pycom02g21870

polynucleotide adenylyltransferase activity

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
N/A
Physical Location & Seq
Reverse (-)
20038912 .. 20039667
756 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 375 bp
ATGAATTGGCCACTTTGCCCCTCTCTCATTTTTCTTCCATTTTTCACTTTCTTTCTTTTCTTCTCTCTGTCTTTCCGTTTCTCTCTATTTCTCCGTTTGTCTTTCGGTTTTGATTCCAATCGGATCGTGTTGAACGGTGTTTGGCATGTTTTTCTCGCTGTTTTCCACGAACGAATCGCTCTGTTTCAGGTCCTTTATAGATTTTTGGATTACTTAAGCAAATTTGACTGGGAGAACTATTGTATAAGTTTAAACGGGCGTGTGAGGAGCTCAAGATCTGCTAAAAGGTATTTTCACCTTCTTCTTCTTTTTTTTTCCCTGTGTGTTTGTTTTTTAACTTTTGGGTATTTGGTAAAGCTTTCATCTTTTGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

14.9

Weight (kDa)

9.69

Isoelectric Point (pI)

30.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP-OAS1 PF26180 52 - 91 1.1e-11 PAP/OAS1 substrate-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 131
AcoI YGGCCR 1 cut(s) 8
AcsI RAATTY 1 cut(s) 221
AflII CTTAAG 1 cut(s) 214
AgsI TTSAA 1 cut(s) 133
AluBI AGCT 2 cut(s) 270, 358
AluI AGCT 2 cut(s) 270, 358
Alw21I GWGCWC 1 cut(s) 272
AlwI GGATC 1 cut(s) 131
AoxI GGCC 1 cut(s) 8
ApoI RAATTY 1 cut(s) 221
AspS9I GGNCC 1 cut(s) 190
AsuHPI GGTGA 1 cut(s) 287
AvaII GGWCC 1 cut(s) 190
BalI TGGCCA 1 cut(s) 10
BanII GRGCYC 1 cut(s) 272
Bbv12I GWGCWC 1 cut(s) 272
BfrI CTTAAG 1 cut(s) 214
BglII AGATCT 1 cut(s) 275
Bme18I GGWCC 1 cut(s) 190
BmgT120I GGNCC 1 cut(s) 190
BmrI ACTGGG 1 cut(s) 238
BmuI ACTGGG 1 cut(s) 238
BpuEI CTTGAG 1 cut(s) 256
BsaBI GATNNNNATC 1 cut(s) 117
Bse1I ACTGG 1 cut(s) 233
Bse8I GATNNNNATC 1 cut(s) 117
BseJI GATNNNNATC 1 cut(s) 117
BseNI ACTGG 1 cut(s) 233
BseRI GAGGAG 1 cut(s) 280
BshFI GGCC 1 cut(s) 10
BsiHKAI GWGCWC 1 cut(s) 272
BsnI GGCC 1 cut(s) 10
Bsp1286I GDGCHC 1 cut(s) 272
Bsp143I GATC 2 cut(s) 123, 275
BspANI GGCC 1 cut(s) 10
BspPI GGATC 1 cut(s) 131
BspTI CTTAAG 1 cut(s) 214
BsrI ACTGG 1 cut(s) 233
BssMI GATC 2 cut(s) 123, 275
Bst4CI ACNGT 1 cut(s) 137
BstAFI CTTAAG 1 cut(s) 214
BstKTI GATC 2 cut(s) 126, 278
BstMBI GATC 2 cut(s) 123, 275
BstNSI RCATGY 1 cut(s) 149
BstX2I RGATCY 1 cut(s) 275
BstYI RGATCY 1 cut(s) 275
BsuRI GGCC 1 cut(s) 10
Cfr13I GGNCC 1 cut(s) 190
CviAII CATG 1 cut(s) 146
CviJI RGCY 3 cut(s) 10, 270, 358
CviKI_1 RGCY 3 cut(s) 10, 270, 358
DpnI GATC 2 cut(s) 125, 277
DpnII GATC 2 cut(s) 123, 275
DraI TTTAAA 1 cut(s) 252
EaeI YGGCCR 1 cut(s) 8
Ecl136II GAGCTC 1 cut(s) 270
Eco24I GRGCYC 1 cut(s) 272
Eco47I GGWCC 1 cut(s) 190
Eco53kI GAGCTC 1 cut(s) 270
EcoICRI GAGCTC 1 cut(s) 270
EcoO109I RGGNCCY 1 cut(s) 190
EcoT38I GRGCYC 1 cut(s) 272
FaeI CATG 1 cut(s) 149
FaiI YATR 3 cut(s) 147, 198, 245
FatI CATG 1 cut(s) 145
FriOI GRGCYC 1 cut(s) 272
HaeIII GGCC 1 cut(s) 10
Hin1II CATG 1 cut(s) 149
HindIII AAGCTT 1 cut(s) 356
HinfI GANTC 2 cut(s) 113, 174
HphI GGTGA 1 cut(s) 287
Hpy188I TCNGA 1 cut(s) 123
Hpy188III TCNNGA 1 cut(s) 273
HpyAV CCTTC 1 cut(s) 308
HpyCH4III ACNGT 1 cut(s) 137
Hsp92II CATG 1 cut(s) 149
Kzo9I GATC 2 cut(s) 123, 275
LmnI GCTCC 1 cut(s) 267
LpnPI CCDG 3 cut(s) 173, 214, 332
MalI GATC 2 cut(s) 125, 277
MboI GATC 2 cut(s) 123, 275
MboII GAAGA 4 cut(s) 26, 52, 293, 296
MflI RGATCY 1 cut(s) 275
MhlI GDGCHC 1 cut(s) 272
MlsI TGGCCA 1 cut(s) 10
MluCI AATT 2 cut(s) 4, 221
MluNI TGGCCA 1 cut(s) 10
MnlI CCTC 2 cut(s) 31, 258
Mox20I TGGCCA 1 cut(s) 10
MscI TGGCCA 1 cut(s) 10
MseI TTAA 3 cut(s) 215, 251, 335
Msp20I TGGCCA 1 cut(s) 10
MspCI CTTAAG 1 cut(s) 214
MssI GTTTAAAC 1 cut(s) 252
NdeII GATC 2 cut(s) 123, 275
NlaIII CATG 1 cut(s) 149
NspI RCATGY 1 cut(s) 149
PfeI GAWTC 2 cut(s) 113, 174
PmeI GTTTAAAC 1 cut(s) 252
PpuMI RGGWCCY 1 cut(s) 190
Psp124BI GAGCTC 1 cut(s) 272
Psp5II RGGWCCY 1 cut(s) 190
PspPI GGNCC 1 cut(s) 190
PspPPI RGGWCCY 1 cut(s) 190
PsuI RGATCY 1 cut(s) 275
SacI GAGCTC 1 cut(s) 272
SaqAI TTAA 3 cut(s) 215, 251, 335
Sau3AI GATC 2 cut(s) 123, 275
Sau96I GGNCC 1 cut(s) 190
SduI GDGCHC 1 cut(s) 272
SetI ASST 5 cut(s) 192, 272, 290, 300, 360
SinI GGWCC 1 cut(s) 190
SmlI CTYRAG 2 cut(s) 214, 271
SmoI CTYRAG 2 cut(s) 214, 271
Sse9I AATT 2 cut(s) 4, 221
SstI GAGCTC 1 cut(s) 272
TaaI ACNGT 1 cut(s) 137
TasI AATT 2 cut(s) 4, 221
TfiI GAWTC 2 cut(s) 113, 174
Tru1I TTAA 3 cut(s) 215, 251, 335
Tru9I TTAA 3 cut(s) 215, 251, 335
TspDTI ATGAA 2 cut(s) 17, 351
TspGWI ACGGA 2 cut(s) 65, 83
Vha464I CTTAAG 1 cut(s) 214
VpaK11BI GGWCC 1 cut(s) 190
XapI RAATTY 1 cut(s) 221
XceI RCATGY 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.