pycom02g17680

alpha-amylase 3

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
N/A
Physical Location & Seq
Forward (+)
15868343 .. 15868612
270 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 270 bp
ATGAGTGATTGTCACAGGGACGATATTGGGTATGACGGATGGAGGCTTGATTTCGTTAGAGGATTTTGGGGTGGCTACGTCAAGGACTACATGGATGCCAGTGAGCCCTACTTTGCCGTAGGCGAGTATTGGGATTCCCTAAGTTATACATACGGGGAAATGGATCACAATCAAGATGCACACAGGCAGAGAATTGTTGATTGGATCAACGCTACTAATGGAACATGCTGCCACTATGCTCCAAATTTCAACTTGCTGCCACATATTTAA

Protein Analysis

90

Amino Acids

10.49

Weight (kDa)

4.68

Isoelectric Point (pI)

41.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 171, 212
AcsI RAATTY 1 cut(s) 244
AgsI TTSAA 1 cut(s) 250
AjuI GAANNNNNNNTTGG 2 cut(s) 184, 216
AlwI GGATC 2 cut(s) 171, 212
ApeKI GCWGC 2 cut(s) 228, 256
ApoI RAATTY 1 cut(s) 244
BanII GRGCYC 1 cut(s) 108
BbvI GCAGC 2 cut(s) 215, 243
BccI CCATC 1 cut(s) 33
BceAI ACGGC 1 cut(s) 101
BisI GCNGC 2 cut(s) 229, 257
BlsI GCNGC 2 cut(s) 230, 258
BmsI GCATC 2 cut(s) 85, 166
BsaBI GATNNNNATC 1 cut(s) 168
Bse1I ACTGG 1 cut(s) 99
Bse8I GATNNNNATC 1 cut(s) 168
BseGI GGATG 2 cut(s) 44, 100
BseJI GATNNNNATC 1 cut(s) 168
BseNI ACTGG 1 cut(s) 99
BseXI GCAGC 2 cut(s) 215, 243
BslFI GGGAC 1 cut(s) 32
BsmFI GGGAC 1 cut(s) 32
Bsp1286I GDGCHC 1 cut(s) 108
Bsp143I GATC 2 cut(s) 163, 204
BspPI GGATC 2 cut(s) 171, 212
BsrI ACTGG 1 cut(s) 99
BssMI GATC 2 cut(s) 163, 204
BstDEI CTNAG 1 cut(s) 140
BstF5I GGATG 2 cut(s) 44, 100
BstKTI GATC 2 cut(s) 166, 207
BstMBI GATC 2 cut(s) 163, 204
BstNSI RCATGY 1 cut(s) 228
BstV1I GCAGC 2 cut(s) 215, 243
BtsCI GGATG 2 cut(s) 44, 100
BtsIMutI CAGTG 1 cut(s) 106
CviAII CATG 2 cut(s) 91, 225
CviJI RGCY 3 cut(s) 46, 75, 106
CviKI_1 RGCY 3 cut(s) 46, 75, 106
DdeI CTNAG 1 cut(s) 140
DpnI GATC 2 cut(s) 165, 206
DpnII GATC 2 cut(s) 163, 204
Eco24I GRGCYC 1 cut(s) 108
EcoT38I GRGCYC 1 cut(s) 108
FaeI CATG 2 cut(s) 94, 228
FaiI YATR 7 cut(s) 33, 92, 147, 151, 226, 237, 264
FaqI GGGAC 1 cut(s) 32
FatI CATG 2 cut(s) 90, 224
Fnu4HI GCNGC 2 cut(s) 229, 257
FokI GGATG 2 cut(s) 51, 107
FriOI GRGCYC 1 cut(s) 108
Fsp4HI GCNGC 2 cut(s) 229, 257
GluI GCNGC 2 cut(s) 229, 257
Hin1II CATG 2 cut(s) 94, 228
HinfI GANTC 1 cut(s) 134
Hpy188III TCNNGA 1 cut(s) 173
HpyCH4IV ACGT 1 cut(s) 78
HpyCH4V TGCA 1 cut(s) 179
HpyF3I CTNAG 1 cut(s) 140
HpySE526I ACGT 1 cut(s) 78
Hsp92II CATG 2 cut(s) 94, 228
Kzo9I GATC 2 cut(s) 163, 204
LmnI GCTCC 1 cut(s) 244
LpnPI CCDG 2 cut(s) 112, 169
Lsp1109I GCAGC 2 cut(s) 215, 243
LweI GCATC 2 cut(s) 85, 166
MaeII ACGT 1 cut(s) 78
MaeIII GTNAC 1 cut(s) 11
MalI GATC 2 cut(s) 165, 206
MboI GATC 2 cut(s) 163, 204
MhlI GDGCHC 1 cut(s) 108
MluCI AATT 2 cut(s) 192, 244
MnlI CCTC 2 cut(s) 36, 53
MseI TTAA 1 cut(s) 268
NdeII GATC 2 cut(s) 163, 204
NlaIII CATG 2 cut(s) 94, 228
NmuCI GTSAC 1 cut(s) 11
NspI RCATGY 1 cut(s) 228
PfeI GAWTC 1 cut(s) 134
PkrI GCNGC 2 cut(s) 230, 258
SaqAI TTAA 1 cut(s) 268
SatI GCNGC 2 cut(s) 229, 257
Sau3AI GATC 2 cut(s) 163, 204
SduI GDGCHC 1 cut(s) 108
SetI ASST 1 cut(s) 81
SfaNI GCATC 2 cut(s) 85, 166
Sse9I AATT 2 cut(s) 192, 244
TaiI ACGT 1 cut(s) 81
TasI AATT 2 cut(s) 192, 244
TfiI GAWTC 1 cut(s) 134
Tru1I TTAA 1 cut(s) 268
Tru9I TTAA 1 cut(s) 268
TscAI CASTG 1 cut(s) 106
TseFI GTSAC 1 cut(s) 11
TseI GCWGC 2 cut(s) 228, 256
Tsp45I GTSAC 1 cut(s) 11
TspGWI ACGGA 1 cut(s) 51
TspRI CASTG 1 cut(s) 106
XapI RAATTY 1 cut(s) 244
XceI RCATGY 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.