pycom02g18380

Zinc finger MYM-type protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
N/A
Physical Location & Seq
Reverse (-)
16595306 .. 16596259
954 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 954 bp
ATGGACGAGAACCAAATTTCAGGTCACATTCCCCCTGGTCTGGGAAAGCTGCACAAGTTATATCAATTAACTTTTGATGGGAACTCTCTCTCTGGCAATCTTCCATCCTTTTTCAGAAATTTAAGTCAATTAAATGTGTTAAGCTTAGCAGGCAACAAACTTCAAGGCAATATCCCGCCGAGTTTAGCAGAGTGTCAGAATTTGAGGATCTTACATCTTGGTGCCAACAATTTCAGCGGTATCATATCGCAAGAAATCTTTGGTCTGCTGAACTTGTATGATTTGAGTTTCGGACAAAATCAGTTTATAGGCTCCCTGCCAGAGAACATAGGAATTTTAATAAATCTAGAGTATTTAGATATCTCTGATAACATGTTATTCGGTAAAATTCCGGCTAGTCTTGTTAGTTGTATAAAATTAGAGTACCTAGACATGCATGGAAATTTCTTCAATGGGACAATTCCATCAACTTTGAGTTCACTAAGAGGTCTTTCAAAATTGTATCTTTCTCACAACAACTTGTCAGGCACCATTCCAGAATTCTTAGAAGGTTTTGTATTTTTGGAATCTCTGAATCTATCTTATAACAATTTTGAGGGCATGTTATCGATCAAAGGAGTGTTCAAGAATGCAACGGCAACATCAGTTGAAGGAAATAGTAAGCTTTGTGGGGGCATACCTGTTTCATTTGCCAAAGTGCAAATTCCCGCATGCAAAAAAGGAAGGATTGAGCTTAACCATGAAATTGGTTCTCTCCCTCGTTTGTGGGATTCTTGGAGTCATTTTTGCACTAACCTTTTTGTACCTTTATTCCTCACGGAGGGACAAAAAGGGTCAAGCTGCAAGGGATTCGAACAAATTTCCCCAGGTGTCTTACCAAAGTCTTCTAAAGGAAACAAATGGATTCTCATCAACCAACTTGGTCGGTATGGGCAGTTTTGGGTCCGTTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

318

Amino Acids

34.9

Weight (kDa)

8.17

Isoelectric Point (pI)

36.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 19 - 78 9.2e-06 Leucine rich repeat
LRR_14 PF23598 55 - 175 4.1e-10 Leucine-rich repeat region
LRR_8 PF13855 139 - 198 3.3e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 585, 952
AccB1I GGYRCC 2 cut(s) 221, 527
AciI CCGC 3 cut(s) 176, 237, 708
AclWI GGATC 1 cut(s) 215
AcsI RAATTY 9 cut(s) 15, 118, 199, 333, 387, 442, 539, 702, 858
AfaI GTAC 2 cut(s) 425, 804
AfiI CCNNNNNNNGG 3 cut(s) 40, 41, 820
AflIII ACRYGT 1 cut(s) 372
AgsI TTSAA 5 cut(s) 164, 451, 495, 625, 650
AjnI CCWGG 2 cut(s) 34, 865
AluBI AGCT 5 cut(s) 49, 144, 664, 733, 840
AluI AGCT 5 cut(s) 49, 144, 664, 733, 840
AlwI GGATC 1 cut(s) 215
ApeKI GCWGC 2 cut(s) 49, 840
ApoI RAATTY 9 cut(s) 15, 118, 199, 333, 387, 442, 539, 702, 858
ArsI GACNNNNNNTTYG 2 cut(s) 7, 39
AspS9I GGNCC 1 cut(s) 943
AsuII TTCGAA 1 cut(s) 852
AvaII GGWCC 1 cut(s) 943
BanI GGYRCC 2 cut(s) 221, 527
BbsI GAAGAC 1 cut(s) 876
BbvI GCAGC 2 cut(s) 36, 827
BccI CCATC 3 cut(s) 71, 112, 472
BceAI ACGGC 1 cut(s) 651
BcgI CGANNNNNNTGC 2 cut(s) 832, 866
BciT130I CCWGG 2 cut(s) 36, 867
BfaI CTAG 3 cut(s) 347, 396, 428
BisI GCNGC 2 cut(s) 50, 841
BlpI GCTNAGC 1 cut(s) 145
BlsI GCNGC 2 cut(s) 51, 842
Bme1390I CCNGG 2 cut(s) 36, 867
Bme18I GGWCC 1 cut(s) 943
BmgT120I GGNCC 1 cut(s) 943
BmiI GGNNCC 4 cut(s) 223, 313, 529, 944
BmrFI CCNGG 2 cut(s) 36, 867
BpiI GAAGAC 1 cut(s) 876
Bpu1102I GCTNAGC 1 cut(s) 145
Bpu14I TTCGAA 1 cut(s) 852
Bsa29I ATCGAT 1 cut(s) 608
BsaBI GATNNNNATC 1 cut(s) 908
BsaJI CCNNGG 2 cut(s) 34, 865
Bsc4I CCNNNNNNNGG 3 cut(s) 40, 41, 820
Bse8I GATNNNNATC 1 cut(s) 908
BseBI CCWGG 2 cut(s) 36, 867
BseCI ATCGAT 1 cut(s) 608
BseDI CCNNGG 2 cut(s) 34, 865
BseGI GGATG 1 cut(s) 104
BseJI GATNNNNATC 1 cut(s) 908
BseLI CCNNNNNNNGG 3 cut(s) 40, 41, 820
BseXI GCAGC 2 cut(s) 36, 827
BsgI GTGCAG 1 cut(s) 35
BshNI GGYRCC 2 cut(s) 221, 527
BshVI ATCGAT 1 cut(s) 608
BsiSI CCGG 1 cut(s) 392
BslFI GGGAC 2 cut(s) 469, 837
BslI CCNNNNNNNGG 3 cut(s) 40, 41, 820
BsmFI GGGAC 2 cut(s) 469, 837
BsmI GAATGC 1 cut(s) 634
Bsp119I TTCGAA 1 cut(s) 852
Bsp143I GATC 2 cut(s) 207, 609
Bsp1720I GCTNAGC 1 cut(s) 145
BspACI CCGC 3 cut(s) 176, 237, 708
BspDI ATCGAT 1 cut(s) 608
BspLI GGNNCC 4 cut(s) 223, 313, 529, 944
BspPI GGATC 1 cut(s) 215
BspT104I TTCGAA 1 cut(s) 852
BspT107I GGYRCC 2 cut(s) 221, 527
BssECI CCNNGG 2 cut(s) 34, 865
BssMI GATC 2 cut(s) 207, 609
Bst2UI CCWGG 2 cut(s) 36, 867
BstBI TTCGAA 1 cut(s) 852
BstC8I GCNNGC 2 cut(s) 151, 712
BstDEI CTNAG 3 cut(s) 145, 482, 544
BstENI CCTNNNNNAGG 1 cut(s) 818
BstF5I GGATG 1 cut(s) 104
BstKTI GATC 2 cut(s) 210, 612
BstMBI GATC 2 cut(s) 207, 609
BstMWI GCNNNNNNNGC 1 cut(s) 150
BstNI CCWGG 2 cut(s) 36, 867
BstNSI RCATGY 4 cut(s) 376, 436, 604, 714
BstSCI CCNGG 2 cut(s) 34, 865
BstV1I GCAGC 2 cut(s) 36, 827
BstV2I GAAGAC 1 cut(s) 876
BstX2I RGATCY 1 cut(s) 207
BstXI CCANNNNNNTGG 1 cut(s) 746
BstYI RGATCY 1 cut(s) 207
Bsu15I ATCGAT 1 cut(s) 608
BsuTUI ATCGAT 1 cut(s) 608
BtsCI GGATG 1 cut(s) 104
Cac8I GCNNGC 2 cut(s) 151, 712
Cfr13I GGNCC 1 cut(s) 943
ClaI ATCGAT 1 cut(s) 608
Csp6I GTAC 2 cut(s) 424, 803
CviAII CATG 6 cut(s) 373, 433, 437, 601, 711, 740
CviJI RGCY 7 cut(s) 49, 144, 312, 395, 664, 733, 840
CviKI_1 RGCY 7 cut(s) 49, 144, 312, 395, 664, 733, 840
CviQI GTAC 2 cut(s) 424, 803
DdeI CTNAG 3 cut(s) 145, 482, 544
DpnI GATC 2 cut(s) 209, 611
DpnII GATC 2 cut(s) 207, 609
Eco32I GATATC 1 cut(s) 361
Eco47I GGWCC 1 cut(s) 943
EcoNI CCTNNNNNAGG 1 cut(s) 818
EcoRI GAATTC 1 cut(s) 539
EcoRII CCWGG 2 cut(s) 34, 865
EcoRV GATATC 1 cut(s) 361
EcoT22I ATGCAT 1 cut(s) 438
FaeI CATG 6 cut(s) 376, 436, 440, 604, 714, 743
FaqI GGGAC 2 cut(s) 469, 837
FatI CATG 6 cut(s) 372, 432, 436, 600, 710, 739
FauI CCCGC 2 cut(s) 183, 715
Fnu4HI GCNGC 2 cut(s) 50, 841
FokI GGATG 1 cut(s) 91
Fsp4HI GCNGC 2 cut(s) 50, 841
FspBI CTAG 3 cut(s) 347, 396, 428
GluI GCNGC 2 cut(s) 50, 841
HapII CCGG 1 cut(s) 392
Hin1II CATG 6 cut(s) 376, 436, 440, 604, 714, 743
HindIII AAGCTT 2 cut(s) 142, 662
HinfI GANTC 6 cut(s) 566, 574, 770, 778, 849, 904
HpaII CCGG 1 cut(s) 392
Hpy166II GTNNAC 1 cut(s) 479
Hpy188I TCNGA 5 cut(s) 116, 198, 293, 367, 573
Hpy188III TCNNGA 3 cut(s) 347, 536, 625
Hpy8I GTNNAC 1 cut(s) 479
HpyAV CCTTC 3 cut(s) 542, 644, 717
HpyCH4V TGCA 7 cut(s) 52, 436, 632, 700, 714, 789, 843
HpyF10VI GCNNNNNNNGC 1 cut(s) 150
HpyF3I CTNAG 3 cut(s) 145, 482, 544
Hsp92II CATG 6 cut(s) 376, 436, 440, 604, 714, 743
Kzo9I GATC 2 cut(s) 207, 609
LmnI GCTCC 1 cut(s) 317
Lsp1109I GCAGC 2 cut(s) 36, 827
MaeI CTAG 3 cut(s) 347, 396, 428
MaeIII GTNAC 1 cut(s) 23
MalI GATC 2 cut(s) 209, 611
MboI GATC 2 cut(s) 207, 609
MboII GAAGA 3 cut(s) 92, 439, 876
MflI RGATCY 1 cut(s) 207
MlyI GAGTC 1 cut(s) 787
MnlI CCTC 6 cut(s) 198, 479, 589, 768, 814, 824
Mph1103I ATGCAT 1 cut(s) 438
MseI TTAA 6 cut(s) 68, 122, 131, 140, 338, 735
MslI CAYNNNNRTG 1 cut(s) 219
MspA1I CMGCKG 1 cut(s) 237
MspI CCGG 1 cut(s) 392
MspR9I CCNGG 2 cut(s) 36, 867
Mva1269I GAATGC 1 cut(s) 634
MvaI CCWGG 2 cut(s) 36, 867
MwoI GCNNNNNNNGC 1 cut(s) 150
NdeII GATC 2 cut(s) 207, 609
NlaIII CATG 6 cut(s) 376, 436, 440, 604, 714, 743
NlaIV GGNNCC 4 cut(s) 223, 313, 529, 944
NmeAIII GCCGAG 1 cut(s) 204
NmuCI GTSAC 1 cut(s) 23
NsiI ATGCAT 1 cut(s) 438
NspI RCATGY 4 cut(s) 376, 436, 604, 714
NspV TTCGAA 1 cut(s) 852
PaeI GCATGC 1 cut(s) 714
PciI ACATGT 1 cut(s) 372
PctI GAATGC 1 cut(s) 634
PfeI GAWTC 5 cut(s) 566, 574, 770, 849, 904
PkrI GCNGC 2 cut(s) 51, 842
PleI GAGTC 1 cut(s) 786
PpsI GAGTC 1 cut(s) 786
PscI ACATGT 1 cut(s) 372
PsiI TTATAA 2 cut(s) 585, 952
Psp6I CCWGG 2 cut(s) 34, 865
PspGI CCWGG 2 cut(s) 34, 865
PspN4I GGNNCC 4 cut(s) 223, 313, 529, 944
PspPI GGNCC 1 cut(s) 943
PsuI RGATCY 1 cut(s) 207
RsaI GTAC 2 cut(s) 425, 804
RsaNI GTAC 2 cut(s) 424, 803
RseI CAYNNNNRTG 1 cut(s) 219
SaqAI TTAA 6 cut(s) 68, 122, 131, 140, 338, 735
SatI GCNGC 2 cut(s) 50, 841
Sau3AI GATC 2 cut(s) 207, 609
Sau96I GGNCC 1 cut(s) 943
SchI GAGTC 1 cut(s) 787
ScrFI CCNGG 2 cut(s) 36, 867
SfuI TTCGAA 1 cut(s) 852
SinI GGWCC 1 cut(s) 943
SmiMI CAYNNNNRTG 1 cut(s) 219
SphI GCATGC 1 cut(s) 714
SsiI CCGC 3 cut(s) 176, 237, 708
SspMI CTAG 3 cut(s) 347, 396, 428
StyD4I CCNGG 2 cut(s) 34, 865
TaqI TCGA 2 cut(s) 608, 852
TfiI GAWTC 5 cut(s) 566, 574, 770, 849, 904
Tru1I TTAA 6 cut(s) 68, 122, 131, 140, 338, 735
Tru9I TTAA 6 cut(s) 68, 122, 131, 140, 338, 735
TseFI GTSAC 1 cut(s) 23
TseI GCWGC 2 cut(s) 49, 840
Tsp45I GTSAC 1 cut(s) 23
TspDTI ATGAA 2 cut(s) 675, 756
TspGWI ACGGA 2 cut(s) 833, 935
VpaK11BI GGWCC 1 cut(s) 943
XagI CCTNNNNNAGG 1 cut(s) 818
XapI RAATTY 9 cut(s) 15, 118, 199, 333, 387, 442, 539, 702, 858
XbaI TCTAGA 1 cut(s) 346
XceI RCATGY 4 cut(s) 376, 436, 604, 714
XspI CTAG 3 cut(s) 347, 396, 428
Zsp2I ATGCAT 1 cut(s) 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.