pycom02g22900

AP-4 complex subunit

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
N/A
Physical Location & Seq
Forward (+)
21044060 .. 21048449
4390 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 474 bp
ATGAAGTTGATTGCCGAGGGATTTGGAGAGGATGATGATACTGCAGATAGTCAGTTGAGATCATCTGCGGTGGAGTCATATTTACGCATAATTGGTGAGCCAAAGCTTCCATCTGTATTTCTTCAGTTGTTATCTGTTGGGTTTTGGGGGAATATGGAACTGCTGATGGAAAATATTCTGCTTCCTATATCACTGGGAAGTTATGTGATGTTGCAGAGGCATATTCAAATGACGAATCTGTCAAGACAAGCTTATGCTGTTACAGCAATCATGAAAATATATACATTTGAAATATCCGCTCAGAGAAAAGTCGAGATCCTACCCGAGTGTCAGTCTTTGGTGGAAGAATTATCAGCTTCTCACTCAACAGATCTACAACAGCGTGCATATGAATTGCAAGCTGTCATTAGCTTAGATGCTCCTGCTGTTGAGATTATAATGCCGCTAGACGCAAGTTGTGAAGACATTGAGTGA

Protein Analysis

158

Amino Acids

17.54

Weight (kDa)

4.4

Isoelectric Point (pI)

65.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 437
AasI GACNNNNNNGTC 1 cut(s) 238
AccBSI CCGCTC 1 cut(s) 299
AciI CCGC 3 cut(s) 68, 297, 443
AclWI GGATC 1 cut(s) 310
AcuI CTGAAG 1 cut(s) 107
AgsI TTSAA 2 cut(s) 227, 290
AluBI AGCT 5 cut(s) 106, 251, 356, 401, 411
AluI AGCT 5 cut(s) 106, 251, 356, 401, 411
AlwI GGATC 1 cut(s) 310
Ama87I CYCGRG 1 cut(s) 323
Asp700I GAANNNNTTC 1 cut(s) 174
AsuHPI GGTGA 1 cut(s) 107
AvaI CYCGRG 1 cut(s) 323
BbsI GAAGAC 1 cut(s) 468
BccI CCATC 2 cut(s) 118, 160
BfaI CTAG 1 cut(s) 446
BfmI CTRYAG 1 cut(s) 42
BglII AGATCT 1 cut(s) 370
BisI GCNGC 1 cut(s) 443
BlsI GCNGC 1 cut(s) 444
BmeT110I CYCGRG 1 cut(s) 323
BmrI ACTGGG 1 cut(s) 203
BmsI GCATC 1 cut(s) 406
BmuI ACTGGG 1 cut(s) 203
BpiI GAAGAC 1 cut(s) 468
BsaJI CCNNGG 1 cut(s) 15
Bse1I ACTGG 1 cut(s) 198
BseDI CCNNGG 1 cut(s) 15
BseGI GGATG 1 cut(s) 37
BseMII CTCAG 1 cut(s) 314
BseNI ACTGG 1 cut(s) 198
BsiHKCI CYCGRG 1 cut(s) 323
BsoBI CYCGRG 1 cut(s) 323
Bsp143I GATC 3 cut(s) 59, 315, 370
BspACI CCGC 3 cut(s) 68, 297, 443
BspCNI CTCAG 1 cut(s) 313
BspHI TCATGA 1 cut(s) 270
BspMAI CTGCAG 1 cut(s) 46
BspPI GGATC 1 cut(s) 310
BsrBI CCGCTC 1 cut(s) 299
BsrI ACTGG 1 cut(s) 198
BssECI CCNNGG 1 cut(s) 15
BssMI GATC 3 cut(s) 59, 315, 370
BstC8I GCNNGC 2 cut(s) 384, 399
BstDEI CTNAG 2 cut(s) 300, 412
BstF5I GGATG 1 cut(s) 37
BstKTI GATC 3 cut(s) 62, 318, 373
BstMBI GATC 3 cut(s) 59, 315, 370
BstMWI GCNNNNNNNGC 1 cut(s) 263
BstSFI CTRYAG 1 cut(s) 42
BstV2I GAAGAC 1 cut(s) 468
BstX2I RGATCY 2 cut(s) 315, 370
BstYI RGATCY 2 cut(s) 315, 370
BtsCI GGATG 1 cut(s) 37
BtsIMutI CAGTG 1 cut(s) 191
Cac8I GCNNGC 2 cut(s) 384, 399
CciI TCATGA 1 cut(s) 270
CseI GACGC 1 cut(s) 458
CviAII CATG 1 cut(s) 271
CviJI RGCY 6 cut(s) 100, 106, 251, 356, 401, 411
CviKI_1 RGCY 6 cut(s) 100, 106, 251, 356, 401, 411
DdeI CTNAG 2 cut(s) 300, 412
DpnI GATC 3 cut(s) 61, 317, 372
DpnII GATC 3 cut(s) 59, 315, 370
DrdI GACNNNNNNGTC 1 cut(s) 238
DseDI GACNNNNNNGTC 1 cut(s) 238
Eco57I CTGAAG 1 cut(s) 107
Eco88I CYCGRG 1 cut(s) 323
FaeI CATG 1 cut(s) 274
FalI AAGNNNNNCTT 2 cut(s) 235, 267
FatI CATG 1 cut(s) 270
FauNDI CATATG 1 cut(s) 388
Fnu4HI GCNGC 1 cut(s) 443
FokI GGATG 1 cut(s) 44
Fsp4HI GCNGC 1 cut(s) 443
FspBI CTAG 1 cut(s) 446
GluI GCNGC 1 cut(s) 443
HgaI GACGC 1 cut(s) 458
Hin1II CATG 1 cut(s) 274
HindIII AAGCTT 2 cut(s) 104, 249
HinfI GANTC 2 cut(s) 74, 235
HphI GGTGA 1 cut(s) 107
Hpy188I TCNGA 1 cut(s) 303
Hpy188III TCNNGA 3 cut(s) 243, 271, 313
HpyCH4V TGCA 4 cut(s) 44, 214, 386, 397
HpyF10VI GCNNNNNNNGC 1 cut(s) 263
HpyF3I CTNAG 2 cut(s) 300, 412
Hsp92II CATG 1 cut(s) 274
Kzo9I GATC 3 cut(s) 59, 315, 370
LmnI GCTCC 1 cut(s) 424
LpnPI CCDG 2 cut(s) 179, 435
LweI GCATC 1 cut(s) 406
MaeI CTAG 1 cut(s) 446
MaeIII GTNAC 1 cut(s) 259
MalI GATC 3 cut(s) 61, 317, 372
MbiI CCGCTC 1 cut(s) 299
MboI GATC 3 cut(s) 59, 315, 370
MboII GAAGA 3 cut(s) 113, 356, 473
MflI RGATCY 2 cut(s) 315, 370
MluCI AATT 3 cut(s) 90, 347, 392
MlyI GAGTC 1 cut(s) 83
MnlI CCTC 3 cut(s) 10, 22, 210
MroXI GAANNNNTTC 1 cut(s) 174
MwoI GCNNNNNNNGC 1 cut(s) 263
NdeI CATATG 1 cut(s) 388
NdeII GATC 3 cut(s) 59, 315, 370
NlaIII CATG 1 cut(s) 274
NmeAIII GCCGAG 1 cut(s) 40
PagI TCATGA 1 cut(s) 270
PdmI GAANNNNTTC 1 cut(s) 174
PfeI GAWTC 1 cut(s) 235
PkrI GCNGC 1 cut(s) 444
PleI GAGTC 1 cut(s) 82
PpsI GAGTC 1 cut(s) 82
PsiI TTATAA 1 cut(s) 437
PstI CTGCAG 1 cut(s) 46
PsuI RGATCY 2 cut(s) 315, 370
SatI GCNGC 1 cut(s) 443
Sau3AI GATC 3 cut(s) 59, 315, 370
SchI GAGTC 1 cut(s) 83
SetI ASST 5 cut(s) 108, 253, 358, 403, 413
SfaNI GCATC 1 cut(s) 406
SfcI CTRYAG 1 cut(s) 42
Sse9I AATT 3 cut(s) 90, 347, 392
SsiI CCGC 3 cut(s) 68, 297, 443
SspI AATATT 1 cut(s) 175
SspMI CTAG 1 cut(s) 446
TaqI TCGA 1 cut(s) 312
TasI AATT 3 cut(s) 90, 347, 392
TauI GCSGC 1 cut(s) 445
TfiI GAWTC 1 cut(s) 235
TscAI CASTG 1 cut(s) 198
TspDTI ATGAA 3 cut(s) 17, 287, 405
TspRI CASTG 1 cut(s) 198
XmnI GAANNNNTTC 1 cut(s) 174
XspI CTAG 1 cut(s) 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.