pycom02g22590

TRAF-type zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
N/A
Physical Location & Seq
Forward (+)
20710251 .. 20712476
2226 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1674 bp
ATGCACAAGTATCTGATCGATCCGTATGATATCATTTCTGATTTTGTCGATGACTTTGCAAGTTCCAAGAGAAATCTGTTTGGTCGGGTTTCAGGATGGCTGCTAAGTGAAAAAAGAGAAGATAAGATAGATGATTTTGTTCAAGAGATGGAAATAAACGGGTTTTGGTTGATTGATAAAAGAGAAGCTATAGCACAGACTCTGCTTAAAAATGTTGACTTTAAGGATGAACATCACTGCAACATGAAGTTTAACTCTCCAGAAGCGCTTGCCGAGCATGCTTCAAGCTGCAGTTTTAGGTCTATGACTTGCACAAATGAGGGGTGTACTACTGTATTTTGTGCTAGTCACATGGAGAAACATGATTCAATTTGCCCGTTCAAGATAATTCCATGTGAACAAAACTGCTCCAATACCATCATGAGACGCCAGATGGACAGACATTGTATTACCGTATGTCCAATGAAGCTTGTTAGTTGTCCTTTCTATGCAGTGGGTTGTCAATCCCCTGTACCACATTGTAAAGTTGAGCAACATCGTTCAGATGATATCCATTCTCACTTGCTTTTCATTCTTCAAACTATTCACAAGGAAGTGTCTGCAGAGGATCTAAAGAAACGAGTGGAGCAAGTAGAAAAGGCATCTTCATCCGGTCAACTAGTGGAAGCTCGAGATGTGAGGTCGTTAACATCTGCAGTCAAGGGTATTGAAGAGAAACTTGGTCCAATGCAAGTGACCAGCAAGCACCCAGAGGATGTTGAATCAAAGCTAGGGCCAGCAGATTTGAGCAGCAAAAATCCAGAGGGTCCTGAAGCAATATTAGGGCCAATGGAAGTGACCAGCAAACCCGCTGAGGATCTTGAAGCAAAACTTCAGCCACAGGAAGTGAACAGAAGTGCACCAGAGGATGTTGAAACAAAACTAGGGCCAAAGGAAGTGAGCAGCAAGCCCCCTGAGGATCGTGAAAATAAACTAGGGTCAAAAGAAATGAGCAGCCAACCCCAAGAGGATCTTGAAACAAACCAAGGGTCAAGGGAAGTGAGACCCCAAGAAGATGTTGAAACAAACAAAGGGTCAAAGGAAGTGAGCAGCAAACCCCCTGAGGATTCTGAAACGAAGGTTGGGACAAGGGAACTGAGCAGAAAATCCCCAAAGGACGTTGAGAAAAAGCTAGCACCAAAGGAAGTGGACAACAAACCCCCCAAGGATCCTGAAACAAAGGTTGGGCCAAAGGAACTGAGCAGAAAATCCCCGCAGGATGTTGAAGAAAAACTAGAGCCAAAGGAAGTGGACAGCAAGCCCCTAGAGGATCATGAAGCAAAAATCGGGACAAGGGATGTGGACAACGAATCCCCGAAGGATATTGAAGCAAAACGGGAGCCAAAGGATGTGAAAAAAGAATCCCCCAAGGATATTGAAGCAAAACACGGGCCAAAGGAAGTGAACAATGAATCCCCCAAGGATATTGAAGCAAAAGTAGGGTCAAAGGAAGTGAGTGGCAAAGACTCGAAGGATATTGATGCAAACGTAGGTCGTAATGAAATCAGCAGCAAACACCAGAAGGATCTTGAAGCAAAACTGGGGCCGACAGAAGTGAGCAGCAAACACAAGGATAGTGGAGAGAGTAGGGAAACCTCAACTTCTCAAAATGCCTTGGAGGATGCTGAAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00130 map00130
Pfam Domains
Protein Families
zf-TRAF

Protein Analysis

558

Amino Acids

62.27

Weight (kDa)

5.33

Isoelectric Point (pI)

55.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-TRAF PF02176 121 - 179 1.7e-10 TRAF-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 849, 1253
AclWI GGATC 9 cut(s) 14, 615, 864, 966, 1017, 1202, 1215, 1317, 1572
AcuI CTGAAG 2 cut(s) 831, 857
AcyI GRCGYC 1 cut(s) 427
AfaI GTAC 2 cut(s) 328, 513
AfeI AGCGCT 1 cut(s) 267
AhlI ACTAGT 1 cut(s) 658
AjuI GAANNNNNNNTTGG 6 cut(s) 702, 734, 1104, 1136, 1206, 1238
AloI GAACNNNNNNTCC 2 cut(s) 1436, 1468
AluBI AGCT 6 cut(s) 188, 288, 469, 668, 769, 1171
AluI AGCT 6 cut(s) 188, 288, 469, 668, 769, 1171
Alw21I GWGCWC 1 cut(s) 901
Alw26I GTCTC 2 cut(s) 418, 1036
Alw44I GTGCAC 1 cut(s) 897
AlwI GGATC 9 cut(s) 14, 615, 864, 966, 1017, 1202, 1215, 1317, 1572
AlwNI CAGNNNCTG 1 cut(s) 202
Ama87I CYCGRG 1 cut(s) 669
Aor51HI AGCGCT 1 cut(s) 267
AoxI GGCC 6 cut(s) 773, 824, 926, 1226, 1430, 1583
ApaLI GTGCAC 1 cut(s) 897
ApeKI GCWGC 8 cut(s) 100, 288, 789, 942, 993, 1089, 1548, 1599
ArsI GACNNNNNNTTYG 6 cut(s) 1013, 1045, 1058, 1090, 1466, 1498
AspLEI GCGC 1 cut(s) 268
AspS9I GGNCC 8 cut(s) 722, 773, 806, 824, 926, 1226, 1430, 1583
AsuNHI GCTAGC 1 cut(s) 1171
AvaI CYCGRG 1 cut(s) 669
AvaII GGWCC 2 cut(s) 722, 806
AxyI CCTNAGG 2 cut(s) 954, 1101
BaeGI GKGCMC 1 cut(s) 901
BamHI GGATCC 1 cut(s) 1207
Bbv12I GWGCWC 1 cut(s) 901
BbvCI CCTCAGC 1 cut(s) 852
BbvI GCAGC 8 cut(s) 87, 275, 801, 954, 1005, 1101, 1560, 1611
BccI CCATC 4 cut(s) 90, 142, 425, 427
BcgI CGANNNNNNTGC 2 cut(s) 38, 72
BcoDI GTCTC 2 cut(s) 418, 1036
BcuI ACTAGT 1 cut(s) 658
BfaI CTAG 8 cut(s) 345, 659, 770, 923, 974, 1172, 1274, 1304
BfmI CTRYAG 4 cut(s) 189, 289, 600, 693
BfoI RGCGCY 1 cut(s) 269
BisI GCNGC 8 cut(s) 101, 289, 790, 943, 994, 1090, 1549, 1600
BlsI GCNGC 8 cut(s) 102, 290, 791, 944, 995, 1091, 1550, 1601
Bme18I GGWCC 2 cut(s) 722, 806
BmeT110I CYCGRG 1 cut(s) 669
BmgT120I GGNCC 8 cut(s) 722, 773, 806, 824, 926, 1226, 1430, 1583
BmiI GGNNCC 4 cut(s) 807, 1209, 1380, 1584
BmrI ACTGGG 1 cut(s) 1589
BmsI GCATC 3 cut(s) 650, 1510, 1651
BmtI GCTAGC 1 cut(s) 1175
BmuI ACTGGG 1 cut(s) 1589
BpmI CTGGAG 1 cut(s) 243
Bpu10I CCTNAGC 1 cut(s) 852
Bsa29I ATCGAT 1 cut(s) 18
BsaBI GATNNNNATC 1 cut(s) 231
BsaHI GRCGYC 1 cut(s) 427
BsaI GGTCTC 1 cut(s) 1036
BsaJI CCNNGG 5 cut(s) 1024, 1203, 1407, 1458, 1653
BsaWI WCCGGW 1 cut(s) 650
Bse1I ACTGG 1 cut(s) 1584
Bse21I CCTNAGG 2 cut(s) 954, 1101
Bse8I GATNNNNATC 1 cut(s) 231
BseCI ATCGAT 1 cut(s) 18
BseDI CCNNGG 5 cut(s) 1024, 1203, 1407, 1458, 1653
BseGI GGATG 9 cut(s) 101, 232, 647, 760, 913, 1264, 1342, 1393, 1666
BseJI GATNNNNATC 1 cut(s) 231
BseMII CTCAG 5 cut(s) 843, 945, 1092, 1127, 1229
BseNI ACTGG 1 cut(s) 1584
BseSI GKGCMC 1 cut(s) 901
BseXI GCAGC 8 cut(s) 87, 275, 801, 954, 1005, 1101, 1560, 1611
BshFI GGCC 6 cut(s) 775, 826, 928, 1228, 1432, 1585
BshVI ATCGAT 1 cut(s) 18
BsiHKAI GWGCWC 1 cut(s) 901
BsiHKCI CYCGRG 1 cut(s) 669
BsiSI CCGG 1 cut(s) 651
BslFI GGGAC 2 cut(s) 1138, 1342
BsmAI GTCTC 2 cut(s) 418, 1036
BsmBI CGTCTC 1 cut(s) 418
BsmFI GGGAC 2 cut(s) 1138, 1342
BsnI GGCC 6 cut(s) 775, 826, 928, 1228, 1432, 1585
Bso31I GGTCTC 1 cut(s) 1036
BsoBI CYCGRG 1 cut(s) 669
Bsp1286I GDGCHC 1 cut(s) 901
Bsp143I GATC 9 cut(s) 15, 19, 607, 856, 958, 1009, 1207, 1309, 1564
BspACI CCGC 2 cut(s) 849, 1253
BspANI GGCC 6 cut(s) 775, 826, 928, 1228, 1432, 1585
BspCNI CTCAG 5 cut(s) 844, 946, 1093, 1128, 1230
BspDI ATCGAT 1 cut(s) 18
BspHI TCATGA 2 cut(s) 420, 1312
BspLI GGNNCC 4 cut(s) 807, 1209, 1380, 1584
BspMAI CTGCAG 3 cut(s) 293, 604, 697
BspOI GCTAGC 1 cut(s) 1175
BspPI GGATC 9 cut(s) 14, 615, 864, 966, 1017, 1202, 1215, 1317, 1572
BspTNI GGTCTC 1 cut(s) 1036
BsrI ACTGG 1 cut(s) 1584
BssECI CCNNGG 5 cut(s) 1024, 1203, 1407, 1458, 1653
BssMI GATC 9 cut(s) 15, 19, 607, 856, 958, 1009, 1207, 1309, 1564
BssNI GRCGYC 1 cut(s) 427
BssT1I CCWWGG 5 cut(s) 1024, 1203, 1407, 1458, 1653
Bst4CI ACNGT 2 cut(s) 334, 454
Bst6I CTCTTC 1 cut(s) 705
BstACI GRCGYC 1 cut(s) 427
BstC8I GCNNGC 7 cut(s) 270, 279, 743, 777, 947, 1173, 1298
BstDEI CTNAG 6 cut(s) 104, 852, 954, 1101, 1136, 1238
BstF5I GGATG 9 cut(s) 101, 232, 647, 760, 913, 1264, 1342, 1393, 1666
BstH2I RGCGCY 1 cut(s) 269
BstHHI GCGC 1 cut(s) 268
BstKTI GATC 9 cut(s) 18, 22, 610, 859, 961, 1012, 1210, 1312, 1567
BstMAI GTCTC 2 cut(s) 418, 1036
BstMBI GATC 9 cut(s) 15, 19, 607, 856, 958, 1009, 1207, 1309, 1564
BstMWI GCNNNNNNNGC 2 cut(s) 274, 278
BstNSI RCATGY 1 cut(s) 281
BstSFI CTRYAG 4 cut(s) 189, 289, 600, 693
BstSLI GKGCMC 1 cut(s) 901
BstV1I GCAGC 8 cut(s) 87, 275, 801, 954, 1005, 1101, 1560, 1611
BstX2I RGATCY 5 cut(s) 607, 856, 1009, 1207, 1564
BstYI RGATCY 5 cut(s) 607, 856, 1009, 1207, 1564
Bsu15I ATCGAT 1 cut(s) 18
Bsu36I CCTNAGG 2 cut(s) 954, 1101
BsuRI GGCC 6 cut(s) 775, 826, 928, 1228, 1432, 1585
BsuTUI ATCGAT 1 cut(s) 18
BtsCI GGATG 9 cut(s) 101, 232, 647, 760, 913, 1264, 1342, 1393, 1666
BtsI GCAGTG 2 cut(s) 235, 498
BtsIMutI CAGTG 2 cut(s) 235, 498
Cac8I GCNNGC 7 cut(s) 270, 279, 743, 777, 947, 1173, 1298
CaiI CAGNNNCTG 1 cut(s) 202
CciI TCATGA 2 cut(s) 420, 1312
CfoI GCGC 1 cut(s) 268
Cfr13I GGNCC 8 cut(s) 722, 773, 806, 824, 926, 1226, 1430, 1583
ClaI ATCGAT 1 cut(s) 18
CseI GACGC 1 cut(s) 435
Csp6I GTAC 2 cut(s) 327, 512
CspCI CAANNNNNGTGG 8 cut(s) 1167, 1202, 1269, 1304, 1320, 1355, 1597, 1632
CviAII CATG 7 cut(s) 244, 278, 352, 362, 393, 421, 1313
CviQI GTAC 2 cut(s) 327, 512
DdeI CTNAG 6 cut(s) 104, 852, 954, 1101, 1136, 1238
DpnI GATC 9 cut(s) 17, 21, 609, 858, 960, 1011, 1209, 1311, 1566
DpnII GATC 9 cut(s) 15, 19, 607, 856, 958, 1009, 1207, 1309, 1564
Eam1104I CTCTTC 1 cut(s) 705
EarI CTCTTC 1 cut(s) 705
Eco130I CCWWGG 5 cut(s) 1024, 1203, 1407, 1458, 1653
Eco31I GGTCTC 1 cut(s) 1036
Eco32I GATATC 2 cut(s) 31, 550
Eco47I GGWCC 2 cut(s) 722, 806
Eco47III AGCGCT 1 cut(s) 267
Eco57I CTGAAG 2 cut(s) 831, 857
Eco81I CCTNAGG 2 cut(s) 954, 1101
Eco88I CYCGRG 1 cut(s) 669
EcoO109I RGGNCCY 1 cut(s) 806
EcoRV GATATC 2 cut(s) 31, 550
EcoT14I CCWWGG 5 cut(s) 1024, 1203, 1407, 1458, 1653
ErhI CCWWGG 5 cut(s) 1024, 1203, 1407, 1458, 1653
Esp3I CGTCTC 1 cut(s) 418
FaeI CATG 7 cut(s) 247, 281, 355, 365, 396, 424, 1316
FalI AAGNNNNNCTT 6 cut(s) 702, 734, 855, 887, 996, 1028
FaqI GGGAC 2 cut(s) 1138, 1342
FatI CATG 7 cut(s) 243, 277, 351, 361, 392, 420, 1312
FauI CCCGC 2 cut(s) 856, 1260
Fnu4HI GCNGC 8 cut(s) 101, 289, 790, 943, 994, 1090, 1549, 1600
FokI GGATG 8 cut(s) 108, 239, 634, 767, 920, 1271, 1349, 1400
Fsp4HI GCNGC 8 cut(s) 101, 289, 790, 943, 994, 1090, 1549, 1600
FspBI CTAG 8 cut(s) 345, 659, 770, 923, 974, 1172, 1274, 1304
GlaI GCGC 1 cut(s) 267
GluI GCNGC 8 cut(s) 101, 289, 790, 943, 994, 1090, 1549, 1600
GsuI CTGGAG 1 cut(s) 243
HaeII RGCGCY 1 cut(s) 269
HaeIII GGCC 6 cut(s) 775, 826, 928, 1228, 1432, 1585
HapII CCGG 1 cut(s) 651
HgaI GACGC 1 cut(s) 435
HhaI GCGC 1 cut(s) 268
Hin1I GRCGYC 1 cut(s) 427
Hin1II CATG 7 cut(s) 247, 281, 355, 365, 396, 424, 1316
Hin6I GCGC 1 cut(s) 266
HinP1I GCGC 1 cut(s) 266
HincII GTYRAC 3 cut(s) 217, 656, 687
HindII GTYRAC 3 cut(s) 217, 656, 687
HindIII AAGCTT 1 cut(s) 467
HinfI GANTC 8 cut(s) 199, 365, 761, 1106, 1349, 1400, 1451, 1505
HpaI GTTAAC 1 cut(s) 687
HpaII CCGG 1 cut(s) 651
Hpy188I TCNGA 4 cut(s) 15, 40, 544, 1111
HpyAV CCTTC 4 cut(s) 1111, 1351, 1504, 1555
HpyCH4III ACNGT 2 cut(s) 334, 454
HpyCH4IV ACGT 2 cut(s) 1158, 1527
HpyF10VI GCNNNNNNNGC 2 cut(s) 274, 278
HpyF3I CTNAG 6 cut(s) 104, 852, 954, 1101, 1136, 1238
HpySE526I ACGT 2 cut(s) 1158, 1527
Hsp92I GRCGYC 1 cut(s) 427
Hsp92II CATG 7 cut(s) 247, 281, 355, 365, 396, 424, 1316
HspAI GCGC 1 cut(s) 266
KspAI GTTAAC 1 cut(s) 687
Kzo9I GATC 9 cut(s) 15, 19, 607, 856, 958, 1009, 1207, 1309, 1564
LmnI GCTCC 3 cut(s) 413, 625, 1378
Lsp1109I GCAGC 8 cut(s) 87, 275, 801, 954, 1005, 1101, 1560, 1611
LweI GCATC 3 cut(s) 650, 1510, 1651
MaeI CTAG 8 cut(s) 345, 659, 770, 923, 974, 1172, 1274, 1304
MaeII ACGT 2 cut(s) 1158, 1527
MaeIII GTNAC 3 cut(s) 347, 733, 835
MalI GATC 9 cut(s) 17, 21, 609, 858, 960, 1011, 1209, 1311, 1566
MboI GATC 9 cut(s) 15, 19, 607, 856, 958, 1009, 1207, 1309, 1564
MboII GAAGA 6 cut(s) 131, 566, 636, 722, 1064, 1277
MflI RGATCY 5 cut(s) 607, 856, 1009, 1207, 1564
MhlI GDGCHC 1 cut(s) 901
MluCI AATT 2 cut(s) 369, 387
MlyI GAGTC 2 cut(s) 193, 1499
MseI TTAA 4 cut(s) 207, 222, 252, 686
MspA1I CMGCKG 1 cut(s) 851
MspI CCGG 1 cut(s) 651
MwoI GCNNNNNNNGC 2 cut(s) 274, 278
NdeII GATC 9 cut(s) 15, 19, 607, 856, 958, 1009, 1207, 1309, 1564
NheI GCTAGC 1 cut(s) 1171
NlaIII CATG 7 cut(s) 247, 281, 355, 365, 396, 424, 1316
NlaIV GGNNCC 4 cut(s) 807, 1209, 1380, 1584
NmeAIII GCCGAG 1 cut(s) 298
NmuCI GTSAC 3 cut(s) 347, 733, 835
NspI RCATGY 1 cut(s) 281
PaeI GCATGC 1 cut(s) 281
PaeR7I CTCGAG 1 cut(s) 669
PagI TCATGA 2 cut(s) 420, 1312
PfeI GAWTC 6 cut(s) 365, 761, 1106, 1349, 1400, 1451
PkrI GCNGC 8 cut(s) 102, 290, 791, 944, 995, 1091, 1550, 1601
PleI GAGTC 2 cut(s) 193, 1499
PpsI GAGTC 2 cut(s) 193, 1499
PpuMI RGGWCCY 1 cut(s) 806
Psp5II RGGWCCY 1 cut(s) 806
PspN4I GGNNCC 4 cut(s) 807, 1209, 1380, 1584
PspPI GGNCC 8 cut(s) 722, 773, 806, 824, 926, 1226, 1430, 1583
PspPPI RGGWCCY 1 cut(s) 806
PstI CTGCAG 3 cut(s) 293, 604, 697
PstNI CAGNNNCTG 1 cut(s) 202
PsuI RGATCY 5 cut(s) 607, 856, 1009, 1207, 1564
RsaI GTAC 2 cut(s) 328, 513
RsaNI GTAC 2 cut(s) 327, 512
SaqAI TTAA 4 cut(s) 207, 222, 252, 686
SatI GCNGC 8 cut(s) 101, 289, 790, 943, 994, 1090, 1549, 1600
Sau3AI GATC 9 cut(s) 15, 19, 607, 856, 958, 1009, 1207, 1309, 1564
Sau96I GGNCC 8 cut(s) 722, 773, 806, 824, 926, 1226, 1430, 1583
SchI GAGTC 2 cut(s) 193, 1499
SduI GDGCHC 1 cut(s) 901
SfaNI GCATC 3 cut(s) 650, 1510, 1651
SfcI CTRYAG 4 cut(s) 189, 289, 600, 693
Sfr274I CTCGAG 1 cut(s) 669
SinI GGWCC 2 cut(s) 722, 806
SlaI CTCGAG 1 cut(s) 669
SmlI CTYRAG 1 cut(s) 669
SmoI CTYRAG 1 cut(s) 669
SpeI ACTAGT 1 cut(s) 658
SphI GCATGC 1 cut(s) 281
Sse9I AATT 2 cut(s) 369, 387
SsiI CCGC 2 cut(s) 849, 1253
SspI AATATT 1 cut(s) 819
SspMI CTAG 8 cut(s) 345, 659, 770, 923, 974, 1172, 1274, 1304
StyI CCWWGG 5 cut(s) 1024, 1203, 1407, 1458, 1653
TaaI ACNGT 2 cut(s) 334, 454
TaiI ACGT 2 cut(s) 1161, 1530
TaqI TCGA 4 cut(s) 18, 48, 670, 1508
TasI AATT 2 cut(s) 369, 387
TatI WGTACW 1 cut(s) 326
TfiI GAWTC 6 cut(s) 365, 761, 1106, 1349, 1400, 1451
Tru1I TTAA 4 cut(s) 207, 222, 252, 686
Tru9I TTAA 4 cut(s) 207, 222, 252, 686
TscAI CASTG 2 cut(s) 242, 498
TseFI GTSAC 3 cut(s) 347, 733, 835
TseI GCWGC 8 cut(s) 100, 288, 789, 942, 993, 1089, 1548, 1599
Tsp45I GTSAC 3 cut(s) 347, 733, 835
TspDTI ATGAA 8 cut(s) 243, 260, 479, 559, 636, 1329, 1464, 1554
TspGWI ACGGA 1 cut(s) 12
TspRI CASTG 2 cut(s) 242, 498
VneI GTGCAC 1 cut(s) 897
VpaK11BI GGWCC 2 cut(s) 722, 806
XceI RCATGY 1 cut(s) 281
XhoI CTCGAG 1 cut(s) 669
XspI CTAG 8 cut(s) 345, 659, 770, 923, 974, 1172, 1274, 1304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.