Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

13982864 .. 13984163

Gene Structure 1300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGCATATATCATTGGTGGCTGCAAATACCACAACCATTGAGGCATATGAAAAGAAAACCTCCTTTAAATGGCGCTATGACCTTGGTCGAAAAAAGAATTTTGAACAGGTGTTTGGGACAGATAAACGATACTGGTTCATGCCTGCTTACTCAGATGAAGATTTACGACGGATACCAGCGCTTCAGGGTCTCGAGTATCCGTATAATCCTGAGTTTGACTCCCAAGAGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000138 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005795 GO:0005802 GO:0007275 GO:0007568 GO:0008150 GO:0010150 GO:0012505 GO:0016417 GO:0016740 GO:0016746 GO:0016747 GO:0019222 GO:0019707 GO:0031323 GO:0031410 GO:0031982 GO:0031984 GO:0031985 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0065007 GO:0090693 GO:0097708 GO:0098791 GO:0099402 GO:0140096 GO:1900055 GO:2000024 GO:2000026 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

DHHC

Protein Analysis

78

Amino Acids

9.28

Weight (kDa)

5.76

Isoelectric Point (pI)

65.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	97
AcuI	CTGAAG	1 cut(s)	167
AfeI	AGCGCT	1 cut(s)	180
AfiI	CCNNNNNNNGG	1 cut(s)	69
AgsI	TTSAA	1 cut(s)	104
AjuI	GAANNNNNNNTTGG	2 cut(s)	96, 128
Alw26I	GTCTC	1 cut(s)	194
Ama87I	CYCGRG	1 cut(s)	191
Aor51HI	AGCGCT	1 cut(s)	180
ApeKI	GCWGC	1 cut(s)	20
ApoI	RAATTY	1 cut(s)	97
AspLEI	GCGC	2 cut(s)	75, 181
AvaI	CYCGRG	1 cut(s)	191
BbvI	GCAGC	1 cut(s)	7
BciVI	GTATCC	2 cut(s)	165, 207
BcoDI	GTCTC	1 cut(s)	194
BfoI	RGCGCY	2 cut(s)	76, 182
BfuI	GTATCC	2 cut(s)	165, 207
BisI	GCNGC	1 cut(s)	21
BlsI	GCNGC	1 cut(s)	22
BmeT110I	CYCGRG	1 cut(s)	191
BoxI	GACNNNNGTC	1 cut(s)	84
BplI	GAGNNNNNCTC	1 cut(s)	203
BsaI	GGTCTC	1 cut(s)	194
BsaJI	CCNNGG	1 cut(s)	82
Bsc4I	CCNNNNNNNGG	1 cut(s)	69
Bse1I	ACTGG	1 cut(s)	137
BseDI	CCNNGG	1 cut(s)	82
BseLI	CCNNNNNNNGG	1 cut(s)	69
BseMII	CTCAG	2 cut(s)	165, 201
BseNI	ACTGG	1 cut(s)	137
BseXI	GCAGC	1 cut(s)	7
BsiHKCI	CYCGRG	1 cut(s)	191
BslFI	GGGAC	1 cut(s)	130
BslI	CCNNNNNNNGG	1 cut(s)	69
BsmAI	GTCTC	1 cut(s)	194
BsmFI	GGGAC	1 cut(s)	130
Bso31I	GGTCTC	1 cut(s)	194
BsoBI	CYCGRG	1 cut(s)	191
BspCNI	CTCAG	2 cut(s)	164, 202
BspTNI	GGTCTC	1 cut(s)	194
BsrI	ACTGG	1 cut(s)	137
BssECI	CCNNGG	1 cut(s)	82
BssT1I	CCWWGG	1 cut(s)	82
BstC8I	GCNNGC	1 cut(s)	144
BstDEI	CTNAG	2 cut(s)	151, 210
BstH2I	RGCGCY	2 cut(s)	76, 182
BstHHI	GCGC	2 cut(s)	75, 181
BstMAI	GTCTC	1 cut(s)	194
BstPAI	GACNNNNGTC	1 cut(s)	84
BstV1I	GCAGC	1 cut(s)	7
BsuI	GTATCC	2 cut(s)	165, 207
Cac8I	GCNNGC	1 cut(s)	144
CfoI	GCGC	2 cut(s)	75, 181
CspCI	CAANNNNNGTGG	2 cut(s)	19, 54
CviAII	CATG	1 cut(s)	139
CviJI	RGCY	1 cut(s)	20
CviKI_1	RGCY	1 cut(s)	20
DdeI	CTNAG	2 cut(s)	151, 210
DraI	TTTAAA	1 cut(s)	67
Eco130I	CCWWGG	1 cut(s)	82
Eco31I	GGTCTC	1 cut(s)	194
Eco47III	AGCGCT	1 cut(s)	180
Eco57I	CTGAAG	1 cut(s)	167
Eco88I	CYCGRG	1 cut(s)	191
EcoT14I	CCWWGG	1 cut(s)	82
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	82
FaeI	CATG	1 cut(s)	142
FaiI	YATR	7 cut(s)	6, 8, 46, 48, 78, 140, 204
FaqI	GGGAC	1 cut(s)	130
FatI	CATG	1 cut(s)	138
FauNDI	CATATG	1 cut(s)	46
Fnu4HI	GCNGC	1 cut(s)	21
Fsp4HI	GCNGC	1 cut(s)	21
GlaI	GCGC	2 cut(s)	74, 180
GluI	GCNGC	1 cut(s)	21
HaeII	RGCGCY	2 cut(s)	76, 182
HhaI	GCGC	2 cut(s)	75, 181
Hin1II	CATG	1 cut(s)	142
Hin6I	GCGC	2 cut(s)	73, 179
HinP1I	GCGC	2 cut(s)	73, 179
HinfI	GANTC	1 cut(s)	218
Hpy188I	TCNGA	1 cut(s)	154
Hpy188III	TCNNGA	2 cut(s)	191, 209
Hpy99I	CGWCG	1 cut(s)	171
HpyCH4V	TGCA	2 cut(s)	4, 23
HpyF3I	CTNAG	2 cut(s)	151, 210
Hsp92II	CATG	1 cut(s)	142
HspAI	GCGC	2 cut(s)	73, 179
LpnPI	CCDG	6 cut(s)	92, 118, 156, 170, 189, 222
Lsp1109I	GCAGC	1 cut(s)	7
MboII	GAAGA	1 cut(s)	170
MluCI	AATT	1 cut(s)	97
MlyI	GAGTC	1 cut(s)	212
MnlI	CCTC	2 cut(s)	34, 70
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	66
NdeI	CATATG	1 cut(s)	46
NlaIII	CATG	1 cut(s)	142
NsiI	ATGCAT	1 cut(s)	6
PaeR7I	CTCGAG	1 cut(s)	191
PkrI	GCNGC	1 cut(s)	22
PleI	GAGTC	1 cut(s)	212
PpsI	GAGTC	1 cut(s)	212
PshAI	GACNNNNGTC	1 cut(s)	84
SaqAI	TTAA	1 cut(s)	66
SatI	GCNGC	1 cut(s)	21
SchI	GAGTC	1 cut(s)	212
SetI	ASST	3 cut(s)	62, 84, 111
Sfr274I	CTCGAG	1 cut(s)	191
SlaI	CTCGAG	1 cut(s)	191
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	1 cut(s)	97
StyI	CCWWGG	1 cut(s)	82
TaqI	TCGA	2 cut(s)	88, 192
TasI	AATT	1 cut(s)	97
Tru1I	TTAA	1 cut(s)	66
Tru9I	TTAA	1 cut(s)	66
TseI	GCWGC	1 cut(s)	20
TspDTI	ATGAA	3 cut(s)	63, 127, 171
TspGWI	ACGGA	2 cut(s)	184, 189
XapI	RAATTY	1 cut(s)	97
XhoI	CTCGAG	1 cut(s)	191
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.