pycom02g23720

disease resistance

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
N/A
Physical Location & Seq
Reverse (-)
21854011 .. 21854469
459 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 459 bp
ATGGAGGGTCTTCGATATCTTGTGTCATTTGCAGAAGGGGGTTTGCCTCCCAACCTACAAGAATTTAGAGTCATTCATTGTAACACACTCAAACCTTCAGAGGAGTGGGGTTTGCACAGACTTGGCTCCCTTAAAAAATTCACGAATTGGGGAAGTGAGGATCCATTAGAGATGTTGCTCAACGATCATCTGCTTCCTACCACTCTTATCACTCTCGGTATTTGTCATCTATCAAGTCCAAAATCTTTGGATGGAAAGGGACTTCAACACCTCACTTCTCTTCAGAACCTAGGATTTTGGTGGTGCTCCAGTCTCAAATCTCTCCCAGGATCGGTGCTTCAACACTCACTTCTCTTCAAAATCTACGAATTTTTGGGTCTCCGAGGCTCCAATTCCTGCCAGAAGTGGGCTTGCCGGAATCTCTTTCTTTGCTGCACATCATTGGCTGCCCCTCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

153

Amino Acids

17.05

Weight (kDa)

8.52

Isoelectric Point (pI)

39.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 155, 168, 337
AcsI RAATTY 3 cut(s) 62, 137, 368
AcuI CTGAAG 2 cut(s) 81, 266
AfiI CCNNNNNNNGG 2 cut(s) 331, 406
AgsI TTSAA 3 cut(s) 266, 341, 358
AjnI CCWGG 1 cut(s) 325
Alw21I GWGCWC 1 cut(s) 308
Alw26I GTCTC 2 cut(s) 317, 383
AlwI GGATC 3 cut(s) 155, 168, 337
ApeKI GCWGC 2 cut(s) 432, 446
ApoI RAATTY 3 cut(s) 62, 137, 368
AspA2I CCTAGG 1 cut(s) 289
AvrII CCTAGG 1 cut(s) 289
BamHI GGATCC 1 cut(s) 160
BbsI GAAGAC 1 cut(s) 2
Bbv12I GWGCWC 1 cut(s) 308
BbvI GCAGC 2 cut(s) 419, 433
BccI CCATC 1 cut(s) 245
BciT130I CCWGG 1 cut(s) 327
BcoDI GTCTC 2 cut(s) 317, 383
BfaI CTAG 1 cut(s) 290
BisI GCNGC 2 cut(s) 433, 447
BlnI CCTAGG 1 cut(s) 289
BlsI GCNGC 2 cut(s) 434, 448
Bme1390I CCNGG 1 cut(s) 327
BmiI GGNNCC 3 cut(s) 127, 162, 388
BmrFI CCNGG 1 cut(s) 327
BpiI GAAGAC 1 cut(s) 2
BpmI CTGGAG 1 cut(s) 292
BsaI GGTCTC 1 cut(s) 383
BsaJI CCNNGG 3 cut(s) 289, 325, 382
Bsc4I CCNNNNNNNGG 2 cut(s) 331, 406
Bse1I ACTGG 1 cut(s) 309
BseBI CCWGG 1 cut(s) 327
BseDI CCNNGG 3 cut(s) 289, 325, 382
BseGI GGATG 1 cut(s) 256
BseLI CCNNNNNNNGG 2 cut(s) 331, 406
BseNI ACTGG 1 cut(s) 309
BseRI GAGGAG 1 cut(s) 116
BseXI GCAGC 2 cut(s) 419, 433
BsgI GTGCAG 1 cut(s) 418
BsiHKAI GWGCWC 1 cut(s) 308
BsiSI CCGG 1 cut(s) 415
BslFI GGGAC 1 cut(s) 273
BslI CCNNNNNNNGG 2 cut(s) 331, 406
BsmAI GTCTC 2 cut(s) 317, 383
BsmFI GGGAC 1 cut(s) 273
Bso31I GGTCTC 1 cut(s) 383
Bsp1286I GDGCHC 1 cut(s) 308
Bsp143I GATC 3 cut(s) 160, 184, 329
BspLI GGNNCC 3 cut(s) 127, 162, 388
BspPI GGATC 3 cut(s) 155, 168, 337
BspTNI GGTCTC 1 cut(s) 383
BsrI ACTGG 1 cut(s) 309
BssECI CCNNGG 3 cut(s) 289, 325, 382
BssMI GATC 3 cut(s) 160, 184, 329
BssT1I CCWWGG 1 cut(s) 289
Bst2UI CCWGG 1 cut(s) 327
Bst6I CTCTTC 2 cut(s) 285, 359
BstC8I GCNNGC 1 cut(s) 412
BstF5I GGATG 1 cut(s) 256
BstKTI GATC 3 cut(s) 163, 187, 332
BstMAI GTCTC 2 cut(s) 317, 383
BstMBI GATC 3 cut(s) 160, 184, 329
BstNI CCWGG 1 cut(s) 327
BstSCI CCNGG 1 cut(s) 325
BstV1I GCAGC 2 cut(s) 419, 433
BstV2I GAAGAC 1 cut(s) 2
BstX2I RGATCY 1 cut(s) 160
BstYI RGATCY 1 cut(s) 160
BtsCI GGATG 1 cut(s) 256
Cac8I GCNNGC 1 cut(s) 412
CviJI RGCY 4 cut(s) 126, 387, 410, 446
CviKI_1 RGCY 4 cut(s) 126, 387, 410, 446
DpnI GATC 3 cut(s) 162, 186, 331
DpnII GATC 3 cut(s) 160, 184, 329
Eam1104I CTCTTC 2 cut(s) 285, 359
EarI CTCTTC 2 cut(s) 285, 359
Eco130I CCWWGG 1 cut(s) 289
Eco31I GGTCTC 1 cut(s) 383
Eco32I GATATC 1 cut(s) 17
Eco57I CTGAAG 2 cut(s) 81, 266
EcoRII CCWGG 1 cut(s) 325
EcoRV GATATC 1 cut(s) 17
EcoT14I CCWWGG 1 cut(s) 289
ErhI CCWWGG 1 cut(s) 289
FaqI GGGAC 1 cut(s) 273
Fnu4HI GCNGC 2 cut(s) 433, 447
FokI GGATG 1 cut(s) 263
Fsp4HI GCNGC 2 cut(s) 433, 447
FspBI CTAG 1 cut(s) 290
GluI GCNGC 2 cut(s) 433, 447
GsuI CTGGAG 1 cut(s) 292
HapII CCGG 1 cut(s) 415
HinfI GANTC 2 cut(s) 69, 418
HpaII CCGG 1 cut(s) 415
Hpy188I TCNGA 3 cut(s) 100, 285, 383
Hpy188III TCNNGA 1 cut(s) 142
HpyAV CCTTC 2 cut(s) 29, 105
HpyCH4V TGCA 3 cut(s) 32, 115, 435
Kzo9I GATC 3 cut(s) 160, 184, 329
LmnI GCTCC 3 cut(s) 131, 311, 392
LpnPI CCDG 6 cut(s) 312, 322, 339, 409, 413, 428
Lsp1109I GCAGC 2 cut(s) 419, 433
MaeI CTAG 1 cut(s) 290
MaeIII GTNAC 1 cut(s) 80
MalI GATC 3 cut(s) 162, 186, 331
MboI GATC 3 cut(s) 160, 184, 329
MboII GAAGA 2 cut(s) 272, 346
MflI RGATCY 1 cut(s) 160
MhlI GDGCHC 1 cut(s) 308
MluCI AATT 5 cut(s) 62, 137, 145, 368, 391
MlyI GAGTC 1 cut(s) 78
MnlI CCTC 5 cut(s) 57, 94, 151, 281, 377
MseI TTAA 1 cut(s) 132
MspI CCGG 1 cut(s) 415
MspR9I CCNGG 1 cut(s) 327
MvaI CCWGG 1 cut(s) 327
NdeII GATC 3 cut(s) 160, 184, 329
NlaIV GGNNCC 3 cut(s) 127, 162, 388
PfeI GAWTC 1 cut(s) 418
PkrI GCNGC 2 cut(s) 434, 448
PleI GAGTC 1 cut(s) 77
PpsI GAGTC 1 cut(s) 77
Psp6I CCWGG 1 cut(s) 325
PspGI CCWGG 1 cut(s) 325
PspN4I GGNNCC 3 cut(s) 127, 162, 388
PsuI RGATCY 1 cut(s) 160
SaqAI TTAA 1 cut(s) 132
SatI GCNGC 2 cut(s) 433, 447
Sau3AI GATC 3 cut(s) 160, 184, 329
SchI GAGTC 1 cut(s) 78
ScrFI CCNGG 1 cut(s) 327
SduI GDGCHC 1 cut(s) 308
SetI ASST 4 cut(s) 57, 97, 273, 291
Sse9I AATT 5 cut(s) 62, 137, 145, 368, 391
SspMI CTAG 1 cut(s) 290
StyD4I CCNGG 1 cut(s) 325
StyI CCWWGG 1 cut(s) 289
TaqI TCGA 1 cut(s) 13
TasI AATT 5 cut(s) 62, 137, 145, 368, 391
TfiI GAWTC 1 cut(s) 418
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
TseI GCWGC 2 cut(s) 432, 446
TspDTI ATGAA 1 cut(s) 65
XapI RAATTY 3 cut(s) 62, 137, 368
XmaJI CCTAGG 1 cut(s) 289
XspI CTAG 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.