pycom02g18700

Germin-like protein subfamily 3 member

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
N/A
Physical Location & Seq
Forward (+)
16829452 .. 16832286
2835 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1908 bp
ATGCTACTTGTTCCTGTTTATATATATATATATATATATATATATAATGTGCTACTGTCATGCTTGATGGATGTAATGCCAAGAATCGCACTTAGACACAAGTTTTCCATTTTGTTCATGCAAGGTGTTGAGTTTGGTTTCTCTAGGTTTTTGGTTTTTACATTTTTGGTGCTTGTAATATTATTTTCAACGAGGTCGCCGCAGTCATGTTTTGTTTATAATCAAAGACAAATTGAAAATTGTCACTCTGTTAGACGGAAGTGCCATGTAAGGCATGCGCCTCTCAGTTGCGCGAGCGGTCTTGAGAATCGATGGCTTGGTGAGCCTCCACTCCCACCCCAGGCATCCGAACCATTCTTTGTGAGCAAAAAAATTGTGCTTGCTGGGTTCATTGACACCCAAAACGAGCCATTCCAAAGGCTGACGGCTGGGGACGATTCACCACTGTTTTCTCAGTTTTCAACAGCTAGAATCCAGGGATGGTGGGAATTTCTGATGGGTTTCTCACTCATCATATTGGAAATCCCACTCTTAACAAGCATGTATGATCTAGAAGTTAAATGCATAGGAGTGTTTGAACTGTGGCATTTAGTCTCACGAGTTTGTGGTGAGGACGGATTCAAATTTCGGAAACGACACACTGTCTTGACCTACAACCCCAATTCATGTCTTCAAAATAAAAAAGACATAAAAAATGCTTACAAGGGAAGGAACCTGTTGGACTTTATAGAAATCCTCTCCTCCTTCATTAAGCTTATCAAAGAACTGCGTGATGGCATTTTGGGTAGAAATTTATTGACAATTTTAATTTTATTGTTATTTTCATCATTTCGATATATAGTAATTGTAGGGATTGAAATAAAATTTCTCTTATTTTTTCTATGGTTTAACCTTTTGGAACAATCTAACTCGGTGACTATATTGAAATGGCCAAAAAATGTGTCTCAACTCTTTTTACTTTATTTTTTCTTTAAAAAAAAAATAAAAACATTCTTACTACTTGATGTGCTAATTAAATGGGATTGCAAACAACTTGCTTTTACAACAAAGTTTGTTTTGGTTACGTTGGTTAGAGCTGTGTGTTTCTTCATTTTTACCACAGACTATTCCTTGGTAGTGATATATGATTATGCTAAGGTTACAATGATTAATACAGATTGTTATTACTATCATATGGTTGATGGTTACGTTGTGAACGTCATATTACACTGTTATTGTACGTTAATTTACATTGTTAGTGTAAGTTTTTTTTTTATTAAAAGGTACGGTAGACTAACCCTTCTAATAAACAGAAAATTTTCTCTATTTTTATTTTGTTGTTATGATAGATCATTGTACTTGCAGTTAATTGTATTGGTTTCTTGTCTGAGGCAAATTCCAATGATTGGACAAGTTCAACCCATTAATTTCGAGTGTTGTAGTCGTGCTTTTGCAATAGTTGTATGTGGTCGTGAGTTTTGTGGTCTAATCTATCAACGTAACTTTATGCGGTATCGCTCTTTTGTGATGACATTATGTTATCTCAATAATGACCAATGTGTGTGCCGATATGGATCTGTTGCGTCTACTGTTTGTGACGGAATCTGTACTAGTGCCGATTTGTACGGTTGTGCTCGTGGTTGTCATATAGGAGTTTTACTTAATTTTAACACCTTTGTATTAATGAGTGAAATACTATGTCCTTTCTTGTCAAAGAAAAACTATATCTTTAAAAGCTCCGAGATCGTATCTGTAAATTTTCTATATTTGGTTGCTTTCCTTGTCATCTCATGGCAAATTATGGAACAATGTACCCACAATCACAAGATTTTTTTATATAACAAAATACTGACAATCAGGTGTATAAATAATAAATTAGTATCGAACTCATCATTTATAATTTTAAAACTAAAAATCTCTTGCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

636

Amino Acids

74.1

Weight (kDa)

9.17

Isoelectric Point (pI)

45.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 219, 1877
AccB7I CCANNNNNTGG 1 cut(s) 1385
AccBSI CCGCTC 1 cut(s) 297
AccI GTMKAC 2 cut(s) 1270, 1565
AccII CGCG 1 cut(s) 293
AciI CCGC 3 cut(s) 200, 297, 1489
AclWI GGATC 1 cut(s) 1561
AcoI YGGCCR 1 cut(s) 929
AcsI RAATTY 7 cut(s) 488, 623, 790, 863, 1295, 1374, 1735
AfaI GTAC 6 cut(s) 1219, 1265, 1337, 1588, 1604, 1792
AfiI CCNNNNNNNGG 2 cut(s) 340, 1385
AgsI TTSAA 9 cut(s) 189, 236, 462, 578, 622, 674, 857, 925, 1397
AhdI GACNNNNNGTC 1 cut(s) 641
AhlI ACTAGT 1 cut(s) 1589
AjnI CCWGG 2 cut(s) 339, 474
AluBI AGCT 4 cut(s) 467, 754, 1076, 1716
AluI AGCT 4 cut(s) 467, 754, 1076, 1716
Alw21I GWGCWC 1 cut(s) 1615
Alw26I GTCTC 2 cut(s) 598, 948
AlwI GGATC 1 cut(s) 1561
AoxI GGCC 1 cut(s) 929
ApoI RAATTY 7 cut(s) 488, 623, 790, 863, 1295, 1374, 1735
ArsI GACNNNNNNTTYG 2 cut(s) 926, 958
AseI ATTAAT 3 cut(s) 1149, 1404, 1661
Asp700I GAANNNNTTC 1 cut(s) 1297
AspLEI GCGC 2 cut(s) 280, 293
AsuHPI GGTGA 4 cut(s) 332, 432, 620, 925
BalI TGGCCA 1 cut(s) 931
BauI CACGAG 2 cut(s) 597, 1614
BbsI GAAGAC 1 cut(s) 662
Bbv12I GWGCWC 1 cut(s) 1615
BccI CCATC 6 cut(s) 61, 306, 474, 490, 767, 1175
BceAI ACGGC 1 cut(s) 441
BciT130I CCWGG 2 cut(s) 341, 476
BcoDI GTCTC 2 cut(s) 598, 948
BcuI ACTAGT 1 cut(s) 1589
BfaI CTAG 4 cut(s) 144, 468, 551, 1590
BisI GCNGC 1 cut(s) 200
BlsI GCNGC 1 cut(s) 201
Bme1390I CCNGG 2 cut(s) 341, 476
BmeRI GACNNNNNGTC 1 cut(s) 641
BmiI GGNNCC 1 cut(s) 713
BmrFI CCNGG 2 cut(s) 341, 476
BmsI GCATC 1 cut(s) 353
BpiI GAAGAC 1 cut(s) 662
Bpu10I CCTNAGC 1 cut(s) 1134
BpuEI CTTGAG 1 cut(s) 323
Bsa29I ATCGAT 1 cut(s) 310
BsaBI GATNNNNATC 1 cut(s) 1552
BsaJI CCNNGG 3 cut(s) 339, 475, 1110
Bsc4I CCNNNNNNNGG 2 cut(s) 340, 1385
Bse8I GATNNNNATC 1 cut(s) 1552
BseBI CCWGG 2 cut(s) 341, 476
BseCI ATCGAT 1 cut(s) 310
BseDI CCNNGG 3 cut(s) 339, 475, 1110
BseGI GGATG 3 cut(s) 76, 344, 485
BseJI GATNNNNATC 1 cut(s) 1552
BseLI CCNNNNNNNGG 2 cut(s) 340, 1385
BseMII CTCAG 3 cut(s) 298, 467, 1358
BseRI GAGGAG 1 cut(s) 730
BseYI CCCAGC 2 cut(s) 383, 428
Bsh1236I CGCG 1 cut(s) 293
BshFI GGCC 1 cut(s) 931
BshVI ATCGAT 1 cut(s) 310
BsiHKAI GWGCWC 1 cut(s) 1615
BslFI GGGAC 1 cut(s) 446
BslI CCNNNNNNNGG 2 cut(s) 340, 1385
BsmAI GTCTC 2 cut(s) 598, 948
BsmFI GGGAC 1 cut(s) 446
BsnI GGCC 1 cut(s) 931
Bsp1286I GDGCHC 1 cut(s) 1615
Bsp143I GATC 4 cut(s) 547, 1328, 1553, 1722
BspACI CCGC 3 cut(s) 200, 297, 1489
BspANI GGCC 1 cut(s) 931
BspCNI CTCAG 3 cut(s) 297, 466, 1359
BspDI ATCGAT 1 cut(s) 310
BspFNI CGCG 1 cut(s) 293
BspLI GGNNCC 1 cut(s) 713
BspPI GGATC 1 cut(s) 1561
BsrBI CCGCTC 1 cut(s) 297
BssECI CCNNGG 3 cut(s) 339, 475, 1110
BssMI GATC 4 cut(s) 547, 1328, 1553, 1722
BssSI CACGAG 2 cut(s) 597, 1614
BssT1I CCWWGG 1 cut(s) 1110
Bst2BI CACGAG 2 cut(s) 597, 1614
Bst2UI CCWGG 2 cut(s) 341, 476
Bst4CI ACNGT 8 cut(s) 57, 447, 582, 643, 1211, 1268, 1570, 1607
BstC8I GCNNGC 3 cut(s) 276, 295, 381
BstDEI CTNAG 5 cut(s) 92, 284, 453, 1134, 1367
BstF5I GGATG 3 cut(s) 76, 344, 485
BstFNI CGCG 1 cut(s) 293
BstHHI GCGC 2 cut(s) 280, 293
BstKTI GATC 4 cut(s) 550, 1331, 1556, 1725
BstMAI GTCTC 2 cut(s) 598, 948
BstMBI GATC 4 cut(s) 547, 1328, 1553, 1722
BstMWI GCNNNNNNNGC 1 cut(s) 322
BstNI CCWGG 2 cut(s) 341, 476
BstNSI RCATGY 2 cut(s) 278, 544
BstSCI CCNGG 2 cut(s) 339, 474
BstUI CGCG 1 cut(s) 293
BstV2I GAAGAC 1 cut(s) 662
BstX2I RGATCY 1 cut(s) 1553
BstYI RGATCY 1 cut(s) 1553
Bsu15I ATCGAT 1 cut(s) 310
BsuRI GGCC 1 cut(s) 931
BsuTUI ATCGAT 1 cut(s) 310
BtsCI GGATG 3 cut(s) 76, 344, 485
BtsIMutI CAGTG 3 cut(s) 443, 639, 1207
Cac8I GCNNGC 3 cut(s) 276, 295, 381
CfoI GCGC 2 cut(s) 280, 293
ClaI ATCGAT 1 cut(s) 310
CseI GACGC 1 cut(s) 1551
Csp6I GTAC 6 cut(s) 1218, 1264, 1336, 1587, 1603, 1791
CviAII CATG 8 cut(s) 60, 118, 207, 266, 275, 541, 666, 1770
CviQI GTAC 6 cut(s) 1218, 1264, 1336, 1587, 1603, 1791
DdeI CTNAG 5 cut(s) 92, 284, 453, 1134, 1367
DpnI GATC 4 cut(s) 549, 1330, 1555, 1724
DpnII GATC 4 cut(s) 547, 1328, 1553, 1722
DraI TTTAAA 3 cut(s) 973, 1711, 1884
DriI GACNNNNNGTC 1 cut(s) 641
EaeI YGGCCR 1 cut(s) 929
Eam1105I GACNNNNNGTC 1 cut(s) 641
Eco130I CCWWGG 1 cut(s) 1110
EcoRII CCWGG 2 cut(s) 339, 474
EcoT14I CCWWGG 1 cut(s) 1110
EcoT22I ATGCAT 1 cut(s) 566
ErhI CCWWGG 1 cut(s) 1110
FaeI CATG 8 cut(s) 63, 121, 210, 269, 278, 544, 669, 1773
FaqI GGGAC 1 cut(s) 446
FatI CATG 8 cut(s) 59, 117, 206, 265, 274, 540, 665, 1769
FauNDI CATATG 1 cut(s) 1173
FblI GTMKAC 2 cut(s) 1270, 1565
Fnu4HI GCNGC 1 cut(s) 200
FokI GGATG 3 cut(s) 83, 331, 492
Fsp4HI GCNGC 1 cut(s) 200
FspBI CTAG 4 cut(s) 144, 468, 551, 1590
GlaI GCGC 2 cut(s) 279, 292
GluI GCNGC 1 cut(s) 200
GsaI CCCAGC 2 cut(s) 387, 432
HaeIII GGCC 1 cut(s) 931
HgaI GACGC 1 cut(s) 1551
HhaI GCGC 2 cut(s) 280, 293
Hin1II CATG 8 cut(s) 63, 121, 210, 269, 278, 544, 669, 1773
Hin6I GCGC 2 cut(s) 278, 291
HinP1I GCGC 2 cut(s) 278, 291
HindIII AAGCTT 1 cut(s) 752
HinfI GANTC 6 cut(s) 84, 307, 437, 471, 618, 1581
HphI GGTGA 4 cut(s) 332, 432, 620, 925
Hpy166II GTNNAC 3 cut(s) 1195, 1271, 1566
Hpy188I TCNGA 5 cut(s) 349, 495, 630, 1368, 1720
Hpy188III TCNNGA 5 cut(s) 302, 551, 597, 646, 1451
Hpy8I GTNNAC 3 cut(s) 1195, 1271, 1566
HpyAV CCTTC 3 cut(s) 702, 754, 1289
HpyCH4III ACNGT 8 cut(s) 57, 447, 582, 643, 1211, 1268, 1570, 1607
HpyCH4IV ACGT 5 cut(s) 1064, 1188, 1197, 1220, 1477
HpyCH4V TGCA 6 cut(s) 121, 564, 1026, 1342, 1433, 1902
HpyF10VI GCNNNNNNNGC 1 cut(s) 322
HpyF3I CTNAG 5 cut(s) 92, 284, 453, 1134, 1367
HpySE526I ACGT 5 cut(s) 1064, 1188, 1197, 1220, 1477
Hsp92II CATG 8 cut(s) 63, 121, 210, 269, 278, 544, 669, 1773
HspAI GCGC 2 cut(s) 278, 291
Kzo9I GATC 4 cut(s) 547, 1328, 1553, 1722
LmnI GCTCC 1 cut(s) 1721
LpnPI CCDG 9 cut(s) 27, 326, 353, 369, 414, 461, 488, 728, 1822
LweI GCATC 1 cut(s) 353
MaeI CTAG 4 cut(s) 144, 468, 551, 1590
MaeII ACGT 5 cut(s) 1064, 1188, 1197, 1220, 1477
MaeIII GTNAC 7 cut(s) 242, 913, 1060, 1138, 1184, 1478, 1574
MalI GATC 4 cut(s) 549, 1330, 1555, 1724
MbiI CCGCTC 1 cut(s) 297
MboI GATC 4 cut(s) 547, 1328, 1553, 1722
MboII GAAGA 2 cut(s) 662, 1078
MflI RGATCY 1 cut(s) 1553
MhlI GDGCHC 1 cut(s) 1615
MlsI TGGCCA 1 cut(s) 931
MluNI TGGCCA 1 cut(s) 931
MmeI TCCRAC 1 cut(s) 699
MnlI CCTC 7 cut(s) 186, 291, 336, 604, 746, 751, 1362
Mox20I TGGCCA 1 cut(s) 931
Mph1103I ATGCAT 1 cut(s) 566
MroXI GAANNNNTTC 1 cut(s) 1297
MscI TGGCCA 1 cut(s) 931
MslI CAYNNNNRTG 1 cut(s) 569
Msp20I TGGCCA 1 cut(s) 931
MspR9I CCNGG 2 cut(s) 341, 476
MvaI CCWGG 2 cut(s) 341, 476
MvnI CGCG 1 cut(s) 293
MwoI GCNNNNNNNGC 1 cut(s) 322
NdeI CATATG 1 cut(s) 1173
NdeII GATC 4 cut(s) 547, 1328, 1553, 1722
NlaIII CATG 8 cut(s) 63, 121, 210, 269, 278, 544, 669, 1773
NlaIV GGNNCC 1 cut(s) 713
NmuCI GTSAC 3 cut(s) 242, 913, 1574
NsiI ATGCAT 1 cut(s) 566
NspI RCATGY 2 cut(s) 278, 544
PaeI GCATGC 1 cut(s) 278
PcsI WCGNNNNNNNCGW 1 cut(s) 1194
PdmI GAANNNNTTC 1 cut(s) 1297
PfeI GAWTC 6 cut(s) 84, 307, 437, 471, 618, 1581
PflMI CCANNNNNTGG 1 cut(s) 1385
PkrI GCNGC 1 cut(s) 201
PshBI ATTAAT 3 cut(s) 1149, 1404, 1661
PsiI TTATAA 2 cut(s) 219, 1877
Psp6I CCWGG 2 cut(s) 339, 474
PspFI CCCAGC 2 cut(s) 383, 428
PspGI CCWGG 2 cut(s) 339, 474
PspN4I GGNNCC 1 cut(s) 713
PsuI RGATCY 1 cut(s) 1553
RsaI GTAC 6 cut(s) 1219, 1265, 1337, 1588, 1604, 1792
RsaNI GTAC 6 cut(s) 1218, 1264, 1336, 1587, 1603, 1791
RseI CAYNNNNRTG 1 cut(s) 569
SatI GCNGC 1 cut(s) 200
Sau3AI GATC 4 cut(s) 547, 1328, 1553, 1722
ScrFI CCNGG 2 cut(s) 341, 476
SduI GDGCHC 1 cut(s) 1615
SfaNI GCATC 1 cut(s) 353
SmiMI CAYNNNNRTG 1 cut(s) 569
SmlI CTYRAG 1 cut(s) 302
SmoI CTYRAG 1 cut(s) 302
SpeI ACTAGT 1 cut(s) 1589
SphI GCATGC 1 cut(s) 278
SsiI CCGC 3 cut(s) 200, 297, 1489
SspI AATATT 1 cut(s) 180
SspMI CTAG 4 cut(s) 144, 468, 551, 1590
StyD4I CCNGG 2 cut(s) 339, 474
StyI CCWWGG 1 cut(s) 1110
TaaI ACNGT 8 cut(s) 57, 447, 582, 643, 1211, 1268, 1570, 1607
TaiI ACGT 5 cut(s) 1067, 1191, 1200, 1223, 1480
TaqI TCGA 4 cut(s) 310, 832, 1410, 1862
TatI WGTACW 2 cut(s) 1335, 1586
TauI GCSGC 1 cut(s) 202
TfiI GAWTC 6 cut(s) 84, 307, 437, 471, 618, 1581
TscAI CASTG 3 cut(s) 450, 646, 1214
TseFI GTSAC 3 cut(s) 242, 913, 1574
Tsp45I GTSAC 3 cut(s) 242, 913, 1574
TspDTI ATGAA 6 cut(s) 106, 379, 654, 736, 813, 1078
TspGWI ACGGA 3 cut(s) 271, 630, 1593
TspRI CASTG 3 cut(s) 450, 646, 1214
Van91I CCANNNNNTGG 1 cut(s) 1385
VspI ATTAAT 3 cut(s) 1149, 1404, 1661
XapI RAATTY 7 cut(s) 488, 623, 790, 863, 1295, 1374, 1735
XbaI TCTAGA 1 cut(s) 550
XceI RCATGY 2 cut(s) 278, 544
XmiI GTMKAC 2 cut(s) 1270, 1565
XmnI GAANNNNTTC 1 cut(s) 1297
XspI CTAG 4 cut(s) 144, 468, 551, 1590
Zsp2I ATGCAT 1 cut(s) 566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.