pycom02g17140

structural constituent of cuticle

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
N/A
Physical Location & Seq
Reverse (-)
14697349 .. 14698302
954 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 954 bp
ATGATCAATCAGTCACTTCCTAAGGAGTCTCAGTATCTAGTTCAAAAAATGGCTTCTTCTAAGGCAGTTGCAACCATTGCTCTTCTGCTCTCCCTTAACCTCTTGTTTTTCACTACAGTCAGCGCAACTCGTTGCCCTTCCCCTCCCGAAAGCTCTCCACCCACAAGTTTCCCTCCTGCAAGTTCTCCTCCTGCAAGCTTTCCTCCCGAAGGCTCTCCTCCCGCAAGCTTTACTCCCACCAGCTCTCCTCCCGCCAGCTCTCCTCCCGGAAGCTCTCCTCCCGCAATCTCTCCTCCCGCAAGTTGTCCTCCCGCAAGCTCTCCTCCTGCAAGTTGTCCTCCCGCAAGCTCTCCTCCTTCAAGCTCTCCTCCCGCAATCTCTCCTCCCGCAAGCTCTCCTCCCGCAAGTTCTCCTCCCGCAAGCTCTCCTCCTGCAAGTTGTCCTCCCGCAAGCTCTCCTCCTTCAAGTTCTTCTCCCGCAAGCTCTCCTCCTGCAAGTTTTCCTCCCGCAAGCTCTCCTCCTTCAAGTTCTTCTCCCGCAAGCTCTCCTCCCGGAAGCTCTCCTCCCGCAATCTCTCCTCCCGCAAGCTCTCCTACCGCAAGCTCTCCTCCCGCAAGCTCTACTCCTGCAAGCTCTCCTCCCGCAAGCTCTCCATCTGAAGCCTCTTACCCTCCCGCAAGCCCTCCAGCTGAAGCCTCTTGCCCTAAGGACGTCCTTAAGCTAGGGGTATGTGGCAACTTGTTAAATGACTTGGTGAACATTGTTGTGGGGACCCCACCAAAGACCCCATGCTGTAGCCTCGTTGGTGGACTTGCCGATCGTGAAGCTGCTGTGTGCCTTTGCACTGCCATTAAGGCCAACGTTTTGGGCATCAATCTTGATGTGCCAGTCTCCTTAGGCTTGCTTTTGAATTACTGCGGCAAGTCTGTCCCGAAAGGCTTCCAATGCACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

318

Amino Acids

30.72

Weight (kDa)

7.37

Isoelectric Point (pI)

122.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Extensin_1 PF02095 47 - 174 3.1e-10 Extensin-like protein
Extensin_1 PF02095 88 - 232 1.8e-09 Extensin-like protein
LTP_2 PF14368 225 - 316 1.9e-06 Probable lipid transfer
Hydrophob_seed PF14547 234 - 316 7.4e-24 Hydrophobic seed protein
Tryp_alpha_amyl PF00234 234 - 316 5.2e-15 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 714
AclI AACGTT 1 cut(s) 861
AcuI CTGAAG 2 cut(s) 678, 711
AcyI GRCGYC 1 cut(s) 711
AfiI CCNNNNNNNGG 1 cut(s) 209
AflII CTTAAG 1 cut(s) 716
AgsI TTSAA 5 cut(s) 44, 360, 465, 525, 910
Alw26I GTCTC 2 cut(s) 33, 895
AoxI GGCC 1 cut(s) 855
ApeKI GCWGC 1 cut(s) 827
Asp700I GAANNNNTTC 1 cut(s) 938
AspLEI GCGC 1 cut(s) 125
AspS9I GGNCC 1 cut(s) 771
AsuC2I CCSGG 2 cut(s) 267, 552
AsuHPI GGTGA 1 cut(s) 766
AvaII GGWCC 1 cut(s) 771
AxyI CCTNAGG 3 cut(s) 21, 705, 895
BbvI GCAGC 1 cut(s) 814
BccI CCATC 1 cut(s) 661
BclI TGATCA 1 cut(s) 3
BcnI CCSGG 2 cut(s) 267, 552
BcoDI GTCTC 2 cut(s) 33, 895
BfaI CTAG 2 cut(s) 38, 722
BfmI CTRYAG 2 cut(s) 114, 793
BfrI CTTAAG 1 cut(s) 716
BglI GCCNNNNNGGC 1 cut(s) 854
BisI GCNGC 2 cut(s) 828, 919
BlsI GCNGC 2 cut(s) 829, 920
Bme1390I CCNGG 2 cut(s) 267, 552
Bme18I GGWCC 1 cut(s) 771
BmgT120I GGNCC 1 cut(s) 771
BmiI GGNNCC 2 cut(s) 772, 773
BmrFI CCNGG 2 cut(s) 267, 552
BmsI GCATC 1 cut(s) 879
BpmI CTGGAG 1 cut(s) 669
BpuMI CCSGG 2 cut(s) 267, 552
BsaHI GRCGYC 1 cut(s) 711
BsaXI ACNNNNNCTCC 4 cut(s) 17, 47, 229, 259
Bsc4I CCNNNNNNNGG 1 cut(s) 209
Bse1I ACTGG 1 cut(s) 887
Bse21I CCTNAGG 3 cut(s) 21, 705, 895
Bse3DI GCAATG 1 cut(s) 75
BseLI CCNNNNNNNGG 1 cut(s) 209
BseMI GCAATG 1 cut(s) 75
BseMII CTCAG 1 cut(s) 44
BseNI ACTGG 1 cut(s) 887
BseXI GCAGC 1 cut(s) 814
Bsh1285I CGRYCG 1 cut(s) 820
BshFI GGCC 1 cut(s) 857
BsiEI CGRYCG 1 cut(s) 820
BsiSI CCGG 2 cut(s) 267, 552
BslFI GGGAC 2 cut(s) 784, 914
BslI CCNNNNNNNGG 1 cut(s) 209
BsmAI GTCTC 2 cut(s) 33, 895
BsmFI GGGAC 2 cut(s) 784, 914
BsnI GGCC 1 cut(s) 857
Bsp143I GATC 2 cut(s) 3, 817
BspANI GGCC 1 cut(s) 857
BspCNI CTCAG 1 cut(s) 43
BspLI GGNNCC 2 cut(s) 772, 773
BspQI GCTCTTC 1 cut(s) 87
BspTI CTTAAG 1 cut(s) 716
BsrDI GCAATG 1 cut(s) 75
BsrI ACTGG 1 cut(s) 887
BssMI GATC 2 cut(s) 3, 817
BssNI GRCGYC 1 cut(s) 711
Bst4CI ACNGT 1 cut(s) 118
Bst6I CTCTTC 1 cut(s) 87
BstACI GRCGYC 1 cut(s) 711
BstAFI CTTAAG 1 cut(s) 716
BstAPI GCANNNNNTGC 1 cut(s) 77
BstDEI CTNAG 5 cut(s) 21, 30, 60, 705, 895
BstENI CCTNNNNNAGG 1 cut(s) 207
BstHHI GCGC 1 cut(s) 125
BstKTI GATC 2 cut(s) 6, 820
BstMAI GTCTC 2 cut(s) 33, 895
BstMBI GATC 2 cut(s) 3, 817
BstMCI CGRYCG 1 cut(s) 820
BstMWI GCNNNNNNNGC 3 cut(s) 77, 854, 945
BstSCI CCNGG 2 cut(s) 265, 550
BstSFI CTRYAG 2 cut(s) 114, 793
BstV1I GCAGC 1 cut(s) 814
BstXI CCANNNNNNTGG 1 cut(s) 865
Bsu36I CCTNAGG 3 cut(s) 21, 705, 895
BsuRI GGCC 1 cut(s) 857
BtsI GCAGTG 1 cut(s) 843
BtsIMutI CAGTG 1 cut(s) 843
CfoI GCGC 1 cut(s) 125
Cfr13I GGNCC 1 cut(s) 771
CviAII CATG 1 cut(s) 789
DdeI CTNAG 5 cut(s) 21, 30, 60, 705, 895
DpnI GATC 2 cut(s) 5, 819
DpnII GATC 2 cut(s) 3, 817
Eam1104I CTCTTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 87
Eco47I GGWCC 1 cut(s) 771
Eco57I CTGAAG 2 cut(s) 678, 711
Eco81I CCTNAGG 3 cut(s) 21, 705, 895
EcoNI CCTNNNNNAGG 1 cut(s) 207
EcoO109I RGGNCCY 1 cut(s) 771
FaeI CATG 1 cut(s) 792
FaiI YATR 2 cut(s) 730, 790
FaqI GGGAC 2 cut(s) 784, 914
FatI CATG 1 cut(s) 788
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 2 cut(s) 828, 919
Fsp4HI GCNGC 2 cut(s) 828, 919
FspBI CTAG 2 cut(s) 38, 722
GlaI GCGC 1 cut(s) 124
GluI GCNGC 2 cut(s) 828, 919
GsuI CTGGAG 1 cut(s) 669
HaeIII GGCC 1 cut(s) 857
HapII CCGG 2 cut(s) 267, 552
HhaI GCGC 1 cut(s) 125
Hin1I GRCGYC 1 cut(s) 711
Hin1II CATG 1 cut(s) 792
Hin6I GCGC 1 cut(s) 123
HinP1I GCGC 1 cut(s) 123
HindIII AAGCTT 2 cut(s) 196, 226
HinfI GANTC 1 cut(s) 26
HpaII CCGG 2 cut(s) 267, 552
HphI GGTGA 1 cut(s) 766
Hpy166II GTNNAC 2 cut(s) 757, 809
Hpy188I TCNGA 1 cut(s) 658
Hpy188III TCNNGA 5 cut(s) 146, 206, 821, 878, 931
Hpy8I GTNNAC 2 cut(s) 757, 809
HpyAV CCTTC 5 cut(s) 147, 203, 366, 471, 531
HpyCH4III ACNGT 1 cut(s) 118
HpyCH4IV ACGT 2 cut(s) 711, 861
HpyCH4V TGCA 9 cut(s) 71, 179, 194, 329, 434, 494, 629, 843, 948
HpyF10VI GCNNNNNNNGC 3 cut(s) 77, 854, 945
HpyF3I CTNAG 5 cut(s) 21, 30, 60, 705, 895
HpySE526I ACGT 2 cut(s) 711, 861
Hsp92I GRCGYC 1 cut(s) 711
Hsp92II CATG 1 cut(s) 792
HspAI GCGC 1 cut(s) 123
KflI GGGWCCC 1 cut(s) 771
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 2 cut(s) 3, 817
LguI GCTCTTC 1 cut(s) 87
Lsp1109I GCAGC 1 cut(s) 814
LweI GCATC 1 cut(s) 879
MaeI CTAG 2 cut(s) 38, 722
MaeII ACGT 2 cut(s) 711, 861
MaeIII GTNAC 1 cut(s) 12
MalI GATC 2 cut(s) 5, 819
MboI GATC 2 cut(s) 3, 817
MboII GAAGA 4 cut(s) 48, 74, 462, 522
MluCI AATT 1 cut(s) 910
MlyI GAGTC 1 cut(s) 35
MroXI GAANNNNTTC 1 cut(s) 938
MseI TTAA 4 cut(s) 96, 717, 743, 852
MslI CAYNNNNRTG 1 cut(s) 764
MspA1I CMGCKG 1 cut(s) 689
MspCI CTTAAG 1 cut(s) 716
MspI CCGG 2 cut(s) 267, 552
MspR9I CCNGG 2 cut(s) 267, 552
MwoI GCNNNNNNNGC 3 cut(s) 77, 854, 945
NciI CCSGG 2 cut(s) 267, 552
NdeII GATC 2 cut(s) 3, 817
NlaIII CATG 1 cut(s) 792
NlaIV GGNNCC 2 cut(s) 772, 773
NmuCI GTSAC 1 cut(s) 12
PciSI GCTCTTC 1 cut(s) 87
PdmI GAANNNNTTC 1 cut(s) 938
PfoI TCCNGGA 2 cut(s) 265, 550
PkrI GCNGC 2 cut(s) 829, 920
Ple19I CGATCG 1 cut(s) 820
PleI GAGTC 1 cut(s) 34
PpsI GAGTC 1 cut(s) 34
PpuMI RGGWCCY 1 cut(s) 771
Psp1406I AACGTT 1 cut(s) 861
Psp5II RGGWCCY 1 cut(s) 771
PspN4I GGNNCC 2 cut(s) 772, 773
PspPI GGNCC 1 cut(s) 771
PspPPI RGGWCCY 1 cut(s) 771
PvuI CGATCG 1 cut(s) 820
PvuII CAGCTG 1 cut(s) 689
RseI CAYNNNNRTG 1 cut(s) 764
SapI GCTCTTC 1 cut(s) 87
SaqAI TTAA 4 cut(s) 96, 717, 743, 852
SatI GCNGC 2 cut(s) 828, 919
Sau3AI GATC 2 cut(s) 3, 817
Sau96I GGNCC 1 cut(s) 771
SchI GAGTC 1 cut(s) 35
ScrFI CCNGG 2 cut(s) 267, 552
SfaNI GCATC 1 cut(s) 879
SfcI CTRYAG 2 cut(s) 114, 793
SinI GGWCC 1 cut(s) 771
SmiMI CAYNNNNRTG 1 cut(s) 764
SmlI CTYRAG 1 cut(s) 716
SmoI CTYRAG 1 cut(s) 716
Sse9I AATT 1 cut(s) 910
SspMI CTAG 2 cut(s) 38, 722
StyD4I CCNGG 2 cut(s) 265, 550
TaaI ACNGT 1 cut(s) 118
TaiI ACGT 2 cut(s) 714, 864
TasI AATT 1 cut(s) 910
TauI GCSGC 1 cut(s) 921
Tru1I TTAA 4 cut(s) 96, 717, 743, 852
Tru9I TTAA 4 cut(s) 96, 717, 743, 852
TscAI CASTG 1 cut(s) 850
TseFI GTSAC 1 cut(s) 12
TseI GCWGC 1 cut(s) 827
Tsp45I GTSAC 1 cut(s) 12
TspRI CASTG 1 cut(s) 850
Vha464I CTTAAG 1 cut(s) 716
VpaK11BI GGWCC 1 cut(s) 771
XagI CCTNNNNNAGG 1 cut(s) 207
XmnI GAANNNNTTC 1 cut(s) 938
XspI CTAG 2 cut(s) 38, 722
ZraI GACGTC 1 cut(s) 712
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.