pycom02g21590

Plant protein of unknown function (DUF936)

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
N/A
Physical Location & Seq
Forward (+)
19841277 .. 19841498
222 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 222 bp
ATGCTAACTCAGCTCAAGAGTGTGAATGATTGGTTGGATAACATCGGTTCTAGTCAAGAAGGGGTTGAAACAACCGATGTTTCAGCGGAGACCATTGACAGGCTGAGGAAGAAGATCTATGAGTATCTTCTCACACATGTTGAATCTGCTGCTGCTGCGCTTGGCGGCGGATCACAGTCATCACCTCGAATCCGAACACCAGATACAAAAGTTAGAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

74

Amino Acids

8.06

Weight (kDa)

6.55

Isoelectric Point (pI)

48.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF6857 PF21647 1 - 54 1.9e-21 Domain of unknown function (DUF6857)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 86, 165, 168
AclWI GGATC 1 cut(s) 178
AfiI CCNNNNNNNGG 1 cut(s) 99
AflIII ACRYGT 1 cut(s) 136
AgsI TTSAA 2 cut(s) 68, 143
AjuI GAANNNNNNNTTGG 2 cut(s) 17, 49
AluBI AGCT 1 cut(s) 13
AluI AGCT 1 cut(s) 13
Alw26I GTCTC 1 cut(s) 83
AlwI GGATC 1 cut(s) 178
ApeKI GCWGC 3 cut(s) 149, 152, 155
AspLEI GCGC 1 cut(s) 160
AsuHPI GGTGA 1 cut(s) 174
BaeI ACNNNNGTAYC 1 cut(s) 195
BbvCI CCTCAGC 1 cut(s) 104
BbvI GCAGC 3 cut(s) 136, 139, 142
BcoDI GTCTC 1 cut(s) 83
BfaI CTAG 1 cut(s) 51
BglII AGATCT 1 cut(s) 114
BisI GCNGC 4 cut(s) 150, 153, 156, 166
BlsI GCNGC 4 cut(s) 151, 154, 157, 167
Bpu10I CCTNAGC 1 cut(s) 104
BsaI GGTCTC 1 cut(s) 83
Bsc4I CCNNNNNNNGG 1 cut(s) 99
BseLI CCNNNNNNNGG 1 cut(s) 99
BseMII CTCAG 2 cut(s) 23, 95
BseXI GCAGC 3 cut(s) 136, 139, 142
BslI CCNNNNNNNGG 1 cut(s) 99
BsmAI GTCTC 1 cut(s) 83
Bso31I GGTCTC 1 cut(s) 83
Bsp143I GATC 2 cut(s) 114, 170
BspACI CCGC 3 cut(s) 86, 165, 168
BspCNI CTCAG 2 cut(s) 22, 96
BspPI GGATC 1 cut(s) 178
BspTNI GGTCTC 1 cut(s) 83
BssMI GATC 2 cut(s) 114, 170
Bst4CI ACNGT 1 cut(s) 177
BstDEI CTNAG 2 cut(s) 9, 104
BstHHI GCGC 1 cut(s) 160
BstKTI GATC 2 cut(s) 117, 173
BstMAI GTCTC 1 cut(s) 83
BstMBI GATC 2 cut(s) 114, 170
BstMWI GCNNNNNNNGC 2 cut(s) 10, 155
BstNSI RCATGY 1 cut(s) 140
BstV1I GCAGC 3 cut(s) 136, 139, 142
BstX2I RGATCY 1 cut(s) 114
BstYI RGATCY 1 cut(s) 114
CfoI GCGC 1 cut(s) 160
CviAII CATG 1 cut(s) 137
CviJI RGCY 2 cut(s) 13, 103
CviKI_1 RGCY 2 cut(s) 13, 103
DdeI CTNAG 2 cut(s) 9, 104
DpnI GATC 2 cut(s) 116, 172
DpnII GATC 2 cut(s) 114, 170
EciI GGCGGA 1 cut(s) 183
Eco31I GGTCTC 1 cut(s) 83
FaeI CATG 1 cut(s) 140
FaiI YATR 2 cut(s) 120, 138
FatI CATG 1 cut(s) 136
Fnu4HI GCNGC 4 cut(s) 150, 153, 156, 166
Fsp4HI GCNGC 4 cut(s) 150, 153, 156, 166
FspBI CTAG 1 cut(s) 51
GlaI GCGC 1 cut(s) 159
GluI GCNGC 4 cut(s) 150, 153, 156, 166
HhaI GCGC 1 cut(s) 160
Hin1II CATG 1 cut(s) 140
Hin6I GCGC 1 cut(s) 158
HinP1I GCGC 1 cut(s) 158
HinfI GANTC 2 cut(s) 143, 189
HphI GGTGA 1 cut(s) 174
Hpy188I TCNGA 1 cut(s) 194
Hpy188III TCNNGA 2 cut(s) 16, 56
HpyAV CCTTC 2 cut(s) 53, 210
HpyCH4III ACNGT 1 cut(s) 177
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 155
HpyF3I CTNAG 2 cut(s) 9, 104
Hsp92II CATG 1 cut(s) 140
HspAI GCGC 1 cut(s) 158
Kzo9I GATC 2 cut(s) 114, 170
LpnPI CCDG 2 cut(s) 85, 213
Lsp1109I GCAGC 3 cut(s) 136, 139, 142
MaeI CTAG 1 cut(s) 51
MalI GATC 2 cut(s) 116, 172
MboI GATC 2 cut(s) 114, 170
MboII GAAGA 3 cut(s) 119, 121, 124
MflI RGATCY 1 cut(s) 114
MmeI TCCRAC 1 cut(s) 15
MnlI CCTC 2 cut(s) 99, 195
MspA1I CMGCKG 1 cut(s) 86
MwoI GCNNNNNNNGC 2 cut(s) 10, 155
NdeII GATC 2 cut(s) 114, 170
NlaIII CATG 1 cut(s) 140
NspI RCATGY 1 cut(s) 140
PciI ACATGT 1 cut(s) 136
PfeI GAWTC 2 cut(s) 143, 189
PkrI GCNGC 4 cut(s) 151, 154, 157, 167
PscI ACATGT 1 cut(s) 136
PsrI GAACNNNNNNTAC 2 cut(s) 187, 219
PsuI RGATCY 1 cut(s) 114
SatI GCNGC 4 cut(s) 150, 153, 156, 166
Sau3AI GATC 2 cut(s) 114, 170
SetI ASST 3 cut(s) 15, 187, 221
SgeI CNNG 8 cut(s) 28, 63, 68, 112, 149, 173, 198, 212
SmlI CTYRAG 1 cut(s) 14
SmoI CTYRAG 1 cut(s) 14
SsiI CCGC 3 cut(s) 86, 165, 168
SspMI CTAG 1 cut(s) 51
TaaI ACNGT 1 cut(s) 177
TaqI TCGA 1 cut(s) 187
TauI GCSGC 1 cut(s) 168
TfiI GAWTC 2 cut(s) 143, 189
TseI GCWGC 3 cut(s) 149, 152, 155
XceI RCATGY 1 cut(s) 140
XspI CTAG 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.