0005802 GO:0007275 GO:0007568 GO:0008150 GO:0010150 GO:0012505 GO:0016417 GO:0016740 GO:0016746 GO:0016747 GO:0019222 GO:0019707 GO:0031323 GO:0031410 GO:0031982 GO:0031984 GO:0031985 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0065007 GO:0090693 GO:0097708 GO:0098791 GO:0099402 GO:0140096 GO:1900055 GO:2000024 GO:2000026 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

DHHC

Protein Analysis

85

Amino Acids

9.67

Weight (kDa)

9.18

Isoelectric Point (pI)

49.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHHC	PF01529	13 - 54	1.9e-08	DHHC palmitoyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	100
AclWI	GGATC	3 cut(s)	28, 41, 126
AfaI	GTAC	1 cut(s)	108
AluBI	AGCT	1 cut(s)	61
AluI	AGCT	1 cut(s)	61
Alw26I	GTCTC	1 cut(s)	198
AlwI	GGATC	3 cut(s)	28, 41, 126
Ama87I	CYCGRG	1 cut(s)	201
AoxI	GGCC	1 cut(s)	154
ApeKI	GCWGC	2 cut(s)	9, 230
AspS9I	GGNCC	1 cut(s)	154
AvaI	CYCGRG	1 cut(s)	201
BamHI	GGATCC	1 cut(s)	33
BbvI	GCAGC	2 cut(s)	21, 217
BccI	CCATC	2 cut(s)	24, 87
BcoDI	GTCTC	1 cut(s)	198
BisI	GCNGC	2 cut(s)	10, 231
BlsI	GCNGC	2 cut(s)	11, 232
BmeT110I	CYCGRG	1 cut(s)	201
BmgT120I	GGNCC	1 cut(s)	154
BmiI	GGNNCC	2 cut(s)	35, 155
BsaWI	WCCGGW	1 cut(s)	36
Bse3DI	GCAATG	1 cut(s)	82
BseMI	GCAATG	1 cut(s)	82
BseMII	CTCAG	1 cut(s)	102
BseXI	GCAGC	2 cut(s)	21, 217
BshFI	GGCC	1 cut(s)	156
BsiHKCI	CYCGRG	1 cut(s)	201
BsiSI	CCGG	2 cut(s)	37, 46
BsmAI	GTCTC	1 cut(s)	198
BsnI	GGCC	1 cut(s)	156
BsoBI	CYCGRG	1 cut(s)	201
Bsp143I	GATC	2 cut(s)	33, 118
BspACI	CCGC	1 cut(s)	100
BspANI	GGCC	1 cut(s)	156
BspCNI	CTCAG	1 cut(s)	101
BspLI	GGNNCC	2 cut(s)	35, 155
BspPI	GGATC	3 cut(s)	28, 41, 126
BsrDI	GCAATG	1 cut(s)	82
BssMI	GATC	2 cut(s)	33, 118
BstDEI	CTNAG	1 cut(s)	88
BstKTI	GATC	2 cut(s)	36, 121
BstMAI	GTCTC	1 cut(s)	198
BstMBI	GATC	2 cut(s)	33, 118
BstMWI	GCNNNNNNNGC	2 cut(s)	51, 84
BstV1I	GCAGC	2 cut(s)	21, 217
BstX2I	RGATCY	1 cut(s)	33
BstYI	RGATCY	1 cut(s)	33
BsuRI	GGCC	1 cut(s)	156
Cfr13I	GGNCC	1 cut(s)	154
Csp6I	GTAC	1 cut(s)	107
CviJI	RGCY	3 cut(s)	12, 61, 156
CviKI_1	RGCY	3 cut(s)	12, 61, 156
CviQI	GTAC	1 cut(s)	107
DdeI	CTNAG	1 cut(s)	88
DpnI	GATC	2 cut(s)	35, 120
DpnII	GATC	2 cut(s)	33, 118
Eco32I	GATATC	1 cut(s)	244
Eco88I	CYCGRG	1 cut(s)	201
EcoO109I	RGGNCCY	1 cut(s)	154
EcoRV	GATATC	1 cut(s)	244
FaiI	YATR	1 cut(s)	134
Fnu4HI	GCNGC	2 cut(s)	10, 231
Fsp4HI	GCNGC	2 cut(s)	10, 231
GluI	GCNGC	2 cut(s)	10, 231
HaeIII	GGCC	1 cut(s)	156
HapII	CCGG	2 cut(s)	37, 46
HpaII	CCGG	2 cut(s)	37, 46
Hpy166II	GTNNAC	1 cut(s)	107
Hpy188I	TCNGA	1 cut(s)	29
Hpy188III	TCNNGA	2 cut(s)	201, 203
Hpy8I	GTNNAC	1 cut(s)	107
HpyCH4V	TGCA	2 cut(s)	9, 54
HpyF10VI	GCNNNNNNNGC	2 cut(s)	51, 84
HpyF3I	CTNAG	1 cut(s)	88
Kzo9I	GATC	2 cut(s)	33, 118
LpnPI	CCDG	4 cut(s)	26, 50, 59, 71
Lsp1109I	GCAGC	2 cut(s)	21, 217
MaeIII	GTNAC	1 cut(s)	215
MalI	GATC	2 cut(s)	35, 120
MboI	GATC	2 cut(s)	33, 118
MboII	GAAGA	1 cut(s)	168
MflI	RGATCY	1 cut(s)	33
MluCI	AATT	1 cut(s)	161
MnlI	CCTC	2 cut(s)	30, 81
MseI	TTAA	1 cut(s)	159
MspA1I	CMGCKG	1 cut(s)	61
MspI	CCGG	2 cut(s)	37, 46
MwoI	GCNNNNNNNGC	2 cut(s)	51, 84
NdeII	GATC	2 cut(s)	33, 118
NlaIV	GGNNCC	2 cut(s)	35, 155
PaeR7I	CTCGAG	1 cut(s)	201
PkrI	GCNGC	2 cut(s)	11, 232
PspN4I	GGNNCC	2 cut(s)	35, 155
PspPI	GGNCC	1 cut(s)	154
PsrI	GAACNNNNNNTAC	2 cut(s)	124, 156
PsuI	RGATCY	1 cut(s)	33
PvuII	CAGCTG	1 cut(s)	61
RsaI	GTAC	1 cut(s)	108
RsaNI	GTAC	1 cut(s)	107
SaqAI	TTAA	1 cut(s)	159
SatI	GCNGC	2 cut(s)	10, 231
Sau3AI	GATC	2 cut(s)	33, 118
Sau96I	GGNCC	1 cut(s)	154
SetI	ASST	2 cut(s)	63, 73
Sfr274I	CTCGAG	1 cut(s)	201
SlaI	CTCGAG	1 cut(s)	201
SmlI	CTYRAG	1 cut(s)	201
SmoI	CTYRAG	1 cut(s)	201
Sse9I	AATT	1 cut(s)	161
SsiI	CCGC	1 cut(s)	100
TaqI	TCGA	2 cut(s)	121, 202
TasI	AATT	1 cut(s)	161
TatI	WGTACW	1 cut(s)	106
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TseI	GCWGC	2 cut(s)	9, 230
TspDTI	ATGAA	1 cut(s)	132
XhoI	CTCGAG	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.