pycom02g21580

Plant protein of unknown function (DUF936)

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
N/A
Physical Location & Seq
Forward (+)
19840738 .. 19841076
339 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 339 bp
ATGCCAGATGGTTCATCCCCAGACGGTGAAGAAACCCCATCAGAAGAAGCACTGAAGGTAGCTTCAGACAGACGGAAACAGGCAGCATCTTGGGTACAAGCTGCATTAGCCACCAATCTGTCATCTTTCGCTGTATTCAGTAAAGAATCCAGTTTAACCTCTGTTAAAGCTTCAGCTTCCTCTGCTTCAGCTTCCTCTCAAAACCAAAAGTTAGTCTCTGCAAATCAACCCGTGCTAGTTCTAGAAAATTCTACAAAGAATGCGTCAACAAAATCCCAAGGCAAAGTTCGCCAGGCAGTGGGTTCCAAGCTAGGACACCAGGGACACCTCGCCGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

113

Amino Acids

11.57

Weight (kDa)

9.1

Isoelectric Point (pI)

41.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF6857 PF21647 10 - 91 1.3e-12 Domain of unknown function (DUF6857)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 298
AcsI RAATTY 1 cut(s) 247
AcuI CTGAAG 4 cut(s) 48, 74, 156, 171
AfaI GTAC 1 cut(s) 96
AfiI CCNNNNNNNGG 1 cut(s) 298
AjnI CCWGG 2 cut(s) 291, 318
AjuI GAANNNNNNNTTGG 2 cut(s) 270, 302
AluBI AGCT 6 cut(s) 62, 101, 170, 176, 191, 310
AluI AGCT 6 cut(s) 62, 101, 170, 176, 191, 310
Alw26I GTCTC 1 cut(s) 220
ApeKI GCWGC 2 cut(s) 83, 101
ApoI RAATTY 1 cut(s) 247
ArsI GACNNNNNNTTYG 2 cut(s) 248, 280
AsuHPI GGTGA 1 cut(s) 38
BbvI GCAGC 2 cut(s) 88, 95
BccI CCATC 2 cut(s) 2, 46
BciT130I CCWGG 2 cut(s) 293, 320
BcoDI GTCTC 1 cut(s) 220
BfaI CTAG 3 cut(s) 236, 242, 311
BisI GCNGC 2 cut(s) 84, 102
BlsI GCNGC 2 cut(s) 85, 103
Bme1390I CCNGG 2 cut(s) 293, 320
BmiI GGNNCC 1 cut(s) 304
BmrFI CCNGG 2 cut(s) 293, 320
BmsI GCATC 1 cut(s) 95
BsaJI CCNNGG 2 cut(s) 277, 319
Bsc4I CCNNNNNNNGG 1 cut(s) 298
Bse1I ACTGG 1 cut(s) 150
BseBI CCWGG 2 cut(s) 293, 320
BseDI CCNNGG 2 cut(s) 277, 319
BseGI GGATG 1 cut(s) 14
BseLI CCNNNNNNNGG 1 cut(s) 298
BseNI ACTGG 1 cut(s) 150
BseXI GCAGC 2 cut(s) 88, 95
BslI CCNNNNNNNGG 1 cut(s) 298
BsmAI GTCTC 1 cut(s) 220
BsmI GAATGC 1 cut(s) 265
BspLI GGNNCC 1 cut(s) 304
BsrI ACTGG 1 cut(s) 150
BssECI CCNNGG 2 cut(s) 277, 319
BssT1I CCWWGG 1 cut(s) 277
Bst2UI CCWGG 2 cut(s) 293, 320
Bst4CI ACNGT 1 cut(s) 26
BstF5I GGATG 1 cut(s) 14
BstMAI GTCTC 1 cut(s) 220
BstMWI GCNNNNNNNGC 3 cut(s) 107, 182, 288
BstNI CCWGG 2 cut(s) 293, 320
BstSCI CCNGG 2 cut(s) 291, 318
BstV1I GCAGC 2 cut(s) 88, 95
BtsCI GGATG 1 cut(s) 14
BtsI GCAGTG 1 cut(s) 303
BtsIMutI CAGTG 2 cut(s) 50, 303
CseI GACGC 1 cut(s) 252
Csp6I GTAC 1 cut(s) 95
CviJI RGCY 7 cut(s) 62, 101, 110, 170, 176, 191, 310
CviKI_1 RGCY 7 cut(s) 62, 101, 110, 170, 176, 191, 310
CviQI GTAC 1 cut(s) 95
Eco130I CCWWGG 1 cut(s) 277
Eco57I CTGAAG 4 cut(s) 48, 74, 156, 171
EcoRII CCWGG 2 cut(s) 291, 318
EcoT14I CCWWGG 1 cut(s) 277
ErhI CCWWGG 1 cut(s) 277
Fnu4HI GCNGC 2 cut(s) 84, 102
Fsp4HI GCNGC 2 cut(s) 84, 102
FspBI CTAG 3 cut(s) 236, 242, 311
GluI GCNGC 2 cut(s) 84, 102
HgaI GACGC 1 cut(s) 252
HincII GTYRAC 1 cut(s) 267
HindII GTYRAC 1 cut(s) 267
HindIII AAGCTT 1 cut(s) 168
HinfI GANTC 1 cut(s) 146
HphI GGTGA 1 cut(s) 38
Hpy166II GTNNAC 1 cut(s) 267
Hpy188I TCNGA 2 cut(s) 43, 67
Hpy188III TCNNGA 1 cut(s) 242
Hpy8I GTNNAC 1 cut(s) 267
HpyAV CCTTC 1 cut(s) 49
HpyCH4III ACNGT 1 cut(s) 26
HpyCH4V TGCA 2 cut(s) 104, 221
HpyF10VI GCNNNNNNNGC 3 cut(s) 107, 182, 288
LpnPI CCDG 8 cut(s) 18, 33, 65, 163, 278, 305, 305, 332
Lsp1109I GCAGC 2 cut(s) 88, 95
LweI GCATC 1 cut(s) 95
MaeI CTAG 3 cut(s) 236, 242, 311
MboII GAAGA 2 cut(s) 41, 56
MluCI AATT 1 cut(s) 247
MnlI CCTC 4 cut(s) 169, 190, 205, 338
MseI TTAA 2 cut(s) 155, 165
MspR9I CCNGG 2 cut(s) 293, 320
Mva1269I GAATGC 1 cut(s) 265
MvaI CCWGG 2 cut(s) 293, 320
MwoI GCNNNNNNNGC 3 cut(s) 107, 182, 288
NlaIV GGNNCC 1 cut(s) 304
PctI GAATGC 1 cut(s) 265
PfeI GAWTC 1 cut(s) 146
PflMI CCANNNNNTGG 1 cut(s) 298
PkrI GCNGC 2 cut(s) 85, 103
Psp6I CCWGG 2 cut(s) 291, 318
PspGI CCWGG 2 cut(s) 291, 318
PspN4I GGNNCC 1 cut(s) 304
RsaI GTAC 1 cut(s) 96
RsaNI GTAC 1 cut(s) 95
SaqAI TTAA 2 cut(s) 155, 165
SatI GCNGC 2 cut(s) 84, 102
ScrFI CCNGG 2 cut(s) 293, 320
SetI ASST 9 cut(s) 60, 64, 103, 161, 172, 178, 193, 312, 330
SfaNI GCATC 1 cut(s) 95
Sse9I AATT 1 cut(s) 247
SspMI CTAG 3 cut(s) 236, 242, 311
StyD4I CCNGG 2 cut(s) 291, 318
StyI CCWWGG 1 cut(s) 277
TaaI ACNGT 1 cut(s) 26
TasI AATT 1 cut(s) 247
TfiI GAWTC 1 cut(s) 146
Tru1I TTAA 2 cut(s) 155, 165
Tru9I TTAA 2 cut(s) 155, 165
TscAI CASTG 2 cut(s) 57, 303
TseI GCWGC 2 cut(s) 83, 101
TspGWI ACGGA 1 cut(s) 88
TspRI CASTG 2 cut(s) 57, 303
Van91I CCANNNNNTGG 1 cut(s) 298
XapI RAATTY 1 cut(s) 247
XbaI TCTAGA 1 cut(s) 241
XspI CTAG 3 cut(s) 236, 242, 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.