pycom02g22700

Protein FAR1-RELATED SEQUENCE 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
N/A
Physical Location & Seq
Forward (+)
20898314 .. 20899042
729 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 729 bp
ATGCTCGAAAGCAATGGGCCCCGGTCTATTTTCATGGAACTGTCTGTGCTGCAATTTCCTCAAACCAAGGTGTTAGTATTTTTTTCCGATGGCTATGTGAATCAACAGACAAGTATACCTCTGTTATTTAAGCAGTATGAAAGGGCTCTTGAGCATTCATTAGAAAAAGAAATAGAAGCAGATTATGATACAATATGCACTGCTCCTGTACTGAAGACACCTTCACCAATGGAACAGCAGGCAGCTAACTTGTATACCAAAAAAGTTTTTGCAAAGTTTCAAGAGGAATTGGTTGAAACTTTTGTTTATACTGCAAATAAGATTGAGGGTGATGGGATAGTCCGTAAATACAGGGTTGCAAAATATGAACATGATGACAAGGCGTATATAGTCATATTAAATTTATCCGGAATAAAAGCAAGCTGCAGCTGTCAAATGTTTGAATATTCAGGCATCCTGTGTAGACATATTTTAACTGTCTTCACAGTAACAAATGTTCTTACCCTTTCATTACATTACATATTGAAGCGATGGACAAGAAATGCTAAATCCTGTGTTGGACTAGATGAACAGAGTTCAGATCTGCAAGGTATTGAGACATTGACCATGCGCTTTAACAATTTATGTCGGGAAGCCATTAAGTATGCAGAGGAAGGGGCAGTTGCTGTAGAGACTTACAATGCAGCAATGAGTGCTCTACAAGAGGTGGGAAAAAGATTGCTGTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COMM_domain FAR1 MULE SWIM

Protein Analysis

243

Amino Acids

27.5

Weight (kDa)

5.89

Isoelectric Point (pI)

47.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIM PF04434 133 - 163 1.5e-10 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 115, 254, 463
AccIII TCCGGA 1 cut(s) 407
AcsI RAATTY 1 cut(s) 400
AcuI CTGAAG 1 cut(s) 233
AfaI GTAC 1 cut(s) 210
AgsI TTSAA 4 cut(s) 281, 296, 443, 526
AluBI AGCT 3 cut(s) 245, 423, 429
AluI AGCT 3 cut(s) 245, 423, 429
Alw21I GWGCWC 1 cut(s) 697
Alw26I GTCTC 2 cut(s) 590, 665
AlwNI CAGNNNCTG 1 cut(s) 665
Aor13HI TCCGGA 1 cut(s) 407
AoxI GGCC 1 cut(s) 17
ApaI GGGCCC 1 cut(s) 21
ApeKI GCWGC 5 cut(s) 49, 242, 423, 426, 683
ApoI RAATTY 1 cut(s) 400
AspLEI GCGC 1 cut(s) 612
AspS9I GGNCC 2 cut(s) 17, 18
AsuC2I CCSGG 1 cut(s) 22
AsuHPI GGTGA 2 cut(s) 216, 341
BaeGI GKGCMC 1 cut(s) 21
BanII GRGCYC 2 cut(s) 21, 148
BbsI GAAGAC 2 cut(s) 221, 472
Bbv12I GWGCWC 1 cut(s) 697
BbvI GCAGC 5 cut(s) 36, 254, 410, 438, 695
BccI CCATC 3 cut(s) 83, 326, 525
BcnI CCSGG 1 cut(s) 22
BcoDI GTCTC 2 cut(s) 590, 665
BfaI CTAG 1 cut(s) 563
BfmI CTRYAG 2 cut(s) 424, 666
BglII AGATCT 1 cut(s) 580
BisI GCNGC 5 cut(s) 50, 243, 424, 427, 684
BlsI GCNGC 5 cut(s) 51, 244, 425, 428, 685
Bme1390I CCNGG 1 cut(s) 22
BmgT120I GGNCC 2 cut(s) 17, 18
BmiI GGNNCC 2 cut(s) 19, 20
BmrFI CCNGG 1 cut(s) 22
BmsI GCATC 1 cut(s) 462
BpiI GAAGAC 2 cut(s) 221, 472
BpuEI CTTGAG 1 cut(s) 170
BpuMI CCSGG 1 cut(s) 22
BsaJI CCNNGG 2 cut(s) 20, 66
BsaWI WCCGGW 1 cut(s) 407
Bse3DI GCAATG 2 cut(s) 19, 693
BseAI TCCGGA 1 cut(s) 407
BseDI CCNNGG 2 cut(s) 20, 66
BseGI GGATG 1 cut(s) 453
BseMI GCAATG 2 cut(s) 19, 693
BseSI GKGCMC 1 cut(s) 21
BseXI GCAGC 5 cut(s) 36, 254, 410, 438, 695
BshFI GGCC 1 cut(s) 19
BsiHKAI GWGCWC 1 cut(s) 697
BsiSI CCGG 2 cut(s) 22, 408
BsmAI GTCTC 2 cut(s) 590, 665
BsmI GAATGC 1 cut(s) 154
BsnI GGCC 1 cut(s) 19
Bsp120I GGGCCC 1 cut(s) 17
Bsp1286I GDGCHC 3 cut(s) 21, 148, 697
Bsp13I TCCGGA 1 cut(s) 407
Bsp143I GATC 1 cut(s) 580
BspANI GGCC 1 cut(s) 19
BspEI TCCGGA 1 cut(s) 407
BspLI GGNNCC 2 cut(s) 19, 20
BspMAI CTGCAG 1 cut(s) 428
BsrDI GCAATG 2 cut(s) 19, 693
BssECI CCNNGG 2 cut(s) 20, 66
BssMI GATC 1 cut(s) 580
BssNAI GTATAC 2 cut(s) 116, 255
BssT1I CCWWGG 1 cut(s) 66
Bst1107I GTATAC 2 cut(s) 116, 255
Bst4CI ACNGT 3 cut(s) 42, 478, 487
BstAPI GCANNNNNTGC 1 cut(s) 692
BstC8I GCNNGC 2 cut(s) 240, 421
BstF5I GGATG 1 cut(s) 453
BstHHI GCGC 1 cut(s) 612
BstKTI GATC 1 cut(s) 583
BstMAI GTCTC 2 cut(s) 590, 665
BstMBI GATC 1 cut(s) 580
BstMWI GCNNNNNNNGC 1 cut(s) 692
BstSCI CCNGG 1 cut(s) 20
BstSFI CTRYAG 2 cut(s) 424, 666
BstSLI GKGCMC 1 cut(s) 21
BstV1I GCAGC 5 cut(s) 36, 254, 410, 438, 695
BstV2I GAAGAC 2 cut(s) 221, 472
BstX2I RGATCY 1 cut(s) 580
BstYI RGATCY 1 cut(s) 580
BstZ17I GTATAC 2 cut(s) 116, 255
BsuRI GGCC 1 cut(s) 19
BtgZI GCGATG 1 cut(s) 544
BtsCI GGATG 1 cut(s) 453
BtsI GCAGTG 1 cut(s) 198
BtsIMutI CAGTG 1 cut(s) 198
Cac8I GCNNGC 2 cut(s) 240, 421
CaiI CAGNNNCTG 1 cut(s) 665
CfoI GCGC 1 cut(s) 612
Cfr13I GGNCC 2 cut(s) 17, 18
Csp6I GTAC 1 cut(s) 209
CviAII CATG 3 cut(s) 34, 371, 607
CviJI RGCY 7 cut(s) 19, 93, 146, 245, 423, 429, 635
CviKI_1 RGCY 7 cut(s) 19, 93, 146, 245, 423, 429, 635
CviQI GTAC 1 cut(s) 209
DpnI GATC 1 cut(s) 582
DpnII GATC 1 cut(s) 580
Eco130I CCWWGG 1 cut(s) 66
Eco24I GRGCYC 2 cut(s) 21, 148
Eco57I CTGAAG 1 cut(s) 233
EcoO109I RGGNCCY 1 cut(s) 18
EcoT14I CCWWGG 1 cut(s) 66
EcoT38I GRGCYC 2 cut(s) 21, 148
ErhI CCWWGG 1 cut(s) 66
FaeI CATG 3 cut(s) 37, 374, 610
FatI CATG 3 cut(s) 33, 370, 606
FblI GTMKAC 3 cut(s) 115, 254, 463
Fnu4HI GCNGC 5 cut(s) 50, 243, 424, 427, 684
FokI GGATG 1 cut(s) 440
FriOI GRGCYC 2 cut(s) 21, 148
Fsp4HI GCNGC 5 cut(s) 50, 243, 424, 427, 684
FspBI CTAG 1 cut(s) 563
GlaI GCGC 1 cut(s) 611
GluI GCNGC 5 cut(s) 50, 243, 424, 427, 684
HaeIII GGCC 1 cut(s) 19
HapII CCGG 2 cut(s) 22, 408
HhaI GCGC 1 cut(s) 612
Hin1II CATG 3 cut(s) 37, 374, 610
Hin6I GCGC 1 cut(s) 610
HinP1I GCGC 1 cut(s) 610
HinfI GANTC 1 cut(s) 100
HpaII CCGG 2 cut(s) 22, 408
HphI GGTGA 2 cut(s) 216, 341
Hpy166II GTNNAC 3 cut(s) 116, 255, 464
Hpy188I TCNGA 2 cut(s) 88, 580
Hpy188III TCNNGA 4 cut(s) 149, 281, 408, 629
Hpy8I GTNNAC 3 cut(s) 116, 255, 464
HpyAV CCTTC 2 cut(s) 231, 647
HpyCH4III ACNGT 3 cut(s) 42, 478, 487
HpyCH4V TGCA 9 cut(s) 52, 198, 272, 314, 359, 426, 586, 647, 683
HpyF10VI GCNNNNNNNGC 1 cut(s) 692
Hsp92II CATG 3 cut(s) 37, 374, 610
HspAI GCGC 1 cut(s) 610
Kpn2I TCCGGA 1 cut(s) 407
Kzo9I GATC 1 cut(s) 580
LmnI GCTCC 1 cut(s) 208
LpnPI CCDG 8 cut(s) 35, 219, 224, 337, 421, 435, 470, 565
Lsp1109I GCAGC 5 cut(s) 36, 254, 410, 438, 695
LweI GCATC 1 cut(s) 462
MaeI CTAG 1 cut(s) 563
MaeIII GTNAC 1 cut(s) 487
MalI GATC 1 cut(s) 582
MboI GATC 1 cut(s) 580
MboII GAAGA 2 cut(s) 226, 472
MflI RGATCY 1 cut(s) 580
MhlI GDGCHC 3 cut(s) 21, 148, 697
MluCI AATT 4 cut(s) 53, 287, 400, 619
MmeI TCCRAC 1 cut(s) 538
MnlI CCTC 6 cut(s) 69, 129, 277, 319, 643, 697
MroI TCCGGA 1 cut(s) 407
MseI TTAA 5 cut(s) 129, 398, 473, 615, 639
MspA1I CMGCKG 1 cut(s) 429
MspI CCGG 2 cut(s) 22, 408
MspR9I CCNGG 1 cut(s) 22
Mva1269I GAATGC 1 cut(s) 154
MwoI GCNNNNNNNGC 1 cut(s) 692
NciI CCSGG 1 cut(s) 22
NdeII GATC 1 cut(s) 580
NlaIII CATG 3 cut(s) 37, 374, 610
NlaIV GGNNCC 2 cut(s) 19, 20
PctI GAATGC 1 cut(s) 154
PfeI GAWTC 1 cut(s) 100
PkrI GCNGC 5 cut(s) 51, 244, 425, 428, 685
PspN4I GGNNCC 2 cut(s) 19, 20
PspOMI GGGCCC 1 cut(s) 17
PspPI GGNCC 2 cut(s) 17, 18
PsrI GAACNNNNNNTAC 2 cut(s) 480, 512
PstI CTGCAG 1 cut(s) 428
PstNI CAGNNNCTG 1 cut(s) 665
PsuI RGATCY 1 cut(s) 580
PvuII CAGCTG 1 cut(s) 429
RsaI GTAC 1 cut(s) 210
RsaNI GTAC 1 cut(s) 209
SaqAI TTAA 5 cut(s) 129, 398, 473, 615, 639
SatI GCNGC 5 cut(s) 50, 243, 424, 427, 684
Sau3AI GATC 1 cut(s) 580
Sau96I GGNCC 2 cut(s) 17, 18
ScrFI CCNGG 1 cut(s) 22
SduI GDGCHC 3 cut(s) 21, 148, 697
SetI ASST 8 cut(s) 72, 121, 223, 247, 425, 431, 592, 708
SfaNI GCATC 1 cut(s) 462
SfcI CTRYAG 2 cut(s) 424, 666
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
Sse9I AATT 4 cut(s) 53, 287, 400, 619
SspI AATATT 1 cut(s) 446
SspMI CTAG 1 cut(s) 563
StyD4I CCNGG 1 cut(s) 20
StyI CCWWGG 1 cut(s) 66
TaaI ACNGT 3 cut(s) 42, 478, 487
TaqI TCGA 1 cut(s) 6
TasI AATT 4 cut(s) 53, 287, 400, 619
TatI WGTACW 1 cut(s) 208
TfiI GAWTC 1 cut(s) 100
Tru1I TTAA 5 cut(s) 129, 398, 473, 615, 639
Tru9I TTAA 5 cut(s) 129, 398, 473, 615, 639
TscAI CASTG 1 cut(s) 205
TseI GCWGC 5 cut(s) 49, 242, 423, 426, 683
TspDTI ATGAA 6 cut(s) 22, 147, 153, 381, 498, 582
TspGWI ACGGA 1 cut(s) 332
TspRI CASTG 1 cut(s) 205
XapI RAATTY 1 cut(s) 400
XmiI GTMKAC 3 cut(s) 115, 254, 463
XspI CTAG 1 cut(s) 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.