pycom02g21550

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
N/A
Physical Location & Seq
Reverse (-)
19786007 .. 19787333
1327 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 681 bp
ATGATAGACATTCTTTTCCTTGAGTTTCTAAATGTACCCATGAGTTTTCTTGTAAATTCGGTGAAGGCCTTAGAATATGCAATACTATTCTGTGCAGCATTTTCAATCTTTTGTGTGATATCAGTGTCATGTACCAATTCATCCTCATTTGAATATAATTTTCTTCAACGCCTTTCAAATCATTCTCATCCCTCGAGTCCAATCTCTCGAGGCTTTTTCACCCCCAAATGTGCCTCTTTTTCATCTATTCTGCAGTCATATCCAAGCACCCATGTTCAAGCCACACTCATATGTGCCAAAACCCTTGGCTTGGAAATTAAAATTAGAAGTGGCAGACATAACTATGAAGGCGTCTCCTATGCATCCAAAGATTCAAAAGATTTCATCCTTCTCGACAATTTTAAGCTCCGGTCCATCAATGTCGATCTAGCAAATGAAGGTGCATGGAGGAGGTGTGGTTATGGTAACATGATGAGAAAATATGGGCTTTCAGCTGATAACATTGTTGATGCAAAAATAGTAAATGTAAAGGGTACAATTCTTGATAGAAAATCAATGGGATATCAATTGTCAATATTGGACGTGTATTTAAAGGGAGGGAGGGACGGAAGGACGACAGAAGGAGCTAGGGAGAGAAACAGGAGGAGAGAGGCCCAATTAGGGACAAAGCTACATGTGTGA
Functional Annotation

Protein Analysis

227

Amino Acids

25.36

Weight (kDa)

9.42

Isoelectric Point (pI)

41.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 55
AcyI GRCGYC 1 cut(s) 351
AfaI GTAC 3 cut(s) 36, 133, 535
AfiI CCNNNNNNNGG 2 cut(s) 310, 660
AflIII ACRYGT 2 cut(s) 582, 673
AgsI TTSAA 6 cut(s) 105, 152, 167, 177, 278, 375
AjiI CACGTC 1 cut(s) 583
AluBI AGCT 4 cut(s) 406, 494, 626, 670
AluI AGCT 4 cut(s) 406, 494, 626, 670
Alw26I GTCTC 1 cut(s) 358
Ama87I CYCGRG 2 cut(s) 193, 207
AoxI GGCC 2 cut(s) 66, 651
ApeKI GCWGC 1 cut(s) 95
ApoI RAATTY 1 cut(s) 55
AspS9I GGNCC 2 cut(s) 411, 652
AsuHPI GGTGA 2 cut(s) 73, 211
AvaI CYCGRG 2 cut(s) 193, 207
AvaII GGWCC 1 cut(s) 411
BbvI GCAGC 1 cut(s) 107
BccI CCATC 1 cut(s) 422
BcoDI GTCTC 1 cut(s) 358
BfaI CTAG 2 cut(s) 428, 627
BfmI CTRYAG 1 cut(s) 251
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
Bme18I GGWCC 1 cut(s) 411
BmeT110I CYCGRG 2 cut(s) 193, 207
BmgBI CACGTC 1 cut(s) 583
BmgT120I GGNCC 2 cut(s) 411, 652
BmsI GCATC 2 cut(s) 371, 499
BpuEI CTTGAG 1 cut(s) 41
BsaHI GRCGYC 1 cut(s) 351
BsaJI CCNNGG 1 cut(s) 304
BsaWI WCCGGW 1 cut(s) 408
BsaXI ACNNNNNCTCC 4 cut(s) 439, 442, 469, 472
Bsc4I CCNNNNNNNGG 2 cut(s) 310, 660
BseDI CCNNGG 1 cut(s) 304
BseGI GGATG 4 cut(s) 140, 187, 362, 384
BseLI CCNNNNNNNGG 2 cut(s) 310, 660
BseRI GAGGAG 2 cut(s) 463, 658
BseXI GCAGC 1 cut(s) 107
BsgI GTGCAG 1 cut(s) 114
BshFI GGCC 2 cut(s) 68, 653
BsiHKCI CYCGRG 2 cut(s) 193, 207
BsiSI CCGG 1 cut(s) 409
BslFI GGGAC 2 cut(s) 617, 676
BslI CCNNNNNNNGG 2 cut(s) 310, 660
BsmAI GTCTC 1 cut(s) 358
BsmBI CGTCTC 1 cut(s) 358
BsmFI GGGAC 2 cut(s) 617, 676
BsnI GGCC 2 cut(s) 68, 653
BsoBI CYCGRG 2 cut(s) 193, 207
Bsp143I GATC 1 cut(s) 424
BspANI GGCC 2 cut(s) 68, 653
BspMAI CTGCAG 1 cut(s) 255
BssECI CCNNGG 1 cut(s) 304
BssMI GATC 1 cut(s) 424
BssNI GRCGYC 1 cut(s) 351
BssT1I CCWWGG 1 cut(s) 304
BstACI GRCGYC 1 cut(s) 351
BstDEI CTNAG 1 cut(s) 70
BstF5I GGATG 4 cut(s) 140, 187, 362, 384
BstKTI GATC 1 cut(s) 427
BstMAI GTCTC 1 cut(s) 358
BstMBI GATC 1 cut(s) 424
BstNSI RCATGY 1 cut(s) 677
BstSFI CTRYAG 1 cut(s) 251
BstV1I GCAGC 1 cut(s) 107
BsuRI GGCC 2 cut(s) 68, 653
BtrI CACGTC 1 cut(s) 583
BtsCI GGATG 4 cut(s) 140, 187, 362, 384
BtsIMutI CAGTG 1 cut(s) 129
Cfr13I GGNCC 2 cut(s) 411, 652
CseI GACGC 1 cut(s) 340
Csp6I GTAC 3 cut(s) 35, 132, 534
CviAII CATG 6 cut(s) 40, 129, 272, 444, 469, 674
CviQI GTAC 3 cut(s) 35, 132, 534
DdeI CTNAG 1 cut(s) 70
DpnI GATC 1 cut(s) 426
DpnII GATC 1 cut(s) 424
DraI TTTAAA 1 cut(s) 591
Eco130I CCWWGG 1 cut(s) 304
Eco147I AGGCCT 1 cut(s) 68
Eco32I GATATC 2 cut(s) 120, 563
Eco47I GGWCC 1 cut(s) 411
Eco88I CYCGRG 2 cut(s) 193, 207
EcoRV GATATC 2 cut(s) 120, 563
EcoT14I CCWWGG 1 cut(s) 304
EcoT22I ATGCAT 1 cut(s) 364
ErhI CCWWGG 1 cut(s) 304
Esp3I CGTCTC 1 cut(s) 358
FaeI CATG 6 cut(s) 43, 132, 275, 447, 472, 677
FaqI GGGAC 2 cut(s) 617, 676
FatI CATG 6 cut(s) 39, 128, 271, 443, 468, 673
FauNDI CATATG 1 cut(s) 290
Fnu4HI GCNGC 1 cut(s) 96
FokI GGATG 4 cut(s) 127, 174, 349, 371
Fsp4HI GCNGC 1 cut(s) 96
FspBI CTAG 2 cut(s) 428, 627
GluI GCNGC 1 cut(s) 96
HaeIII GGCC 2 cut(s) 68, 653
HapII CCGG 1 cut(s) 409
HgaI GACGC 1 cut(s) 340
Hin1I GRCGYC 1 cut(s) 351
Hin1II CATG 6 cut(s) 43, 132, 275, 447, 472, 677
HinfI GANTC 2 cut(s) 196, 371
HpaII CCGG 1 cut(s) 409
HphI GGTGA 2 cut(s) 73, 211
Hpy188III TCNNGA 3 cut(s) 207, 392, 542
HpyAV CCTTC 6 cut(s) 58, 341, 398, 431, 603, 614
HpyCH4IV ACGT 1 cut(s) 582
HpyCH4V TGCA 6 cut(s) 80, 95, 253, 362, 443, 512
HpyF3I CTNAG 1 cut(s) 70
HpySE526I ACGT 1 cut(s) 582
Hsp92I GRCGYC 1 cut(s) 351
Hsp92II CATG 6 cut(s) 43, 132, 275, 447, 472, 677
Kzo9I GATC 1 cut(s) 424
LmnI GCTCC 2 cut(s) 411, 623
LpnPI CCDG 2 cut(s) 422, 625
Lsp1109I GCAGC 1 cut(s) 107
LweI GCATC 2 cut(s) 371, 499
MaeI CTAG 2 cut(s) 428, 627
MaeII ACGT 1 cut(s) 582
MaeIII GTNAC 1 cut(s) 464
MalI GATC 1 cut(s) 426
MboI GATC 1 cut(s) 424
MboII GAAGA 1 cut(s) 155
MfeI CAATTG 1 cut(s) 566
MluCI AATT 9 cut(s) 55, 136, 157, 315, 321, 397, 537, 566, 656
MlyI GAGTC 1 cut(s) 205
Mph1103I ATGCAT 1 cut(s) 364
MseI TTAA 3 cut(s) 318, 402, 590
MslI CAYNNNNRTG 2 cut(s) 289, 342
MspA1I CMGCKG 1 cut(s) 494
MspI CCGG 1 cut(s) 409
MunI CAATTG 1 cut(s) 566
NdeI CATATG 1 cut(s) 290
NdeII GATC 1 cut(s) 424
NlaIII CATG 6 cut(s) 43, 132, 275, 447, 472, 677
NsiI ATGCAT 1 cut(s) 364
NspI RCATGY 1 cut(s) 677
PaeR7I CTCGAG 2 cut(s) 193, 207
PceI AGGCCT 1 cut(s) 68
PciI ACATGT 1 cut(s) 673
PfeI GAWTC 1 cut(s) 371
PkrI GCNGC 1 cut(s) 97
PleI GAGTC 1 cut(s) 204
PpsI GAGTC 1 cut(s) 204
PscI ACATGT 1 cut(s) 673
PspPI GGNCC 2 cut(s) 411, 652
PspXI VCTCGAGB 1 cut(s) 193
PstI CTGCAG 1 cut(s) 255
PvuII CAGCTG 1 cut(s) 494
RsaI GTAC 3 cut(s) 36, 133, 535
RsaNI GTAC 3 cut(s) 35, 132, 534
RseI CAYNNNNRTG 2 cut(s) 289, 342
SaqAI TTAA 3 cut(s) 318, 402, 590
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 1 cut(s) 424
Sau96I GGNCC 2 cut(s) 411, 652
SchI GAGTC 1 cut(s) 205
SetI ASST 7 cut(s) 408, 442, 455, 496, 585, 628, 672
SfaNI GCATC 2 cut(s) 371, 499
SfcI CTRYAG 1 cut(s) 251
Sfr274I CTCGAG 2 cut(s) 193, 207
SinI GGWCC 1 cut(s) 411
SlaI CTCGAG 2 cut(s) 193, 207
SmiMI CAYNNNNRTG 2 cut(s) 289, 342
SmlI CTYRAG 3 cut(s) 20, 193, 207
SmoI CTYRAG 3 cut(s) 20, 193, 207
Sse9I AATT 9 cut(s) 55, 136, 157, 315, 321, 397, 537, 566, 656
SseBI AGGCCT 1 cut(s) 68
SspI AATATT 1 cut(s) 576
SspMI CTAG 2 cut(s) 428, 627
StuI AGGCCT 1 cut(s) 68
StyI CCWWGG 1 cut(s) 304
TaiI ACGT 1 cut(s) 585
TaqI TCGA 4 cut(s) 194, 208, 393, 423
TasI AATT 9 cut(s) 55, 136, 157, 315, 321, 397, 537, 566, 656
TfiI GAWTC 1 cut(s) 371
Tru1I TTAA 3 cut(s) 318, 402, 590
Tru9I TTAA 3 cut(s) 318, 402, 590
TscAI CASTG 1 cut(s) 129
TseI GCWGC 1 cut(s) 95
TspDTI ATGAA 5 cut(s) 129, 231, 360, 373, 450
TspGWI ACGGA 1 cut(s) 621
TspRI CASTG 1 cut(s) 129
VpaK11BI GGWCC 1 cut(s) 411
XapI RAATTY 1 cut(s) 55
XceI RCATGY 1 cut(s) 677
XhoI CTCGAG 2 cut(s) 193, 207
XspI CTAG 2 cut(s) 428, 627
Zsp2I ATGCAT 1 cut(s) 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.