Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

18943899 .. 18944480

Gene Structure 582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGCGTGGTGGATTTGACCAAGCATGGAAGGGAGGGAGGCTGGTGCTACTTTGGAGATTGCAGATGTTTCTTCATGATGGGGCAGGAGCTGCATGGGTAAATAGATGTGTGAATGCAGCATGCCTTGGCTTTATGATGGCACCCAAGTATCATCCAGCAATGCATATTGTCCGCCCCGTAGGAAGAAACCTGAAAGTAAAGACTGTGTTCAACATATTAGTGTTGAATACAGCAAGAGGACCTTTCGCTGTTGTTGGTGTATACAAGGATGGCTTGATCTTAAATGCTGCAGCAGCTCTCTTGGTCAGCGGTCGGGTGAACATACCTGGCGGAAGGAATTTCTTTTGCTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004048 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0016053 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0019752 GO:0031967 GO:0031975 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Glycos_trans_3N Glycos_transf_3

Protein Analysis

118

Amino Acids

12.74

Weight (kDa)

10.95

Isoelectric Point (pI)

43.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glycos_transf_3	PF00591	33 - 101	6.8e-13	Glycosyl transferase family, a/b domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	139
AccI	GTMKAC	1 cut(s)	261
AciI	CCGC	3 cut(s)	172, 309, 330
AcsI	RAATTY	1 cut(s)	337
AgsI	TTSAA	2 cut(s)	211, 226
AjnI	CCWGG	1 cut(s)	325
AluBI	AGCT	2 cut(s)	89, 296
AluI	AGCT	2 cut(s)	89, 296
AlwNI	CAGNNNCTG	1 cut(s)	89
ApeKI	GCWGC	5 cut(s)	89, 116, 287, 290, 293
ApoI	RAATTY	1 cut(s)	337
AspS9I	GGNCC	1 cut(s)	239
AsuHPI	GGTGA	1 cut(s)	328
AvaII	GGWCC	1 cut(s)	239
BaeI	ACNNNNGTAYC	2 cut(s)	131, 164
BanI	GGYRCC	1 cut(s)	139
BauI	CACGAG	1 cut(s)	349
BbvI	GCAGC	5 cut(s)	76, 128, 274, 302, 305
BccI	CCATC	3 cut(s)	71, 130, 263
BciT130I	CCWGG	1 cut(s)	327
BfmI	CTRYAG	1 cut(s)	288
BisI	GCNGC	5 cut(s)	90, 117, 288, 291, 294
BlsI	GCNGC	5 cut(s)	91, 118, 289, 292, 295
Bme1390I	CCNGG	1 cut(s)	327
Bme18I	GGWCC	1 cut(s)	239
BmgT120I	GGNCC	1 cut(s)	239
BmiI	GGNNCC	1 cut(s)	141
BmrFI	CCNGG	1 cut(s)	327
BsaJI	CCNNGG	1 cut(s)	124
Bse3DI	GCAATG	1 cut(s)	165
BseBI	CCWGG	1 cut(s)	327
BseDI	CCNNGG	1 cut(s)	124
BseGI	GGATG	2 cut(s)	151, 274
BseMI	GCAATG	1 cut(s)	165
BseXI	GCAGC	5 cut(s)	76, 128, 274, 302, 305
Bsh1285I	CGRYCG	1 cut(s)	313
BshNI	GGYRCC	1 cut(s)	139
BsiEI	CGRYCG	1 cut(s)	313
BsmI	GAATGC	1 cut(s)	118
Bsp143I	GATC	1 cut(s)	276
BspACI	CCGC	3 cut(s)	172, 309, 330
BspHI	TCATGA	1 cut(s)	73
BspLI	GGNNCC	1 cut(s)	141
BspMAI	CTGCAG	1 cut(s)	292
BspT107I	GGYRCC	1 cut(s)	139
BsrDI	GCAATG	1 cut(s)	165
BssECI	CCNNGG	1 cut(s)	124
BssMI	GATC	1 cut(s)	276
BssNAI	GTATAC	1 cut(s)	262
BssSI	CACGAG	1 cut(s)	349
BssT1I	CCWWGG	1 cut(s)	124
Bst1107I	GTATAC	1 cut(s)	262
Bst2BI	CACGAG	1 cut(s)	349
Bst2UI	CCWGG	1 cut(s)	327
Bst4CI	ACNGT	1 cut(s)	205
BstAPI	GCANNNNNTGC	1 cut(s)	89
BstC8I	GCNNGC	1 cut(s)	121
BstF5I	GGATG	2 cut(s)	151, 274
BstKTI	GATC	1 cut(s)	279
BstMBI	GATC	1 cut(s)	276
BstMCI	CGRYCG	1 cut(s)	313
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 293
BstNI	CCWGG	1 cut(s)	327
BstNSI	RCATGY	1 cut(s)	123
BstSCI	CCNGG	1 cut(s)	325
BstSFI	CTRYAG	1 cut(s)	288
BstV1I	GCAGC	5 cut(s)	76, 128, 274, 302, 305
BstZ17I	GTATAC	1 cut(s)	262
BtsCI	GGATG	2 cut(s)	151, 274
Cac8I	GCNNGC	1 cut(s)	121
CaiI	CAGNNNCTG	1 cut(s)	89
CciI	TCATGA	1 cut(s)	73
Cfr13I	GGNCC	1 cut(s)	239
CviAII	CATG	4 cut(s)	24, 74, 93, 120
CviJI	RGCY	5 cut(s)	40, 89, 129, 273, 296
CviKI_1	RGCY	5 cut(s)	40, 89, 129, 273, 296
DpnI	GATC	1 cut(s)	278
DpnII	GATC	1 cut(s)	276
EciI	GGCGGA	2 cut(s)	161, 345
Eco130I	CCWWGG	1 cut(s)	124
Eco47I	GGWCC	1 cut(s)	239
EcoO109I	RGGNCCY	1 cut(s)	239
EcoRII	CCWGG	1 cut(s)	325
EcoT14I	CCWWGG	1 cut(s)	124
EcoT22I	ATGCAT	1 cut(s)	165
ErhI	CCWWGG	1 cut(s)	124
FaeI	CATG	4 cut(s)	27, 77, 96, 123
FaiI	YATR	9 cut(s)	25, 75, 94, 121, 134, 165, 215, 262, 323
FalI	AAGNNNNNCTT	4 cut(s)	226, 258, 257, 289
FatI	CATG	4 cut(s)	23, 73, 92, 119
FblI	GTMKAC	1 cut(s)	261
Fnu4HI	GCNGC	5 cut(s)	90, 117, 288, 291, 294
FokI	GGATG	2 cut(s)	138, 281
Fsp4HI	GCNGC	5 cut(s)	90, 117, 288, 291, 294
GluI	GCNGC	5 cut(s)	90, 117, 288, 291, 294
Hin1II	CATG	4 cut(s)	27, 77, 96, 123
HphI	GGTGA	1 cut(s)	328
Hpy166II	GTNNAC	2 cut(s)	262, 319
Hpy188III	TCNNGA	2 cut(s)	74, 351
Hpy8I	GTNNAC	2 cut(s)	262, 319
HpyAV	CCTTC	2 cut(s)	22, 327
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4V	TGCA	5 cut(s)	61, 92, 116, 163, 290
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 293
Hsp92II	CATG	4 cut(s)	27, 77, 96, 123
Kzo9I	GATC	1 cut(s)	276
LmnI	GCTCC	1 cut(s)	86
LpnPI	CCDG	6 cut(s)	26, 69, 168, 203, 312, 339
Lsp1109I	GCAGC	5 cut(s)	76, 128, 274, 302, 305
MalI	GATC	1 cut(s)	278
MboI	GATC	1 cut(s)	276
MboII	GAAGA	2 cut(s)	62, 195
MluCI	AATT	1 cut(s)	337
MnlI	CCTC	3 cut(s)	26, 30, 230
Mph1103I	ATGCAT	1 cut(s)	165
MseI	TTAA	1 cut(s)	281
MslI	CAYNNNNRTG	1 cut(s)	218
MspA1I	CMGCKG	1 cut(s)	309
MspR9I	CCNGG	1 cut(s)	327
Mva1269I	GAATGC	1 cut(s)	118
MvaI	CCWGG	1 cut(s)	327
MwoI	GCNNNNNNNGC	2 cut(s)	89, 293
NdeII	GATC	1 cut(s)	276
NlaIII	CATG	4 cut(s)	27, 77, 96, 123
NlaIV	GGNNCC	1 cut(s)	141
NsiI	ATGCAT	1 cut(s)	165
NspI	RCATGY	1 cut(s)	123
PaeI	GCATGC	1 cut(s)	123
PagI	TCATGA	1 cut(s)	73
PctI	GAATGC	1 cut(s)	118
PkrI	GCNGC	5 cut(s)	91, 118, 289, 292, 295
PpuMI	RGGWCCY	1 cut(s)	239
Psp5II	RGGWCCY	1 cut(s)	239
Psp6I	CCWGG	1 cut(s)	325
PspGI	CCWGG	1 cut(s)	325
PspN4I	GGNNCC	1 cut(s)	141
PspPI	GGNCC	1 cut(s)	239
PspPPI	RGGWCCY	1 cut(s)	239
PstI	CTGCAG	1 cut(s)	292
PstNI	CAGNNNCTG	1 cut(s)	89
RseI	CAYNNNNRTG	1 cut(s)	218
SaqAI	TTAA	1 cut(s)	281
SatI	GCNGC	5 cut(s)	90, 117, 288, 291, 294
Sau3AI	GATC	1 cut(s)	276
Sau96I	GGNCC	1 cut(s)	239
ScrFI	CCNGG	1 cut(s)	327
SetI	ASST	5 cut(s)	91, 192, 244, 298, 328
SfcI	CTRYAG	1 cut(s)	288
SinI	GGWCC	1 cut(s)	239
SmiMI	CAYNNNNRTG	1 cut(s)	218
SphI	GCATGC	1 cut(s)	123
Sse9I	AATT	1 cut(s)	337
SsiI	CCGC	3 cut(s)	172, 309, 330
StyD4I	CCNGG	1 cut(s)	325
StyI	CCWWGG	1 cut(s)	124
TaaI	ACNGT	1 cut(s)	205
TasI	AATT	1 cut(s)	337
Tru1I	TTAA	1 cut(s)	281
Tru9I	TTAA	1 cut(s)	281
TseI	GCWGC	5 cut(s)	89, 116, 287, 290, 293
TspDTI	ATGAA	1 cut(s)	62
VpaK11BI	GGWCC	1 cut(s)	239
XapI	RAATTY	1 cut(s)	337
XceI	RCATGY	1 cut(s)	123
XmiI	GTMKAC	1 cut(s)	261
Zsp2I	ATGCAT	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.