pycom02g18680

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
N/A
Physical Location & Seq
Forward (+)
16817687 .. 16818810
1124 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 828 bp
ATGAATAACTTTCTATTTAGTTTTTATTTTTTCCGTTTTGTTAGTTGTGTTACTTGCATTTATTGGTTCATTTTTACTTTAACTCAAGATATTGGTCTGACCTGGAGGGGGATAAACTTGACATATTATAAGTTTGATATTTGCATTGCATGTATAAGAGGCAATCTTGATTTGCTTAATCAAAGACGAGATCTAGAAGACCAAAATGCAATCTACCAGCAAAAGAAGACAAGCCAACTCAAGATTCACACAGAAATCAGAAAGAGAAAATCTGAGAGCTCATCAACCATGGCAGTCCCTCATGTTTTTGATGCTCCACACATCACATCAGATCATTTGGCTACACCCACAGTAATGAAATTTCTTTCTTGTAATTGGTCTTGTGAAATATCGTATACAATGATTTGTTCATGTGATTTATCCACGGTAATGTATGCGGTTGTCACAGGCTCGAATCAGGGCATTGGATTTGGAACAGTGAAGAAGTTGGCAGCCAATGGGACCATGGTGGTGTTAACTGCTTTAAATGAGAAAATGGGTCTTGAAGTTATTGAAAATTTGAAAGAGTGTGGCCTCTCTGACTGTTGCTTCCCTAGCGGATTCTGTCAAAAACCAATTTGGGAAACTAGATATCTTGGTATGATTCAAAATCATTTTTATAATCAAACTTCTTGTTCTCTGTGTACACTCTCATGTTGCAAATTTAACCTGAAACGCTTGCTAATTCAGAAATGTTTCGGAAATTATATAGAGTATACAAAACAACAAATCGTCAGAATTGATATACACTCAAATATTATAATCATTAATATTATAATCACCTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

276

Amino Acids

31.63

Weight (kDa)

8.51

Isoelectric Point (pI)

43.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 146 - 191 3.3e-06 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 4 cut(s) 129, 660, 800, 815
AccI GTMKAC 2 cut(s) 395, 755
AciI CCGC 2 cut(s) 437, 597
AcsI RAATTY 3 cut(s) 359, 556, 701
AfaI GTAC 1 cut(s) 685
AfiI CCNNNNNNNGG 1 cut(s) 108
AgsI TTSAA 4 cut(s) 545, 554, 562, 647
AjnI CCWGG 1 cut(s) 101
AjuI GAANNNNNNNTTGG 2 cut(s) 228, 260
AluBI AGCT 1 cut(s) 279
AluI AGCT 1 cut(s) 279
Alw21I GWGCWC 1 cut(s) 281
AoxI GGCC 1 cut(s) 571
ApeKI GCWGC 1 cut(s) 491
ApoI RAATTY 3 cut(s) 359, 556, 701
AseI ATTAAT 1 cut(s) 807
Asp700I GAANNNNTTC 1 cut(s) 734
AspS9I GGNCC 1 cut(s) 501
AsuHPI GGTGA 1 cut(s) 811
AvaII GGWCC 1 cut(s) 501
BanII GRGCYC 1 cut(s) 281
BbsI GAAGAC 2 cut(s) 204, 233
Bbv12I GWGCWC 1 cut(s) 281
BbvI GCAGC 1 cut(s) 503
BciT130I CCWGG 1 cut(s) 103
BfaI CTAG 3 cut(s) 194, 594, 627
BglII AGATCT 1 cut(s) 190
BisI GCNGC 1 cut(s) 492
BlsI GCNGC 1 cut(s) 493
Bme1390I CCNGG 1 cut(s) 103
Bme18I GGWCC 1 cut(s) 501
BmgT120I GGNCC 1 cut(s) 501
BmiI GGNNCC 1 cut(s) 502
BmrFI CCNGG 1 cut(s) 103
BmsI GCATC 1 cut(s) 301
BpiI GAAGAC 2 cut(s) 204, 233
BpmI CTGGAG 1 cut(s) 124
BpuEI CTTGAG 2 cut(s) 69, 224
BsaJI CCNNGG 3 cut(s) 288, 423, 504
Bsc4I CCNNNNNNNGG 1 cut(s) 108
Bse3DI GCAATG 1 cut(s) 144
BseBI CCWGG 1 cut(s) 103
BseDI CCNNGG 3 cut(s) 288, 423, 504
BseLI CCNNNNNNNGG 1 cut(s) 108
BseMI GCAATG 1 cut(s) 144
BseMII CTCAG 1 cut(s) 264
BseXI GCAGC 1 cut(s) 503
BshFI GGCC 1 cut(s) 573
BsiHKAI GWGCWC 1 cut(s) 281
BslFI GGGAC 2 cut(s) 281, 514
BslI CCNNNNNNNGG 1 cut(s) 108
BsmFI GGGAC 2 cut(s) 281, 514
BsnI GGCC 1 cut(s) 573
Bsp1286I GDGCHC 1 cut(s) 281
Bsp1407I TGTACA 1 cut(s) 683
Bsp143I GATC 2 cut(s) 190, 331
Bsp19I CCATGG 2 cut(s) 288, 504
BspACI CCGC 2 cut(s) 437, 597
BspANI GGCC 1 cut(s) 573
BspCNI CTCAG 1 cut(s) 265
BspLI GGNNCC 1 cut(s) 502
BsrDI GCAATG 1 cut(s) 144
BsrGI TGTACA 1 cut(s) 683
BssECI CCNNGG 3 cut(s) 288, 423, 504
BssMI GATC 2 cut(s) 190, 331
BssNAI GTATAC 2 cut(s) 396, 756
BssT1I CCWWGG 2 cut(s) 288, 504
Bst1107I GTATAC 2 cut(s) 396, 756
Bst2UI CCWGG 1 cut(s) 103
Bst4CI ACNGT 4 cut(s) 352, 427, 478, 584
BstAUI TGTACA 1 cut(s) 683
BstC8I GCNNGC 1 cut(s) 719
BstDEI CTNAG 1 cut(s) 273
BstDSI CCRYGG 3 cut(s) 288, 423, 504
BstKTI GATC 2 cut(s) 193, 334
BstMBI GATC 2 cut(s) 190, 331
BstMWI GCNNNNNNNGC 1 cut(s) 594
BstNI CCWGG 1 cut(s) 103
BstNSI RCATGY 1 cut(s) 153
BstSCI CCNGG 1 cut(s) 101
BstV1I GCAGC 1 cut(s) 503
BstV2I GAAGAC 2 cut(s) 204, 233
BstX2I RGATCY 1 cut(s) 190
BstYI RGATCY 1 cut(s) 190
BstZ17I GTATAC 2 cut(s) 396, 756
BsuRI GGCC 1 cut(s) 573
BtgI CCRYGG 3 cut(s) 288, 423, 504
BtsIMutI CAGTG 1 cut(s) 483
Cac8I GCNNGC 1 cut(s) 719
Cfr13I GGNCC 1 cut(s) 501
Csp6I GTAC 1 cut(s) 684
CviAII CATG 6 cut(s) 150, 289, 302, 411, 505, 693
CviJI RGCY 6 cut(s) 234, 279, 341, 450, 494, 573
CviKI_1 RGCY 6 cut(s) 234, 279, 341, 450, 494, 573
CviQI GTAC 1 cut(s) 684
DdeI CTNAG 1 cut(s) 273
DpnI GATC 2 cut(s) 192, 333
DpnII GATC 2 cut(s) 190, 331
DraI TTTAAA 1 cut(s) 525
Ecl136II GAGCTC 1 cut(s) 279
Eco130I CCWWGG 2 cut(s) 288, 504
Eco24I GRGCYC 1 cut(s) 281
Eco32I GATATC 1 cut(s) 632
Eco47I GGWCC 1 cut(s) 501
Eco53kI GAGCTC 1 cut(s) 279
EcoICRI GAGCTC 1 cut(s) 279
EcoRII CCWGG 1 cut(s) 101
EcoRV GATATC 1 cut(s) 632
EcoT14I CCWWGG 2 cut(s) 288, 504
EcoT38I GRGCYC 1 cut(s) 281
ErhI CCWWGG 2 cut(s) 288, 504
FaeI CATG 6 cut(s) 153, 292, 305, 414, 508, 696
FaqI GGGAC 2 cut(s) 281, 514
FatI CATG 6 cut(s) 149, 288, 301, 410, 504, 692
FblI GTMKAC 2 cut(s) 395, 755
Fnu4HI GCNGC 1 cut(s) 492
FriOI GRGCYC 1 cut(s) 281
Fsp4HI GCNGC 1 cut(s) 492
FspBI CTAG 3 cut(s) 194, 594, 627
GluI GCNGC 1 cut(s) 492
GsuI CTGGAG 1 cut(s) 124
HaeIII GGCC 1 cut(s) 573
Hin1II CATG 6 cut(s) 153, 292, 305, 414, 508, 696
HincII GTYRAC 1 cut(s) 516
HindII GTYRAC 1 cut(s) 516
HinfI GANTC 4 cut(s) 244, 454, 600, 643
HpaI GTTAAC 1 cut(s) 516
HphI GGTGA 1 cut(s) 811
Hpy166II GTNNAC 5 cut(s) 396, 516, 684, 686, 756
Hpy188I TCNGA 8 cut(s) 99, 260, 274, 331, 580, 729, 740, 776
Hpy188III TCNNGA 5 cut(s) 86, 167, 194, 241, 542
Hpy8I GTNNAC 5 cut(s) 396, 516, 684, 686, 756
HpyCH4III ACNGT 4 cut(s) 352, 427, 478, 584
HpyCH4V TGCA 5 cut(s) 57, 144, 149, 209, 699
HpyF10VI GCNNNNNNNGC 1 cut(s) 594
HpyF3I CTNAG 1 cut(s) 273
Hsp92II CATG 6 cut(s) 153, 292, 305, 414, 508, 696
KspAI GTTAAC 1 cut(s) 516
Kzo9I GATC 2 cut(s) 190, 331
LmnI GCTCC 1 cut(s) 319
LpnPI CCDG 6 cut(s) 88, 115, 230, 432, 443, 722
Lsp1109I GCAGC 1 cut(s) 503
LweI GCATC 1 cut(s) 301
MaeI CTAG 3 cut(s) 194, 594, 627
MaeIII GTNAC 2 cut(s) 49, 442
MalI GATC 2 cut(s) 192, 333
MboI GATC 2 cut(s) 190, 331
MboII GAAGA 3 cut(s) 209, 238, 493
MflI RGATCY 1 cut(s) 190
MhlI GDGCHC 1 cut(s) 281
MluCI AATT 8 cut(s) 359, 373, 556, 615, 701, 723, 742, 777
MnlI CCTC 4 cut(s) 99, 152, 309, 584
MroXI GAANNNNTTC 1 cut(s) 734
MseI TTAA 7 cut(s) 80, 177, 515, 524, 705, 807, 826
MslI CAYNNNNRTG 4 cut(s) 353, 428, 509, 691
MspR9I CCNGG 1 cut(s) 103
MvaI CCWGG 1 cut(s) 103
MwoI GCNNNNNNNGC 1 cut(s) 594
NcoI CCATGG 2 cut(s) 288, 504
NdeII GATC 2 cut(s) 190, 331
NlaIII CATG 6 cut(s) 153, 292, 305, 414, 508, 696
NlaIV GGNNCC 1 cut(s) 502
NmuCI GTSAC 1 cut(s) 442
NspI RCATGY 1 cut(s) 153
PdmI GAANNNNTTC 1 cut(s) 734
PfeI GAWTC 4 cut(s) 244, 454, 600, 643
PkrI GCNGC 1 cut(s) 493
PshBI ATTAAT 1 cut(s) 807
PsiI TTATAA 4 cut(s) 129, 660, 800, 815
Psp124BI GAGCTC 1 cut(s) 281
Psp6I CCWGG 1 cut(s) 101
PspGI CCWGG 1 cut(s) 101
PspN4I GGNNCC 1 cut(s) 502
PspPI GGNCC 1 cut(s) 501
PsuI RGATCY 1 cut(s) 190
RsaI GTAC 1 cut(s) 685
RsaNI GTAC 1 cut(s) 684
RseI CAYNNNNRTG 4 cut(s) 353, 428, 509, 691
SacI GAGCTC 1 cut(s) 281
SaqAI TTAA 7 cut(s) 80, 177, 515, 524, 705, 807, 826
SatI GCNGC 1 cut(s) 492
Sau3AI GATC 2 cut(s) 190, 331
Sau96I GGNCC 1 cut(s) 501
ScrFI CCNGG 1 cut(s) 103
SduI GDGCHC 1 cut(s) 281
SetI ASST 4 cut(s) 104, 281, 711, 824
SfaNI GCATC 1 cut(s) 301
SinI GGWCC 1 cut(s) 501
SmiMI CAYNNNNRTG 4 cut(s) 353, 428, 509, 691
SmlI CTYRAG 2 cut(s) 84, 239
SmoI CTYRAG 2 cut(s) 84, 239
Sse9I AATT 8 cut(s) 359, 373, 556, 615, 701, 723, 742, 777
SsiI CCGC 2 cut(s) 437, 597
SspI AATATT 2 cut(s) 796, 811
SspMI CTAG 3 cut(s) 194, 594, 627
SstI GAGCTC 1 cut(s) 281
StyD4I CCNGG 1 cut(s) 101
StyI CCWWGG 2 cut(s) 288, 504
TaaI ACNGT 4 cut(s) 352, 427, 478, 584
TaqI TCGA 1 cut(s) 452
TasI AATT 8 cut(s) 359, 373, 556, 615, 701, 723, 742, 777
TatI WGTACW 1 cut(s) 683
TfiI GAWTC 4 cut(s) 244, 454, 600, 643
Tru1I TTAA 7 cut(s) 80, 177, 515, 524, 705, 807, 826
Tru9I TTAA 7 cut(s) 80, 177, 515, 524, 705, 807, 826
TscAI CASTG 1 cut(s) 483
TseFI GTSAC 1 cut(s) 442
TseI GCWGC 1 cut(s) 491
Tsp45I GTSAC 1 cut(s) 442
TspDTI ATGAA 4 cut(s) 17, 58, 371, 399
TspGWI ACGGA 1 cut(s) 23
TspRI CASTG 1 cut(s) 483
VpaK11BI GGWCC 1 cut(s) 501
VspI ATTAAT 1 cut(s) 807
XapI RAATTY 3 cut(s) 359, 556, 701
XbaI TCTAGA 1 cut(s) 193
XceI RCATGY 1 cut(s) 153
XcmI CCANNNNNNNNNTGG 1 cut(s) 502
XmiI GTMKAC 2 cut(s) 395, 755
XmnI GAANNNNTTC 1 cut(s) 734
XspI CTAG 3 cut(s) 194, 594, 627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.