Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

18336216 .. 18338599

Gene Structure 2384 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGAGTCGATCTGTTATCAATTACTATATTCATGTTTCTATTGAGTACTCAGTGAGTAAAATTTTGAATGATACTCCTTTCTTAAATAATGTCGACTTTTTAATTGCTGTGTTATCTGAATTGATTTGGGTGTATAATACAGTAAGGATTGTATCCTGTTATAAAAACAAATCTGTTATTTTCATGGAGCTCCCCTTACATTCAAATTCCATACATTATGAAATTGGGCGAGGAAGCTGTGAAGATCGCACTAAAATGCTTCATCTAATTGTAGATCTTGTGGAGGTAAGTATTTATGCTGATAATCAAGAATGGAGAAGTGTTGCAAAGGACATACAACTAATTGATTCCATAGCTGAAAAACAAGCTCAAATATTCTCTGAAGAATGCAAATTGTTCCCTGCAGATGTTCAGATTCAGTCCATATATCCATTGCCTGATGTTTCTGAATTGGAGAAAAAGCTTTCAGAACAATCAAAGATATTCTCAAGTCTTCAACAAAAGGTTGACGATTTGGCTTCAAAGTATGCCTACAACTCAGATGAGGATTATGAAGAGGTGGAATCAAGATTGCGTGAACATTTGGAGTCTTTTCTAGAAACTGCAAAATCATTCAATACAATTTACACTAAGAATTATATATCTGCTAAAAAGGTGAGGCACCGGCGGTACATGTGCACCATGATGAACCATATGCTTTGTGGTGGATTCCATTTTCACATACCTGGCTTGGTTGGCTTAGGAGAAAGTTTACGCTTCAGTTTTAGCTCCCGGATAATAGAAAAGTTCACTATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0008017 GO:0008092 GO:0009524 GO:0015630 GO:0015631 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0051011 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_NMP1

Protein Analysis

266

Amino Acids

30.8

Weight (kDa)

5.87

Isoelectric Point (pI)

53.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plant_NMP1	PF06694	76 - 212	2.2e-68	Plant nuclear matrix protein 1 (NMP1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Image

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	162
AccB1I	GGYRCC	1 cut(s)	660
AccI	GTMKAC	1 cut(s)	93
AciI	CCGC	1 cut(s)	667
AcsI	RAATTY	2 cut(s)	60, 205
AcuI	CTGAAG	2 cut(s)	402, 742
AfaI	GTAC	2 cut(s)	47, 671
AflIII	ACRYGT	1 cut(s)	672
AgsI	TTSAA	5 cut(s)	67, 204, 497, 522, 616
AjnI	CCWGG	1 cut(s)	724
AluBI	AGCT	6 cut(s)	190, 237, 356, 368, 463, 768
AluI	AGCT	6 cut(s)	190, 237, 356, 368, 463, 768
Alw21I	GWGCWC	2 cut(s)	192, 680
Alw44I	GTGCAC	1 cut(s)	676
ApaLI	GTGCAC	1 cut(s)	676
ApoI	RAATTY	2 cut(s)	60, 205
AsuC2I	CCSGG	1 cut(s)	772
AsuHPI	GGTGA	1 cut(s)	667
BaeGI	GKGCMC	1 cut(s)	680
BanI	GGYRCC	1 cut(s)	660
BanII	GRGCYC	1 cut(s)	192
BbsI	GAAGAC	1 cut(s)	485
Bbv12I	GWGCWC	2 cut(s)	192, 680
BciT130I	CCWGG	1 cut(s)	726
BciVI	GTATCC	1 cut(s)	163
BcnI	CCSGG	1 cut(s)	772
BfaI	CTAG	1 cut(s)	596
BfmI	CTRYAG	1 cut(s)	402
BfuI	GTATCC	1 cut(s)	163
BglII	AGATCT	1 cut(s)	274
BmcAI	AGTACT	1 cut(s)	47
Bme1390I	CCNGG	2 cut(s)	726, 772
BmiI	GGNNCC	1 cut(s)	662
BmrFI	CCNGG	2 cut(s)	726, 772
BpiI	GAAGAC	1 cut(s)	485
Bpu10I	CCTNAGC	1 cut(s)	739
BpuEI	CTTGAG	1 cut(s)	472
BpuMI	CCSGG	1 cut(s)	772
Bse118I	RCCGGY	1 cut(s)	663
Bse3DI	GCAATG	1 cut(s)	431
BseBI	CCWGG	1 cut(s)	726
BseMI	GCAATG	1 cut(s)	431
BseMII	CTCAG	2 cut(s)	63, 552
BseSI	GKGCMC	1 cut(s)	680
BshNI	GGYRCC	1 cut(s)	660
BsiHKAI	GWGCWC	2 cut(s)	192, 680
BsiSI	CCGG	2 cut(s)	664, 772
BsmI	GAATGC	1 cut(s)	392
Bsp1286I	GDGCHC	2 cut(s)	192, 680
Bsp143I	GATC	3 cut(s)	8, 244, 274
BspACI	CCGC	1 cut(s)	667
BspCNI	CTCAG	2 cut(s)	62, 551
BspLI	GGNNCC	1 cut(s)	662
BspMAI	CTGCAG	1 cut(s)	406
BspT107I	GGYRCC	1 cut(s)	660
BsrDI	GCAATG	1 cut(s)	431
BsrFI	RCCGGY	1 cut(s)	663
BssAI	RCCGGY	1 cut(s)	663
BssMI	GATC	3 cut(s)	8, 244, 274
Bst2UI	CCWGG	1 cut(s)	726
Bst4CI	ACNGT	1 cut(s)	142
Bst6I	CTCTTC	1 cut(s)	549
BstDEI	CTNAG	4 cut(s)	49, 538, 630, 739
BstKTI	GATC	3 cut(s)	11, 247, 277
BstMBI	GATC	3 cut(s)	8, 244, 274
BstMWI	GCNNNNNNNGC	1 cut(s)	735
BstNI	CCWGG	1 cut(s)	726
BstNSI	RCATGY	1 cut(s)	676
BstSCI	CCNGG	2 cut(s)	724, 770
BstSFI	CTRYAG	1 cut(s)	402
BstSLI	GKGCMC	1 cut(s)	680
BstV2I	GAAGAC	1 cut(s)	485
BstX2I	RGATCY	1 cut(s)	274
BstYI	RGATCY	1 cut(s)	274
BsuI	GTATCC	1 cut(s)	163
BtsIMutI	CAGTG	1 cut(s)	57
Cfr10I	RCCGGY	1 cut(s)	663
Csp6I	GTAC	2 cut(s)	46, 670
CviAII	CATG	4 cut(s)	32, 184, 673, 682
CviJI	RGCY	9 cut(s)	190, 237, 356, 368, 463, 518, 729, 738, 768
CviKI_1	RGCY	9 cut(s)	190, 237, 356, 368, 463, 518, 729, 738, 768
CviQI	GTAC	2 cut(s)	46, 670
DdeI	CTNAG	4 cut(s)	49, 538, 630, 739
DpnI	GATC	3 cut(s)	10, 246, 276
DpnII	GATC	3 cut(s)	8, 244, 274
Eam1104I	CTCTTC	1 cut(s)	549
EarI	CTCTTC	1 cut(s)	549
Ecl136II	GAGCTC	1 cut(s)	190
Eco24I	GRGCYC	1 cut(s)	192
Eco53kI	GAGCTC	1 cut(s)	190
Eco57I	CTGAAG	2 cut(s)	402, 742
EcoICRI	GAGCTC	1 cut(s)	190
EcoRII	CCWGG	1 cut(s)	724
EcoT38I	GRGCYC	1 cut(s)	192
FaeI	CATG	4 cut(s)	35, 187, 676, 685
FatI	CATG	4 cut(s)	31, 183, 672, 681
FauNDI	CATATG	1 cut(s)	693
FblI	GTMKAC	1 cut(s)	93
FriOI	GRGCYC	1 cut(s)	192
FspBI	CTAG	1 cut(s)	596
HapII	CCGG	2 cut(s)	664, 772
Hin1II	CATG	4 cut(s)	35, 187, 676, 685
HincII	GTYRAC	2 cut(s)	94, 508
HindII	GTYRAC	2 cut(s)	94, 508
HindIII	AAGCTT	1 cut(s)	461
HinfI	GANTC	6 cut(s)	4, 347, 415, 563, 587, 708
HpaII	CCGG	2 cut(s)	664, 772
HphI	GGTGA	1 cut(s)	667
Hpy166II	GTNNAC	6 cut(s)	94, 508, 578, 678, 752, 789
Hpy188I	TCNGA	6 cut(s)	118, 382, 414, 448, 469, 541
Hpy188III	TCNNGA	3 cut(s)	308, 567, 596
Hpy8I	GTNNAC	6 cut(s)	94, 508, 578, 678, 752, 789
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4V	TGCA	5 cut(s)	326, 390, 404, 605, 678
HpyF10VI	GCNNNNNNNGC	1 cut(s)	735
HpyF3I	CTNAG	4 cut(s)	49, 538, 630, 739
Hsp92II	CATG	4 cut(s)	35, 187, 676, 685
Kzo9I	GATC	3 cut(s)	8, 244, 274
LmnI	GCTCC	3 cut(s)	187, 195, 773
LpnPI	CCDG	7 cut(s)	169, 414, 450, 677, 711, 738, 785
MaeI	CTAG	1 cut(s)	596
MalI	GATC	3 cut(s)	10, 246, 276
MboI	GATC	3 cut(s)	8, 244, 274
MboII	GAAGA	4 cut(s)	254, 395, 485, 566
MflI	RGATCY	1 cut(s)	274
MhlI	GDGCHC	2 cut(s)	192, 680
MlyI	GAGTC	2 cut(s)	13, 596
MnlI	CCTC	5 cut(s)	224, 277, 538, 550, 651
MseI	TTAA	2 cut(s)	83, 101
MslI	CAYNNNNRTG	2 cut(s)	254, 683
MspI	CCGG	2 cut(s)	664, 772
MspR9I	CCNGG	2 cut(s)	726, 772
Mva1269I	GAATGC	1 cut(s)	392
MvaI	CCWGG	1 cut(s)	726
MwoI	GCNNNNNNNGC	1 cut(s)	735
NciI	CCSGG	1 cut(s)	772
NdeI	CATATG	1 cut(s)	693
NdeII	GATC	3 cut(s)	8, 244, 274
NlaIII	CATG	4 cut(s)	35, 187, 676, 685
NlaIV	GGNNCC	1 cut(s)	662
NspI	RCATGY	1 cut(s)	676
PciI	ACATGT	1 cut(s)	672
PctI	GAATGC	1 cut(s)	392
PfeI	GAWTC	4 cut(s)	347, 415, 563, 708
PfoI	TCCNGGA	1 cut(s)	770
PleI	GAGTC	2 cut(s)	12, 595
PpsI	GAGTC	2 cut(s)	12, 595
PscI	ACATGT	1 cut(s)	672
PsiI	TTATAA	1 cut(s)	162
Psp124BI	GAGCTC	1 cut(s)	192
Psp6I	CCWGG	1 cut(s)	724
PspGI	CCWGG	1 cut(s)	724
PspN4I	GGNNCC	1 cut(s)	662
PstI	CTGCAG	1 cut(s)	406
PsuI	RGATCY	1 cut(s)	274
RsaI	GTAC	2 cut(s)	47, 671
RsaNI	GTAC	2 cut(s)	46, 670
RseI	CAYNNNNRTG	2 cut(s)	254, 683
SacI	GAGCTC	1 cut(s)	192
SalI	GTCGAC	1 cut(s)	92
SaqAI	TTAA	2 cut(s)	83, 101
Sau3AI	GATC	3 cut(s)	8, 244, 274
ScaI	AGTACT	1 cut(s)	47
SchI	GAGTC	2 cut(s)	13, 596
ScrFI	CCNGG	2 cut(s)	726, 772
SduI	GDGCHC	2 cut(s)	192, 680
SfcI	CTRYAG	1 cut(s)	402
SgrAI	CRCCGGYG	1 cut(s)	663
SmiMI	CAYNNNNRTG	2 cut(s)	254, 683
SmlI	CTYRAG	1 cut(s)	487
SmoI	CTYRAG	1 cut(s)	487
SsiI	CCGC	1 cut(s)	667
SspI	AATATT	1 cut(s)	375
SspMI	CTAG	1 cut(s)	596
SstI	GAGCTC	1 cut(s)	192
StyD4I	CCNGG	2 cut(s)	724, 770
TaaI	ACNGT	1 cut(s)	142
TaqI	TCGA	2 cut(s)	7, 93
TatI	WGTACW	1 cut(s)	45
TfiI	GAWTC	4 cut(s)	347, 415, 563, 708
Tru1I	TTAA	2 cut(s)	83, 101
Tru9I	TTAA	2 cut(s)	83, 101
TscAI	CASTG	1 cut(s)	57
TspDTI	ATGAA	6 cut(s)	20, 172, 234, 251, 567, 701
TspRI	CASTG	1 cut(s)	57
VneI	GTGCAC	1 cut(s)	676
XapI	RAATTY	2 cut(s)	60, 205
XbaI	TCTAGA	1 cut(s)	595
XceI	RCATGY	1 cut(s)	676
XcmI	CCANNNNNNNNNTGG	1 cut(s)	698
XmiI	GTMKAC	1 cut(s)	93
XspI	CTAG	1 cut(s)	596
ZrmI	AGTACT	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.