pycom02g20930

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
N/A
Physical Location & Seq
Forward (+)
18990622 .. 18990897
276 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 276 bp
ATGTGTGCTTCGAAGTTAGAAAATTTTGTTCTGAATTCTGAAATTTGGATTTATGGGTTTTGTTGCTTAACCAGAAGGAGGAAGTTCCATTTTTGGGTTCTAATTTGCGGCCTAGGATTGATCCGATTATGCGGCGGCAGAGGGTTTGGACTCCCCACTCTATCTAAATTTAGAAGTGGACACTTGCCCTCAAATGTCATACCGGTTCGGACAATTCTAGCTAATAGGGATGAGAGTGGGTCTACTTCTGATAATGACAGAACCACTGATTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.22

Weight (kDa)

9.3

Isoelectric Point (pI)

42.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 242
AciI CCGC 3 cut(s) 108, 132, 135
AclWI GGATC 1 cut(s) 115
AcsI RAATTY 4 cut(s) 22, 34, 42, 167
AfiI CCNNNNNNNGG 2 cut(s) 78, 94
AgeI ACCGGT 1 cut(s) 202
AluBI AGCT 1 cut(s) 221
AluI AGCT 1 cut(s) 221
AlwI GGATC 1 cut(s) 115
AoxI GGCC 1 cut(s) 109
ApoI RAATTY 4 cut(s) 22, 34, 42, 167
AsiGI ACCGGT 1 cut(s) 202
AspA2I CCTAGG 1 cut(s) 112
AsuII TTCGAA 1 cut(s) 11
AvrII CCTAGG 1 cut(s) 112
BfaI CTAG 2 cut(s) 113, 218
BisI GCNGC 3 cut(s) 109, 133, 136
BlnI CCTAGG 1 cut(s) 112
BlsI GCNGC 3 cut(s) 110, 134, 137
Bpu14I TTCGAA 1 cut(s) 11
BsaJI CCNNGG 1 cut(s) 112
BsaWI WCCGGW 1 cut(s) 202
Bsc4I CCNNNNNNNGG 2 cut(s) 78, 94
Bse118I RCCGGY 1 cut(s) 202
BseDI CCNNGG 1 cut(s) 112
BseGI GGATG 1 cut(s) 235
BseLI CCNNNNNNNGG 2 cut(s) 78, 94
BshFI GGCC 1 cut(s) 111
BshTI ACCGGT 1 cut(s) 202
BsiSI CCGG 1 cut(s) 203
BslI CCNNNNNNNGG 2 cut(s) 78, 94
BsnI GGCC 1 cut(s) 111
Bsp119I TTCGAA 1 cut(s) 11
Bsp143I GATC 1 cut(s) 120
BspACI CCGC 3 cut(s) 108, 132, 135
BspANI GGCC 1 cut(s) 111
BspPI GGATC 1 cut(s) 115
BspT104I TTCGAA 1 cut(s) 11
BsrFI RCCGGY 1 cut(s) 202
BssAI RCCGGY 1 cut(s) 202
BssECI CCNNGG 1 cut(s) 112
BssMI GATC 1 cut(s) 120
BssT1I CCWWGG 1 cut(s) 112
BstBI TTCGAA 1 cut(s) 11
BstF5I GGATG 1 cut(s) 235
BstKTI GATC 1 cut(s) 123
BstMBI GATC 1 cut(s) 120
BsuRI GGCC 1 cut(s) 111
BtsCI GGATG 1 cut(s) 235
BtsIMutI CAGTG 1 cut(s) 264
Cfr10I RCCGGY 1 cut(s) 202
CspAI ACCGGT 1 cut(s) 202
CviJI RGCY 2 cut(s) 111, 221
CviKI_1 RGCY 2 cut(s) 111, 221
DpnI GATC 1 cut(s) 122
DpnII GATC 1 cut(s) 120
Eco130I CCWWGG 1 cut(s) 112
EcoRI GAATTC 1 cut(s) 34
EcoT14I CCWWGG 1 cut(s) 112
ErhI CCWWGG 1 cut(s) 112
FaiI YATR 3 cut(s) 54, 130, 200
FblI GTMKAC 1 cut(s) 242
Fnu4HI GCNGC 3 cut(s) 109, 133, 136
FokI GGATG 1 cut(s) 242
Fsp4HI GCNGC 3 cut(s) 109, 133, 136
FspBI CTAG 2 cut(s) 113, 218
GluI GCNGC 3 cut(s) 109, 133, 136
HaeIII GGCC 1 cut(s) 111
HapII CCGG 1 cut(s) 203
HinfI GANTC 2 cut(s) 150, 269
HpaII CCGG 1 cut(s) 203
Hpy166II GTNNAC 2 cut(s) 179, 243
Hpy188I TCNGA 5 cut(s) 33, 40, 125, 210, 250
Hpy8I GTNNAC 2 cut(s) 179, 243
HpyAV CCTTC 1 cut(s) 69
Kzo9I GATC 1 cut(s) 120
LpnPI CCDG 2 cut(s) 85, 216
MaeI CTAG 2 cut(s) 113, 218
MalI GATC 1 cut(s) 122
MboI GATC 1 cut(s) 120
MluCI AATT 6 cut(s) 22, 34, 42, 102, 167, 213
MlyI GAGTC 1 cut(s) 144
MnlI CCTC 3 cut(s) 72, 134, 199
MseI TTAA 2 cut(s) 68, 274
MspI CCGG 1 cut(s) 203
NdeII GATC 1 cut(s) 120
NspV TTCGAA 1 cut(s) 11
PfeI GAWTC 1 cut(s) 269
PinAI ACCGGT 1 cut(s) 202
PkrI GCNGC 3 cut(s) 110, 134, 137
PleI GAGTC 1 cut(s) 144
PpsI GAGTC 1 cut(s) 144
SaqAI TTAA 2 cut(s) 68, 274
SatI GCNGC 3 cut(s) 109, 133, 136
Sau3AI GATC 1 cut(s) 120
SchI GAGTC 1 cut(s) 144
SetI ASST 1 cut(s) 223
SfuI TTCGAA 1 cut(s) 11
SgeI CNNG 5 cut(s) 84, 125, 196, 215, 230
Sse9I AATT 6 cut(s) 22, 34, 42, 102, 167, 213
SsiI CCGC 3 cut(s) 108, 132, 135
SspMI CTAG 2 cut(s) 113, 218
StyI CCWWGG 1 cut(s) 112
TaqI TCGA 1 cut(s) 11
TasI AATT 6 cut(s) 22, 34, 42, 102, 167, 213
TauI GCSGC 3 cut(s) 111, 135, 138
TfiI GAWTC 1 cut(s) 269
Tru1I TTAA 2 cut(s) 68, 274
Tru9I TTAA 2 cut(s) 68, 274
TscAI CASTG 1 cut(s) 271
TspRI CASTG 1 cut(s) 271
XapI RAATTY 4 cut(s) 22, 34, 42, 167
XmaJI CCTAGG 1 cut(s) 112
XmiI GTMKAC 1 cut(s) 242
XspI CTAG 2 cut(s) 113, 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.