Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

14075514 .. 14076193

Gene Structure 680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGCGATGTAAAACCATAAAAATAAAAATAAAAATTTGCTGCTTGCATGCCAAAATCCTGATTTTCCTATCCGAATCCACTCCTATTTTGGCCTGCAGCCGCGATGAGATTCATCAGTTTAATTCAAACTTTATTATATATTGTTTTCAGGTGAAGCTCTCTGGATCAGTTAGTAGCGTATACTTGACTTCTTTGCTTATGGCGTCTCCTTTGGCTCTTGGAGACATCGAAATTGACATTGTCGATAGACTCGTTTCTAGTCCTTTTGTGAAGATGACTTTGAAAGTGATGGAACACTTTGGTGTCACAGTGCAACATAAATACATCAGGCCTCCTGGAAATGCTTTTGTCGAAGGTGATGCTTCGAGTGCAAGTTACTTCCTAGCTGGTGCTGCTGTCACCAGAGGAACTGTCACAGTTGAGGGCCGTGGTGTTTTGCACACACCAATATATTTTTGTTTAATTCAGCGCATGCATAAAACAAATTTCAGATTGAACATATTTAGTAGTTTTCGGACAATTTATTTCCAAATTCGTAGTTACAAGTATCTATTAGACGATTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003866 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009423 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046417 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

EPSP_synthase

Protein Analysis

189

Amino Acids

21.27

Weight (kDa)

9.28

Isoelectric Point (pI)

33.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EPSP_synthase	PF00275	50 - 149	8.6e-22	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	180
AccII	CGCG	1 cut(s)	102
AciI	CCGC	1 cut(s)	100
AclWI	GGATC	1 cut(s)	172
AcsI	RAATTY	3 cut(s)	33, 484, 531
AcyI	GRCGYC	1 cut(s)	203
AgsI	TTSAA	3 cut(s)	126, 283, 496
AjnI	CCWGG	1 cut(s)	334
AleI	CACNNNNGTG	1 cut(s)	300
AluBI	AGCT	2 cut(s)	157, 386
AluI	AGCT	2 cut(s)	157, 386
Alw26I	GTCTC	2 cut(s)	210, 216
AlwI	GGATC	1 cut(s)	172
AoxI	GGCC	3 cut(s)	90, 329, 424
ApeKI	GCWGC	3 cut(s)	39, 96, 392
ApoI	RAATTY	3 cut(s)	33, 484, 531
AspLEI	GCGC	1 cut(s)	471
AspS9I	GGNCC	1 cut(s)	424
AsuHPI	GGTGA	3 cut(s)	163, 368, 391
BbvI	GCAGC	3 cut(s)	26, 108, 379
BccI	CCATC	1 cut(s)	283
BceAI	ACGGC	1 cut(s)	411
BcgI	CGANNNNNNTGC	2 cut(s)	341, 375
BciT130I	CCWGG	1 cut(s)	336
BcoDI	GTCTC	2 cut(s)	210, 216
BfaI	CTAG	2 cut(s)	258, 383
BfmI	CTRYAG	1 cut(s)	94
BisI	GCNGC	4 cut(s)	40, 97, 100, 393
BlsI	GCNGC	4 cut(s)	41, 98, 101, 394
Bme1390I	CCNGG	1 cut(s)	336
BmgT120I	GGNCC	1 cut(s)	424
BmrFI	CCNGG	1 cut(s)	336
BmsI	GCATC	1 cut(s)	349
BsaHI	GRCGYC	1 cut(s)	203
BsaJI	CCNNGG	1 cut(s)	427
BseBI	CCWGG	1 cut(s)	336
BseDI	CCNNGG	1 cut(s)	427
BseXI	GCAGC	3 cut(s)	26, 108, 379
Bsh1236I	CGCG	1 cut(s)	102
BshFI	GGCC	3 cut(s)	92, 331, 426
BsmAI	GTCTC	2 cut(s)	210, 216
BsmBI	CGTCTC	1 cut(s)	210
BsnI	GGCC	3 cut(s)	92, 331, 426
Bsp143I	GATC	1 cut(s)	164
BspACI	CCGC	1 cut(s)	100
BspANI	GGCC	3 cut(s)	92, 331, 426
BspFNI	CGCG	1 cut(s)	102
BspMAI	CTGCAG	1 cut(s)	98
BspPI	GGATC	1 cut(s)	172
BssECI	CCNNGG	1 cut(s)	427
BssMI	GATC	1 cut(s)	164
BssNAI	GTATAC	1 cut(s)	181
BssNI	GRCGYC	1 cut(s)	203
Bst1107I	GTATAC	1 cut(s)	181
Bst2UI	CCWGG	1 cut(s)	336
Bst4CI	ACNGT	3 cut(s)	310, 412, 418
BstACI	GRCGYC	1 cut(s)	203
BstC8I	GCNNGC	4 cut(s)	44, 48, 94, 473
BstDSI	CCRYGG	1 cut(s)	427
BstFNI	CGCG	1 cut(s)	102
BstHHI	GCGC	1 cut(s)	471
BstKTI	GATC	1 cut(s)	167
BstMAI	GTCTC	2 cut(s)	210, 216
BstMBI	GATC	1 cut(s)	164
BstMWI	GCNNNNNNNGC	2 cut(s)	368, 392
BstNI	CCWGG	1 cut(s)	336
BstNSI	RCATGY	2 cut(s)	50, 475
BstSCI	CCNGG	1 cut(s)	334
BstSFI	CTRYAG	1 cut(s)	94
BstUI	CGCG	1 cut(s)	102
BstV1I	GCAGC	3 cut(s)	26, 108, 379
BstZ17I	GTATAC	1 cut(s)	181
BsuRI	GGCC	3 cut(s)	92, 331, 426
BtgI	CCRYGG	1 cut(s)	427
BtgZI	GCGATG	2 cut(s)	19, 117
BtsIMutI	CAGTG	1 cut(s)	315
Cac8I	GCNNGC	4 cut(s)	44, 48, 94, 473
CfoI	GCGC	1 cut(s)	471
Cfr13I	GGNCC	1 cut(s)	424
CseI	GACGC	1 cut(s)	192
CviAII	CATG	2 cut(s)	47, 472
CviJI	RGCY	7 cut(s)	92, 99, 157, 215, 331, 386, 426
CviKI_1	RGCY	7 cut(s)	92, 99, 157, 215, 331, 386, 426
DpnI	GATC	1 cut(s)	166
DpnII	GATC	1 cut(s)	164
Eco147I	AGGCCT	1 cut(s)	331
EcoRII	CCWGG	1 cut(s)	334
EcoT22I	ATGCAT	1 cut(s)	477
Esp3I	CGTCTC	1 cut(s)	210
FaeI	CATG	2 cut(s)	50, 475
FatI	CATG	2 cut(s)	46, 471
FblI	GTMKAC	1 cut(s)	180
Fnu4HI	GCNGC	4 cut(s)	40, 97, 100, 393
Fsp4HI	GCNGC	4 cut(s)	40, 97, 100, 393
FspBI	CTAG	2 cut(s)	258, 383
GlaI	GCGC	1 cut(s)	470
GluI	GCNGC	4 cut(s)	40, 97, 100, 393
HaeIII	GGCC	3 cut(s)	92, 331, 426
HgaI	GACGC	1 cut(s)	192
HhaI	GCGC	1 cut(s)	471
Hin1I	GRCGYC	1 cut(s)	203
Hin1II	CATG	2 cut(s)	50, 475
Hin6I	GCGC	1 cut(s)	469
HinP1I	GCGC	1 cut(s)	469
HinfI	GANTC	3 cut(s)	74, 109, 249
HphI	GGTGA	3 cut(s)	163, 368, 391
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	3 cut(s)	73, 491, 516
Hpy188III	TCNNGA	2 cut(s)	58, 162
Hpy8I	GTNNAC	1 cut(s)	181
HpyAV	CCTTC	1 cut(s)	347
HpyCH4III	ACNGT	3 cut(s)	310, 412, 418
HpyCH4V	TGCA	6 cut(s)	46, 96, 313, 371, 439, 475
HpyF10VI	GCNNNNNNNGC	2 cut(s)	368, 392
Hsp92I	GRCGYC	1 cut(s)	203
Hsp92II	CATG	2 cut(s)	50, 475
HspAI	GCGC	1 cut(s)	469
Kzo9I	GATC	1 cut(s)	164
LpnPI	CCDG	9 cut(s)	71, 106, 134, 147, 313, 321, 348, 372, 415
Lsp1109I	GCAGC	3 cut(s)	26, 108, 379
LweI	GCATC	1 cut(s)	349
MaeI	CTAG	2 cut(s)	258, 383
MaeIII	GTNAC	5 cut(s)	304, 374, 397, 412, 539
MalI	GATC	1 cut(s)	166
MboI	GATC	1 cut(s)	164
MboII	GAAGA	1 cut(s)	283
MluCI	AATT	7 cut(s)	33, 121, 231, 462, 484, 519, 531
MlyI	GAGTC	1 cut(s)	243
MnlI	CCTC	3 cut(s)	342, 398, 415
Mph1103I	ATGCAT	1 cut(s)	477
MseI	TTAA	2 cut(s)	120, 461
MslI	CAYNNNNRTG	1 cut(s)	300
MspR9I	CCNGG	1 cut(s)	336
MvaI	CCWGG	1 cut(s)	336
MvnI	CGCG	1 cut(s)	102
MwoI	GCNNNNNNNGC	2 cut(s)	368, 392
NdeII	GATC	1 cut(s)	164
NlaIII	CATG	2 cut(s)	50, 475
NmuCI	GTSAC	3 cut(s)	304, 397, 412
NsiI	ATGCAT	1 cut(s)	477
NspI	RCATGY	2 cut(s)	50, 475
OliI	CACNNNNGTG	1 cut(s)	300
PaeI	GCATGC	2 cut(s)	50, 475
PceI	AGGCCT	1 cut(s)	331
PcsI	WCGNNNNNNNCGW	1 cut(s)	249
PfeI	GAWTC	2 cut(s)	74, 109
PflFI	GACNNNGTC	1 cut(s)	239
PfoI	TCCNGGA	1 cut(s)	334
PkrI	GCNGC	4 cut(s)	41, 98, 101, 394
PleI	GAGTC	1 cut(s)	243
PpsI	GAGTC	1 cut(s)	243
Psp6I	CCWGG	1 cut(s)	334
PspGI	CCWGG	1 cut(s)	334
PspPI	GGNCC	1 cut(s)	424
PstI	CTGCAG	1 cut(s)	98
PsyI	GACNNNGTC	1 cut(s)	239
RseI	CAYNNNNRTG	1 cut(s)	300
SaqAI	TTAA	2 cut(s)	120, 461
SatI	GCNGC	4 cut(s)	40, 97, 100, 393
Sau3AI	GATC	1 cut(s)	164
Sau96I	GGNCC	1 cut(s)	424
SchI	GAGTC	1 cut(s)	243
ScrFI	CCNGG	1 cut(s)	336
SetI	ASST	4 cut(s)	153, 159, 358, 388
SfaNI	GCATC	1 cut(s)	349
SfcI	CTRYAG	1 cut(s)	94
SmiMI	CAYNNNNRTG	1 cut(s)	300
SphI	GCATGC	2 cut(s)	50, 475
Sse9I	AATT	7 cut(s)	33, 121, 231, 462, 484, 519, 531
SseBI	AGGCCT	1 cut(s)	331
SsiI	CCGC	1 cut(s)	100
SspMI	CTAG	2 cut(s)	258, 383
StuI	AGGCCT	1 cut(s)	331
StyD4I	CCNGG	1 cut(s)	334
TaaI	ACNGT	3 cut(s)	310, 412, 418
TaqI	TCGA	4 cut(s)	228, 243, 351, 365
TasI	AATT	7 cut(s)	33, 121, 231, 462, 484, 519, 531
TauI	GCSGC	1 cut(s)	102
TfiI	GAWTC	2 cut(s)	74, 109
Tru1I	TTAA	2 cut(s)	120, 461
Tru9I	TTAA	2 cut(s)	120, 461
TscAI	CASTG	1 cut(s)	315
TseFI	GTSAC	3 cut(s)	304, 397, 412
TseI	GCWGC	3 cut(s)	39, 96, 392
Tsp45I	GTSAC	3 cut(s)	304, 397, 412
TspDTI	ATGAA	1 cut(s)	101
TspRI	CASTG	1 cut(s)	315
Tth111I	GACNNNGTC	1 cut(s)	239
XapI	RAATTY	3 cut(s)	33, 484, 531
XceI	RCATGY	2 cut(s)	50, 475
XcmI	CCANNNNNNNNNTGG	1 cut(s)	85
XmiI	GTMKAC	1 cut(s)	180
XspI	CTAG	2 cut(s)	258, 383
Zsp2I	ATGCAT	1 cut(s)	477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.