pycom02g19680

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
N/A
Physical Location & Seq
Reverse (-)
17615228 .. 17616243
1016 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 603 bp
ATGGATGAAATTGACAGTATTGGATCTGCTCGTACGGACTCTGGTAGTGGGAAAGGAGATAGTGAGGTGCAGTGGACTATGTTAGAGCTTCTCAACCAACTGGATGGATTTGAGGCAACAAACAGGCTCGTACAGGTTTTAATGGCCACAAATTGTGTTGATATGCTGGATCCAACGCTCCTCAGGCCAGGACGAATTGACAGGAAGGTTAAATTTCCAAATCCTAATGAACAGGTACATGAAAGTCCATATACTGGTGGGATTATTACGTTCAGTAGGTTTGTTGATGCATTCATAAGTCTAGTTTTAAGCTTGTTCTTTCAATTGATTGCTTATATCTCGTCTATGGGTTTCATTCATGCGGGTGCAGAGAAGATAAATGGTGCATCTGGTGCAGAGCTGAAGGAAGTCAGGTTTTGTGTGCACGTTTTAAAGAAGCACATGTTGTCATTCTCCTTGCTGCAGTCAGTTTGCACAGAAGCAGGGATGTTTGCTTTGAGGGAGAGGAGGATTCATGTGACACAAGAAAATTTTGAGATGGCAGTTGCCAAGGTAATGAAGACGGAGACTAAGAACATGTCGTTGTGGAAGTTATGGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008134 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033554 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

201

Amino Acids

22.48

Weight (kDa)

6.21

Isoelectric Point (pI)

30.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 1 - 73 2.7e-12 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 254
AciI CCGC 1 cut(s) 362
AclWI GGATC 3 cut(s) 31, 164, 177
AcoI YGGCCR 1 cut(s) 144
AcsI RAATTY 2 cut(s) 212, 529
AcuI CTGAAG 1 cut(s) 422
AfaI GTAC 3 cut(s) 34, 132, 237
AfiI CCNNNNNNNGG 1 cut(s) 254
AflIII ACRYGT 2 cut(s) 441, 576
AgsI TTSAA 1 cut(s) 323
AjnI CCWGG 1 cut(s) 187
AluBI AGCT 3 cut(s) 88, 312, 400
AluI AGCT 3 cut(s) 88, 312, 400
Alw21I GWGCWC 1 cut(s) 426
Alw26I GTCTC 1 cut(s) 560
Alw44I GTGCAC 1 cut(s) 422
AlwI GGATC 3 cut(s) 31, 164, 177
AoxI GGCC 2 cut(s) 144, 185
ApaLI GTGCAC 1 cut(s) 422
ApeKI GCWGC 1 cut(s) 460
ApoI RAATTY 2 cut(s) 212, 529
AxyI CCTNAGG 1 cut(s) 182
BaeGI GKGCMC 1 cut(s) 426
BalI TGGCCA 1 cut(s) 146
BamHI GGATCC 1 cut(s) 169
BbsI GAAGAC 1 cut(s) 566
Bbv12I GWGCWC 1 cut(s) 426
BbvI GCAGC 1 cut(s) 447
BccI CCATC 2 cut(s) 98, 532
BciT130I CCWGG 1 cut(s) 189
BcoDI GTCTC 1 cut(s) 560
BfaI CTAG 1 cut(s) 302
BfmI CTRYAG 1 cut(s) 461
BisI GCNGC 1 cut(s) 461
BlsI GCNGC 1 cut(s) 462
Bme1390I CCNGG 1 cut(s) 189
BmiI GGNNCC 1 cut(s) 171
BmrFI CCNGG 1 cut(s) 189
BmsI GCATC 2 cut(s) 277, 395
BpiI GAAGAC 1 cut(s) 566
BsaJI CCNNGG 1 cut(s) 549
Bsc4I CCNNNNNNNGG 1 cut(s) 254
Bse1I ACTGG 2 cut(s) 105, 259
Bse21I CCTNAGG 1 cut(s) 182
BseBI CCWGG 1 cut(s) 189
BseDI CCNNGG 1 cut(s) 549
BseGI GGATG 3 cut(s) 10, 109, 492
BseLI CCNNNNNNNGG 1 cut(s) 254
BseMII CTCAG 1 cut(s) 196
BseNI ACTGG 2 cut(s) 105, 259
BseRI GAGGAG 2 cut(s) 170, 520
BseSI GKGCMC 1 cut(s) 426
BseXI GCAGC 1 cut(s) 447
BsgI GTGCAG 3 cut(s) 89, 387, 414
BshFI GGCC 2 cut(s) 146, 187
BsiHKAI GWGCWC 1 cut(s) 426
BsiWI CGTACG 1 cut(s) 32
BslI CCNNNNNNNGG 1 cut(s) 254
BsmAI GTCTC 1 cut(s) 560
BsmI GAATGC 1 cut(s) 290
BsnI GGCC 2 cut(s) 146, 187
Bsp1286I GDGCHC 1 cut(s) 426
Bsp143I GATC 2 cut(s) 23, 169
BspACI CCGC 1 cut(s) 362
BspANI GGCC 2 cut(s) 146, 187
BspCNI CTCAG 1 cut(s) 195
BspLI GGNNCC 1 cut(s) 171
BspMAI CTGCAG 1 cut(s) 465
BspPI GGATC 3 cut(s) 31, 164, 177
BsrI ACTGG 2 cut(s) 105, 259
BssECI CCNNGG 1 cut(s) 549
BssMI GATC 2 cut(s) 23, 169
BssT1I CCWWGG 1 cut(s) 549
Bst2UI CCWGG 1 cut(s) 189
Bst4CI ACNGT 1 cut(s) 17
BstAPI GCANNNNNTGC 1 cut(s) 392
BstDEI CTNAG 2 cut(s) 182, 570
BstF5I GGATG 3 cut(s) 10, 109, 492
BstKTI GATC 2 cut(s) 26, 172
BstMAI GTCTC 1 cut(s) 560
BstMBI GATC 2 cut(s) 23, 169
BstMWI GCNNNNNNNGC 2 cut(s) 184, 392
BstNI CCWGG 1 cut(s) 189
BstNSI RCATGY 2 cut(s) 445, 580
BstSCI CCNGG 1 cut(s) 187
BstSFI CTRYAG 1 cut(s) 461
BstSLI GKGCMC 1 cut(s) 426
BstV1I GCAGC 1 cut(s) 447
BstV2I GAAGAC 1 cut(s) 566
BstX2I RGATCY 2 cut(s) 23, 169
BstXI CCANNNNNNTGG 1 cut(s) 104
BstYI RGATCY 2 cut(s) 23, 169
Bsu36I CCTNAGG 1 cut(s) 182
BsuRI GGCC 2 cut(s) 146, 187
BtsCI GGATG 3 cut(s) 10, 109, 492
BtsI GCAGTG 1 cut(s) 77
BtsIMutI CAGTG 1 cut(s) 77
Csp6I GTAC 3 cut(s) 33, 131, 236
CviAII CATG 5 cut(s) 239, 359, 442, 515, 577
CviJI RGCY 6 cut(s) 88, 127, 146, 187, 312, 400
CviKI_1 RGCY 6 cut(s) 88, 127, 146, 187, 312, 400
CviQI GTAC 3 cut(s) 33, 131, 236
DdeI CTNAG 2 cut(s) 182, 570
DpnI GATC 2 cut(s) 25, 171
DpnII GATC 2 cut(s) 23, 169
DraI TTTAAA 1 cut(s) 432
EaeI YGGCCR 1 cut(s) 144
Eco130I CCWWGG 1 cut(s) 549
Eco57I CTGAAG 1 cut(s) 422
Eco81I CCTNAGG 1 cut(s) 182
EcoRII CCWGG 1 cut(s) 187
EcoT14I CCWWGG 1 cut(s) 549
EcoT22I ATGCAT 1 cut(s) 292
ErhI CCWWGG 1 cut(s) 549
FaeI CATG 5 cut(s) 242, 362, 445, 518, 580
FatI CATG 5 cut(s) 238, 358, 441, 514, 576
FauI CCCGC 1 cut(s) 355
Fnu4HI GCNGC 1 cut(s) 461
FokI GGATG 3 cut(s) 17, 116, 499
Fsp4HI GCNGC 1 cut(s) 461
FspBI CTAG 1 cut(s) 302
GluI GCNGC 1 cut(s) 461
HaeIII GGCC 2 cut(s) 146, 187
Hin1II CATG 5 cut(s) 242, 362, 445, 518, 580
HindIII AAGCTT 1 cut(s) 310
HinfI GANTC 2 cut(s) 38, 511
Hpy166II GTNNAC 2 cut(s) 75, 424
Hpy8I GTNNAC 2 cut(s) 75, 424
HpyAV CCTTC 2 cut(s) 199, 397
HpyCH4III ACNGT 1 cut(s) 17
HpyCH4IV ACGT 2 cut(s) 269, 426
HpyCH4V TGCA 8 cut(s) 70, 290, 368, 386, 395, 424, 463, 474
HpyF10VI GCNNNNNNNGC 2 cut(s) 184, 392
HpyF3I CTNAG 2 cut(s) 182, 570
HpySE526I ACGT 2 cut(s) 269, 426
Hsp92II CATG 5 cut(s) 242, 362, 445, 518, 580
Kzo9I GATC 2 cut(s) 23, 169
LmnI GCTCC 1 cut(s) 183
Lsp1109I GCAGC 1 cut(s) 447
LweI GCATC 2 cut(s) 277, 395
MaeI CTAG 1 cut(s) 302
MaeII ACGT 2 cut(s) 269, 426
MaeIII GTNAC 1 cut(s) 517
MalI GATC 2 cut(s) 25, 171
MboI GATC 2 cut(s) 23, 169
MboII GAAGA 2 cut(s) 385, 571
MfeI CAATTG 1 cut(s) 323
MflI RGATCY 2 cut(s) 23, 169
MhlI GDGCHC 1 cut(s) 426
MlsI TGGCCA 1 cut(s) 146
MluCI AATT 6 cut(s) 9, 151, 195, 212, 323, 529
MluNI TGGCCA 1 cut(s) 146
MlyI GAGTC 1 cut(s) 32
MmeI TCCRAC 1 cut(s) 197
MnlI CCTC 6 cut(s) 58, 106, 191, 492, 498, 501
Mox20I TGGCCA 1 cut(s) 146
Mph1103I ATGCAT 1 cut(s) 292
MscI TGGCCA 1 cut(s) 146
MseI TTAA 4 cut(s) 140, 210, 308, 431
MslI CAYNNNNRTG 1 cut(s) 363
Msp20I TGGCCA 1 cut(s) 146
MspR9I CCNGG 1 cut(s) 189
MunI CAATTG 1 cut(s) 323
Mva1269I GAATGC 1 cut(s) 290
MvaI CCWGG 1 cut(s) 189
MwoI GCNNNNNNNGC 2 cut(s) 184, 392
NdeII GATC 2 cut(s) 23, 169
NlaIII CATG 5 cut(s) 242, 362, 445, 518, 580
NlaIV GGNNCC 1 cut(s) 171
NmuCI GTSAC 1 cut(s) 517
NsiI ATGCAT 1 cut(s) 292
NspI RCATGY 2 cut(s) 445, 580
PciI ACATGT 2 cut(s) 441, 576
PctI GAATGC 1 cut(s) 290
PfeI GAWTC 1 cut(s) 511
Pfl23II CGTACG 1 cut(s) 32
PflMI CCANNNNNTGG 1 cut(s) 254
PkrI GCNGC 1 cut(s) 462
PleI GAGTC 1 cut(s) 32
PpsI GAGTC 1 cut(s) 32
PscI ACATGT 2 cut(s) 441, 576
Psp6I CCWGG 1 cut(s) 187
PspGI CCWGG 1 cut(s) 187
PspLI CGTACG 1 cut(s) 32
PspN4I GGNNCC 1 cut(s) 171
PstI CTGCAG 1 cut(s) 465
PsuI RGATCY 2 cut(s) 23, 169
RsaI GTAC 3 cut(s) 34, 132, 237
RsaNI GTAC 3 cut(s) 33, 131, 236
RseI CAYNNNNRTG 1 cut(s) 363
SaqAI TTAA 4 cut(s) 140, 210, 308, 431
SatI GCNGC 1 cut(s) 461
Sau3AI GATC 2 cut(s) 23, 169
SchI GAGTC 1 cut(s) 32
ScrFI CCNGG 1 cut(s) 189
SduI GDGCHC 1 cut(s) 426
SfaNI GCATC 2 cut(s) 277, 395
SfcI CTRYAG 1 cut(s) 461
SmiMI CAYNNNNRTG 1 cut(s) 363
Sse9I AATT 6 cut(s) 9, 151, 195, 212, 323, 529
SsiI CCGC 1 cut(s) 362
SspMI CTAG 1 cut(s) 302
StyD4I CCNGG 1 cut(s) 187
StyI CCWWGG 1 cut(s) 549
TaaI ACNGT 1 cut(s) 17
TaiI ACGT 2 cut(s) 272, 429
TasI AATT 6 cut(s) 9, 151, 195, 212, 323, 529
TfiI GAWTC 1 cut(s) 511
Tru1I TTAA 4 cut(s) 140, 210, 308, 431
Tru9I TTAA 4 cut(s) 140, 210, 308, 431
TscAI CASTG 1 cut(s) 77
TseFI GTSAC 1 cut(s) 517
TseI GCWGC 1 cut(s) 460
Tsp45I GTSAC 1 cut(s) 517
TspDTI ATGAA 8 cut(s) 21, 243, 255, 283, 343, 347, 503, 572
TspGWI ACGGA 2 cut(s) 50, 578
TspRI CASTG 1 cut(s) 77
Van91I CCANNNNNTGG 1 cut(s) 254
VneI GTGCAC 1 cut(s) 422
XapI RAATTY 2 cut(s) 212, 529
XceI RCATGY 2 cut(s) 445, 580
XspI CTAG 1 cut(s) 302
Zsp2I ATGCAT 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.