pycom02g20270

auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
N/A
Physical Location & Seq
Reverse (-)
18412782 .. 18413260
479 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 408 bp
ATGCTTAAGCTTAACAATCGTTTAAGGACAGTGAGACAGAGCCACCAAAGCGCGAAATACTTCCCAACACCAAAAGATCCTCAATCTGCATTCCAATTGACCCAAACTGGGTGGAAAAATATACAGAAGGAAAAAGCTTCAAAATCCATTCAATTTCATGGAAAAAATTTGAACCATTTCTCGATTTATGCGTGTCATCCTTGCGCAGGAGCCATGCTAATCTTCTCTGTATCGTTCCAATTTTATCGAACGTCCCGAAGGGACATTCTTCTTTGCGCAGTTATGACTAATAACCAGCGCTGTACCCGGTGTGAGACAATTGTATCCCCCCTTCTCAGCAGTCGAGTCAAGTTTCCTTCTTTTTGTAATAAAACTGATCGCTTCCCAATCTCCATACAAATAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

136

Amino Acids

15.6

Weight (kDa)

10.23

Isoelectric Point (pI)

49.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 205, 277
AccII CGCG 1 cut(s) 53
AclWI GGATC 1 cut(s) 71
AcsI RAATTY 1 cut(s) 166
AfaI GTAC 1 cut(s) 304
AfeI AGCGCT 1 cut(s) 299
AfiI CCNNNNNNNGG 2 cut(s) 108, 206
AflII CTTAAG 1 cut(s) 5
AgsI TTSAA 3 cut(s) 141, 152, 172
AluBI AGCT 2 cut(s) 10, 137
AluI AGCT 2 cut(s) 10, 137
Alw26I GTCTC 2 cut(s) 28, 308
AlwI GGATC 1 cut(s) 71
Aor51HI AGCGCT 1 cut(s) 299
ApoI RAATTY 1 cut(s) 166
Asp700I GAANNNNTTC 2 cut(s) 59, 176
AspLEI GCGC 4 cut(s) 53, 206, 278, 300
AsuC2I CCSGG 1 cut(s) 307
BaeI ACNNNNGTAYC 2 cut(s) 306, 339
BarI GAAGNNNNNNTAC 2 cut(s) 315, 347
BciVI GTATCC 1 cut(s) 334
BcnI CCSGG 1 cut(s) 307
BcoDI GTCTC 2 cut(s) 28, 308
BfoI RGCGCY 1 cut(s) 301
BfrI CTTAAG 1 cut(s) 5
BfuI GTATCC 1 cut(s) 334
Bme1390I CCNGG 1 cut(s) 307
BmiI GGNNCC 1 cut(s) 211
BmrFI CCNGG 1 cut(s) 307
BmrI ACTGGG 1 cut(s) 117
BmuI ACTGGG 1 cut(s) 117
BpuMI CCSGG 1 cut(s) 307
Bsc4I CCNNNNNNNGG 2 cut(s) 108, 206
Bse1I ACTGG 1 cut(s) 112
BseGI GGATG 1 cut(s) 196
BseLI CCNNNNNNNGG 2 cut(s) 108, 206
BseMII CTCAG 1 cut(s) 349
BseNI ACTGG 1 cut(s) 112
Bsh1236I CGCG 1 cut(s) 53
BsiSI CCGG 1 cut(s) 307
BslFI GGGAC 2 cut(s) 238, 275
BslI CCNNNNNNNGG 2 cut(s) 108, 206
BsmAI GTCTC 2 cut(s) 28, 308
BsmFI GGGAC 2 cut(s) 238, 275
BsmI GAATGC 1 cut(s) 89
Bsp143I GATC 2 cut(s) 76, 376
BspCNI CTCAG 1 cut(s) 348
BspFNI CGCG 1 cut(s) 53
BspLI GGNNCC 1 cut(s) 211
BspPI GGATC 1 cut(s) 71
BspTI CTTAAG 1 cut(s) 5
BsrI ACTGG 1 cut(s) 112
BssMI GATC 2 cut(s) 76, 376
Bst4CI ACNGT 1 cut(s) 31
BstAFI CTTAAG 1 cut(s) 5
BstDEI CTNAG 1 cut(s) 335
BstENI CCTNNNNNAGG 1 cut(s) 204
BstF5I GGATG 1 cut(s) 196
BstFNI CGCG 1 cut(s) 53
BstH2I RGCGCY 1 cut(s) 301
BstHHI GCGC 4 cut(s) 53, 206, 278, 300
BstKTI GATC 2 cut(s) 79, 379
BstMAI GTCTC 2 cut(s) 28, 308
BstMBI GATC 2 cut(s) 76, 376
BstMWI GCNNNNNNNGC 1 cut(s) 48
BstSCI CCNGG 1 cut(s) 305
BstUI CGCG 1 cut(s) 53
BstX2I RGATCY 1 cut(s) 76
BstYI RGATCY 1 cut(s) 76
BsuI GTATCC 1 cut(s) 334
BtsCI GGATG 1 cut(s) 196
BtsIMutI CAGTG 1 cut(s) 36
CfoI GCGC 4 cut(s) 53, 206, 278, 300
Csp6I GTAC 1 cut(s) 303
CspCI CAANNNNNGTGG 2 cut(s) 92, 127
CviAII CATG 2 cut(s) 158, 214
CviJI RGCY 4 cut(s) 10, 42, 137, 212
CviKI_1 RGCY 4 cut(s) 10, 42, 137, 212
CviQI GTAC 1 cut(s) 303
DdeI CTNAG 1 cut(s) 335
DpnI GATC 2 cut(s) 78, 378
DpnII GATC 2 cut(s) 76, 376
Eco47III AGCGCT 1 cut(s) 299
EcoNI CCTNNNNNAGG 1 cut(s) 204
FaeI CATG 2 cut(s) 161, 217
FaiI YATR 6 cut(s) 122, 159, 189, 215, 284, 395
FaqI GGGAC 2 cut(s) 238, 275
FatI CATG 2 cut(s) 157, 213
FokI GGATG 1 cut(s) 183
FspI TGCGCA 2 cut(s) 205, 277
GlaI GCGC 4 cut(s) 52, 205, 277, 299
HaeII RGCGCY 1 cut(s) 301
HapII CCGG 1 cut(s) 307
HhaI GCGC 4 cut(s) 53, 206, 278, 300
Hin1II CATG 2 cut(s) 161, 217
Hin6I GCGC 4 cut(s) 51, 204, 276, 298
HinP1I GCGC 4 cut(s) 51, 204, 276, 298
HindIII AAGCTT 2 cut(s) 8, 135
HinfI GANTC 1 cut(s) 345
HpaII CCGG 1 cut(s) 307
Hpy188III TCNNGA 2 cut(s) 181, 255
HpyAV CCTTC 4 cut(s) 121, 252, 341, 366
HpyCH4III ACNGT 1 cut(s) 31
HpyCH4IV ACGT 1 cut(s) 251
HpyCH4V TGCA 1 cut(s) 89
HpyF10VI GCNNNNNNNGC 1 cut(s) 48
HpyF3I CTNAG 1 cut(s) 335
HpySE526I ACGT 1 cut(s) 251
Hsp92II CATG 2 cut(s) 161, 217
HspAI GCGC 4 cut(s) 51, 204, 276, 298
Kzo9I GATC 2 cut(s) 76, 376
LmnI GCTCC 1 cut(s) 209
LpnPI CCDG 4 cut(s) 93, 192, 308, 320
MaeII ACGT 1 cut(s) 251
MalI GATC 2 cut(s) 78, 378
MboI GATC 2 cut(s) 76, 376
MboII GAAGA 2 cut(s) 214, 260
MfeI CAATTG 2 cut(s) 95, 318
MflI RGATCY 1 cut(s) 76
MluCI AATT 6 cut(s) 95, 152, 166, 239, 318, 403
MlyI GAGTC 1 cut(s) 354
MnlI CCTC 1 cut(s) 90
MroXI GAANNNNTTC 2 cut(s) 59, 176
MseI TTAA 4 cut(s) 6, 12, 23, 406
MspCI CTTAAG 1 cut(s) 5
MspI CCGG 1 cut(s) 307
MspR9I CCNGG 1 cut(s) 307
MunI CAATTG 2 cut(s) 95, 318
Mva1269I GAATGC 1 cut(s) 89
MvnI CGCG 1 cut(s) 53
MwoI GCNNNNNNNGC 1 cut(s) 48
NciI CCSGG 1 cut(s) 307
NdeII GATC 2 cut(s) 76, 376
NlaIII CATG 2 cut(s) 161, 217
NlaIV GGNNCC 1 cut(s) 211
NsbI TGCGCA 2 cut(s) 205, 277
PcsI WCGNNNNNNNCGW 2 cut(s) 188, 253
PctI GAATGC 1 cut(s) 89
PdmI GAANNNNTTC 2 cut(s) 59, 176
PleI GAGTC 1 cut(s) 353
PpsI GAGTC 1 cut(s) 353
PspN4I GGNNCC 1 cut(s) 211
PsuI RGATCY 1 cut(s) 76
RsaI GTAC 1 cut(s) 304
RsaNI GTAC 1 cut(s) 303
SaqAI TTAA 4 cut(s) 6, 12, 23, 406
Sau3AI GATC 2 cut(s) 76, 376
SchI GAGTC 1 cut(s) 354
ScrFI CCNGG 1 cut(s) 307
SetI ASST 3 cut(s) 12, 139, 254
SmlI CTYRAG 1 cut(s) 5
SmoI CTYRAG 1 cut(s) 5
Sse9I AATT 6 cut(s) 95, 152, 166, 239, 318, 403
StyD4I CCNGG 1 cut(s) 305
TaaI ACNGT 1 cut(s) 31
TaiI ACGT 1 cut(s) 254
TaqI TCGA 3 cut(s) 182, 247, 343
TasI AATT 6 cut(s) 95, 152, 166, 239, 318, 403
Tru1I TTAA 4 cut(s) 6, 12, 23, 406
Tru9I TTAA 4 cut(s) 6, 12, 23, 406
TscAI CASTG 1 cut(s) 36
TspDTI ATGAA 1 cut(s) 146
TspRI CASTG 1 cut(s) 36
Vha464I CTTAAG 1 cut(s) 5
XagI CCTNNNNNAGG 1 cut(s) 204
XapI RAATTY 1 cut(s) 166
XmnI GAANNNNTTC 2 cut(s) 59, 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.