pycom02g23570

Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
N/A
Physical Location & Seq
Reverse (-)
21665711 .. 21666255
545 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 498 bp
ATGCCATTTAGCCTAATCTTAGGACTCACCAAACTGTCCTTGCTAATATTTCTCTTCTATCTGCTCATACATGTAACAAAGTGCCAAAGGCCCAGAGAAACCACCATAGAGTTTTACTTGCAAAACTTGGCATCTGGACCTGATGCCACGGTTTTCCCTGTCACAGGCCTCAAAGGCACCTCAGTCTTTCACCTCATTTTGATATCAACCCAAGTTGGTCGAGCTCAAGGCATTCTAGTGGCCTCAGCCTTGTCTGGCTCCAATGTGCATGTCTCAGTGTCAATTGCATTCACCAATGGGGATACAATGGTAGCATGCCTTGAGATACAAGGCATCAGCCGCCAATATGAGAGGTATAAAGAGCTCTCGGTGGTTGCAGGGACTGGAACATTCAGATATGCAAGGGACCTTGCTACCCTTGAGACAATTTTCCATGATGATATGACCTCCTACTCAGTCGTACGACGCACCATTAGATTGCTTCTAAATACGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

166

Amino Acids

18.22

Weight (kDa)

9.03

Isoelectric Point (pI)

28.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dirigent PF03018 35 - 159 1e-17 Dirigent-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 176
AciI CCGC 1 cut(s) 340
AfaI GTAC 1 cut(s) 462
AfiI CCNNNNNNNGG 1 cut(s) 164
AflIII ACRYGT 1 cut(s) 70
AluBI AGCT 2 cut(s) 224, 364
AluI AGCT 2 cut(s) 224, 364
Alw21I GWGCWC 2 cut(s) 226, 366
Alw26I GTCTC 2 cut(s) 277, 416
AlwNI CAGNNNCTG 1 cut(s) 383
AoxI GGCC 3 cut(s) 89, 166, 240
AspS9I GGNCC 3 cut(s) 90, 137, 406
AsuHPI GGTGA 3 cut(s) 19, 182, 283
AvaII GGWCC 2 cut(s) 137, 406
BaeI ACNNNNGTAYC 2 cut(s) 294, 327
BanI GGYRCC 1 cut(s) 176
BanII GRGCYC 2 cut(s) 226, 366
Bbv12I GWGCWC 2 cut(s) 226, 366
BbvCI CCTCAGC 1 cut(s) 244
BciVI GTATCC 1 cut(s) 295
BcoDI GTCTC 2 cut(s) 277, 416
BfaI CTAG 1 cut(s) 236
BfuI GTATCC 1 cut(s) 295
BglI GCCNNNNNGGC 1 cut(s) 174
BisI GCNGC 1 cut(s) 340
BlsI GCNGC 1 cut(s) 341
Bme18I GGWCC 2 cut(s) 137, 406
BmgT120I GGNCC 3 cut(s) 90, 137, 406
BmiI GGNNCC 3 cut(s) 178, 259, 407
BmsI GCATC 3 cut(s) 133, 140, 342
Bpu10I CCTNAGC 1 cut(s) 244
BpuEI CTTGAG 3 cut(s) 210, 341, 440
BsaJI CCNNGG 1 cut(s) 147
Bsc4I CCNNNNNNNGG 1 cut(s) 164
Bse1I ACTGG 1 cut(s) 388
BseDI CCNNGG 1 cut(s) 147
BseLI CCNNNNNNNGG 1 cut(s) 164
BseMII CTCAG 4 cut(s) 195, 258, 288, 468
BseNI ACTGG 1 cut(s) 388
BshFI GGCC 3 cut(s) 91, 168, 242
BshNI GGYRCC 1 cut(s) 176
BsiHKAI GWGCWC 2 cut(s) 226, 366
BsiWI CGTACG 1 cut(s) 460
BslFI GGGAC 2 cut(s) 394, 419
BslI CCNNNNNNNGG 1 cut(s) 164
BsmAI GTCTC 2 cut(s) 277, 416
BsmFI GGGAC 2 cut(s) 394, 419
BsmI GAATGC 2 cut(s) 231, 287
BsnI GGCC 3 cut(s) 91, 168, 242
Bsp1286I GDGCHC 2 cut(s) 226, 366
BspACI CCGC 1 cut(s) 340
BspANI GGCC 3 cut(s) 91, 168, 242
BspCNI CTCAG 4 cut(s) 194, 257, 287, 467
BspLI GGNNCC 3 cut(s) 178, 259, 407
BspT107I GGYRCC 1 cut(s) 176
BsrI ACTGG 1 cut(s) 388
BssECI CCNNGG 1 cut(s) 147
Bst4CI ACNGT 2 cut(s) 36, 151
Bst6I CTCTTC 1 cut(s) 59
BstC8I GCNNGC 1 cut(s) 316
BstDEI CTNAG 5 cut(s) 19, 181, 244, 274, 454
BstDSI CCRYGG 1 cut(s) 147
BstENI CCTNNNNNAGG 1 cut(s) 162
BstMAI GTCTC 2 cut(s) 277, 416
BstMWI GCNNNNNNNGC 2 cut(s) 174, 339
BstNSI RCATGY 3 cut(s) 74, 272, 318
BsuI GTATCC 1 cut(s) 295
BsuRI GGCC 3 cut(s) 91, 168, 242
BtgI CCRYGG 1 cut(s) 147
BtsIMutI CAGTG 1 cut(s) 282
Cac8I GCNNGC 1 cut(s) 316
CaiI CAGNNNCTG 1 cut(s) 383
Cfr13I GGNCC 3 cut(s) 90, 137, 406
CseI GACGC 1 cut(s) 474
Csp6I GTAC 1 cut(s) 461
CviAII CATG 4 cut(s) 71, 269, 315, 434
CviJI RGCY 9 cut(s) 12, 91, 168, 224, 242, 248, 258, 339, 364
CviKI_1 RGCY 9 cut(s) 12, 91, 168, 224, 242, 248, 258, 339, 364
CviQI GTAC 1 cut(s) 461
DdeI CTNAG 5 cut(s) 19, 181, 244, 274, 454
Eam1104I CTCTTC 1 cut(s) 59
EarI CTCTTC 1 cut(s) 59
Ecl136II GAGCTC 2 cut(s) 224, 364
Eco147I AGGCCT 1 cut(s) 168
Eco24I GRGCYC 2 cut(s) 226, 366
Eco32I GATATC 1 cut(s) 204
Eco47I GGWCC 2 cut(s) 137, 406
Eco53kI GAGCTC 2 cut(s) 224, 364
EcoICRI GAGCTC 2 cut(s) 224, 364
EcoNI CCTNNNNNAGG 1 cut(s) 162
EcoO109I RGGNCCY 1 cut(s) 406
EcoRV GATATC 1 cut(s) 204
EcoT38I GRGCYC 2 cut(s) 226, 366
FaeI CATG 4 cut(s) 74, 272, 318, 437
FaqI GGGAC 2 cut(s) 394, 419
FatI CATG 4 cut(s) 70, 268, 314, 433
Fnu4HI GCNGC 1 cut(s) 340
FriOI GRGCYC 2 cut(s) 226, 366
Fsp4HI GCNGC 1 cut(s) 340
FspBI CTAG 1 cut(s) 236
GluI GCNGC 1 cut(s) 340
HaeIII GGCC 3 cut(s) 91, 168, 242
HgaI GACGC 1 cut(s) 474
Hin1II CATG 4 cut(s) 74, 272, 318, 437
HinfI GANTC 1 cut(s) 24
HphI GGTGA 3 cut(s) 19, 182, 283
Hpy188I TCNGA 1 cut(s) 395
Hpy188III TCNNGA 1 cut(s) 135
Hpy99I CGWCG 1 cut(s) 468
HpyCH4III ACNGT 2 cut(s) 36, 151
HpyCH4V TGCA 5 cut(s) 121, 268, 287, 377, 401
HpyF10VI GCNNNNNNNGC 2 cut(s) 174, 339
HpyF3I CTNAG 5 cut(s) 19, 181, 244, 274, 454
Hsp92II CATG 4 cut(s) 74, 272, 318, 437
LmnI GCTCC 1 cut(s) 263
LpnPI CCDG 8 cut(s) 106, 120, 150, 153, 171, 240, 363, 369
LweI GCATC 3 cut(s) 133, 140, 342
MaeI CTAG 1 cut(s) 236
MaeIII GTNAC 2 cut(s) 73, 160
MboII GAAGA 1 cut(s) 46
MfeI CAATTG 1 cut(s) 282
MhlI GDGCHC 2 cut(s) 226, 366
MluCI AATT 2 cut(s) 282, 426
MlyI GAGTC 1 cut(s) 18
MnlI CCTC 6 cut(s) 179, 190, 203, 253, 345, 457
MslI CAYNNNNRTG 1 cut(s) 236
MunI CAATTG 1 cut(s) 282
Mva1269I GAATGC 2 cut(s) 231, 287
MwoI GCNNNNNNNGC 2 cut(s) 174, 339
NlaIII CATG 4 cut(s) 74, 272, 318, 437
NlaIV GGNNCC 3 cut(s) 178, 259, 407
NmuCI GTSAC 1 cut(s) 160
NspI RCATGY 3 cut(s) 74, 272, 318
PaeI GCATGC 1 cut(s) 318
PceI AGGCCT 1 cut(s) 168
PciI ACATGT 1 cut(s) 70
PctI GAATGC 2 cut(s) 231, 287
Pfl23II CGTACG 1 cut(s) 460
PkrI GCNGC 1 cut(s) 341
PleI GAGTC 1 cut(s) 18
PpsI GAGTC 1 cut(s) 18
PpuMI RGGWCCY 1 cut(s) 406
PscI ACATGT 1 cut(s) 70
Psp124BI GAGCTC 2 cut(s) 226, 366
Psp5II RGGWCCY 1 cut(s) 406
PspLI CGTACG 1 cut(s) 460
PspN4I GGNNCC 3 cut(s) 178, 259, 407
PspPI GGNCC 3 cut(s) 90, 137, 406
PspPPI RGGWCCY 1 cut(s) 406
PstNI CAGNNNCTG 1 cut(s) 383
RsaI GTAC 1 cut(s) 462
RsaNI GTAC 1 cut(s) 461
RseI CAYNNNNRTG 1 cut(s) 236
SacI GAGCTC 2 cut(s) 226, 366
SatI GCNGC 1 cut(s) 340
Sau96I GGNCC 3 cut(s) 90, 137, 406
SchI GAGTC 1 cut(s) 18
SduI GDGCHC 2 cut(s) 226, 366
SetI ASST 8 cut(s) 142, 182, 195, 226, 356, 366, 411, 449
SfaNI GCATC 3 cut(s) 133, 140, 342
SinI GGWCC 2 cut(s) 137, 406
SmiMI CAYNNNNRTG 1 cut(s) 236
SmlI CTYRAG 3 cut(s) 225, 320, 419
SmoI CTYRAG 3 cut(s) 225, 320, 419
SphI GCATGC 1 cut(s) 318
Sse9I AATT 2 cut(s) 282, 426
SseBI AGGCCT 1 cut(s) 168
SsiI CCGC 1 cut(s) 340
SspI AATATT 1 cut(s) 48
SspMI CTAG 1 cut(s) 236
SstI GAGCTC 2 cut(s) 226, 366
StuI AGGCCT 1 cut(s) 168
TaaI ACNGT 2 cut(s) 36, 151
TaqI TCGA 1 cut(s) 220
TasI AATT 2 cut(s) 282, 426
TauI GCSGC 1 cut(s) 342
TscAI CASTG 1 cut(s) 282
TseFI GTSAC 1 cut(s) 160
Tsp45I GTSAC 1 cut(s) 160
TspRI CASTG 1 cut(s) 282
VpaK11BI GGWCC 2 cut(s) 137, 406
XagI CCTNNNNNAGG 1 cut(s) 162
XceI RCATGY 3 cut(s) 74, 272, 318
XspI CTAG 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.