Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

21946744 .. 21947592

Gene Structure 849 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGCAACGCTTTGTTTCTTTCGCTTCTGGCTTGGTTTCGGGATTGGTGGTGACTATCCCCTTTCAGCTACGATCATGTCCGAGTACGCTAACAAAAAGACTCGCGGCGCCTTCATCGCTGCTGTGTTTGCCATGCAGGGGTTCGGAATTCTGGCTGCTGGGATTGTTTCTATAGTTGTTTCAAGCGCGTTTGATCGCGCATACAAGGCACCCCCTTACTCCGTCGATCCAAATGCTTCTCTTGTTCCTCAAGCGGATTATGTTTGGCGTATTATTTTGATGTTTGGAGCCATCCCTGCTGCTCTTACTTATTTCTGGCGATTGAAAATGCCGGAGACAGCTCGGTACACCGCCCTTGTTGCCCGTAATGCAAAACAAGCTGCATCGGACATGTCCAAGGTGTTACAAGTGAGCCTCGAAGCCGAAGAGGTTAATGTCAAGGAAGATTCGGACAACACATTTGGCTTGTTCACCAAGGAATTTGCTCGCCGACACGGGCTTCACCTCCTTGGTACCACCACCACTTGGTTCTTATTTGACATAGCGTACTACAGCCAGAATCTTTTCCAAAAGGACATATTCAGCGCAATCGGGTGGATTCCAGCCGCAGAAACCATGAACGGTATTGAAGAGCCCTACACAATTGCAAGGGCACAAACACTTACAGCATTGTGCAGTCTTGTTCCGGGGTATTGGTTCACGGTGGCATTCATCGATCGGATTGGAAGGTTTGCGATCCAATTAATGGGTTTCTTTTTCATGACAGTATTCATGTTTGCCCTTGCAATTCCTTACCATCATTGGACTTTGAAACCGAACAGAATAGGGTTTGTGGTATTTGTTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005315 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006950 GO:0007154 GO:0008150 GO:0008509 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0015075 GO:0015103 GO:0015114 GO:0015291 GO:0015318 GO:0015698 GO:0016020 GO:0016021 GO:0016036 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034220 GO:0035435 GO:0042594 GO:0044425 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0071496 GO:0071944 GO:0098656 GO:0098660 GO:0098661 GO:1901683 GO:1901684

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

283

Amino Acids

31.68

Weight (kDa)

8.45

Isoelectric Point (pI)

31.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	3 - 280	1.3e-20	Sugar (and other) transporter
MFS_1	PF07690	3 - 263	1.1e-10	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	512
AccB1I	GGYRCC	3 cut(s)	107, 208, 512
AccB7I	CCANNNNNTGG	2 cut(s)	525, 745
AccII	CGCG	3 cut(s)	105, 188, 198
AciI	CCGC	4 cut(s)	105, 254, 351, 606
AclWI	GGATC	2 cut(s)	221, 730
AcsI	RAATTY	2 cut(s)	147, 479
AcyI	GRCGYC	1 cut(s)	108
AfaI	GTAC	4 cut(s)	86, 347, 514, 548
AfiI	CCNNNNNNNGG	3 cut(s)	138, 525, 745
AflIII	ACRYGT	1 cut(s)	390
AgsI	TTSAA	5 cut(s)	183, 325, 629, 811, 845
AluBI	AGCT	3 cut(s)	68, 341, 380
AluI	AGCT	3 cut(s)	68, 341, 380
Alw26I	GTCTC	1 cut(s)	329
AlwI	GGATC	2 cut(s)	221, 730
ApeKI	GCWGC	4 cut(s)	119, 155, 299, 380
ApoI	RAATTY	2 cut(s)	147, 479
ArsI	GACNNNNNNTTYG	2 cut(s)	443, 475
AseI	ATTAAT	1 cut(s)	743
Asp700I	GAANNNNTTC	1 cut(s)	563
Asp718I	GGTACC	1 cut(s)	512
AspLEI	GCGC	4 cut(s)	110, 188, 200, 587
AsuC2I	CCSGG	1 cut(s)	687
AsuHPI	GGTGA	3 cut(s)	62, 463, 494
BaeGI	GKGCMC	1 cut(s)	655
BanI	GGYRCC	3 cut(s)	107, 208, 512
BanII	GRGCYC	1 cut(s)	636
BbvI	GCAGC	4 cut(s)	106, 142, 286, 367
BccI	CCATC	2 cut(s)	299, 804
BcgI	CGANNNNNNTGC	2 cut(s)	215, 249
BcnI	CCSGG	1 cut(s)	687
BcoDI	GTCTC	1 cut(s)	329
BfmI	CTRYAG	2 cut(s)	171, 550
BfoI	RGCGCY	1 cut(s)	111
BisI	GCNGC	6 cut(s)	106, 120, 156, 300, 381, 606
BlsI	GCNGC	6 cut(s)	107, 121, 157, 301, 382, 607
Bme1390I	CCNGG	1 cut(s)	687
BmiI	GGNNCC	4 cut(s)	109, 210, 289, 514
BmrFI	CCNGG	1 cut(s)	687
BmsI	GCATC	1 cut(s)	392
BpuEI	CTTGAG	1 cut(s)	234
BpuMI	CCSGG	1 cut(s)	687
Bsa29I	ATCGAT	1 cut(s)	714
BsaHI	GRCGYC	1 cut(s)	108
BsaJI	CCNNGG	4 cut(s)	396, 474, 508, 686
Bsc4I	CCNNNNNNNGG	3 cut(s)	138, 525, 745
BseCI	ATCGAT	1 cut(s)	714
BseDI	CCNNGG	4 cut(s)	396, 474, 508, 686
BseGI	GGATG	1 cut(s)	291
BseLI	CCNNNNNNNGG	3 cut(s)	138, 525, 745
BseSI	GKGCMC	1 cut(s)	655
BseXI	GCAGC	4 cut(s)	106, 142, 286, 367
BseYI	CCCAGC	1 cut(s)	158
BsgI	GTGCAG	1 cut(s)	694
Bsh1236I	CGCG	3 cut(s)	105, 188, 198
Bsh1285I	CGRYCG	1 cut(s)	718
BshNI	GGYRCC	3 cut(s)	107, 208, 512
BshVI	ATCGAT	1 cut(s)	714
BsiEI	CGRYCG	1 cut(s)	718
BsiSI	CCGG	2 cut(s)	332, 686
BslI	CCNNNNNNNGG	3 cut(s)	138, 525, 745
BsmAI	GTCTC	1 cut(s)	329
BsmI	GAATGC	1 cut(s)	707
Bsp1286I	GDGCHC	2 cut(s)	636, 655
Bsp143I	GATC	5 cut(s)	72, 193, 226, 715, 735
BspACI	CCGC	4 cut(s)	105, 254, 351, 606
BspDI	ATCGAT	1 cut(s)	714
BspFNI	CGCG	3 cut(s)	105, 188, 198
BspHI	TCATGA	1 cut(s)	759
BspLI	GGNNCC	4 cut(s)	109, 210, 289, 514
BspPI	GGATC	2 cut(s)	221, 730
BspQI	GCTCTTC	1 cut(s)	624
BspT107I	GGYRCC	3 cut(s)	107, 208, 512
BssECI	CCNNGG	4 cut(s)	396, 474, 508, 686
BssMI	GATC	5 cut(s)	72, 193, 226, 715, 735
BssNI	GRCGYC	1 cut(s)	108
BssT1I	CCWWGG	3 cut(s)	396, 474, 508
Bst4CI	ACNGT	3 cut(s)	623, 703, 766
Bst6I	CTCTTC	2 cut(s)	420, 624
BstACI	GRCGYC	1 cut(s)	108
BstC8I	GCNNGC	1 cut(s)	487
BstF5I	GGATG	1 cut(s)	291
BstFNI	CGCG	3 cut(s)	105, 188, 198
BstH2I	RGCGCY	1 cut(s)	111
BstHHI	GCGC	4 cut(s)	110, 188, 200, 587
BstKTI	GATC	5 cut(s)	75, 196, 229, 718, 738
BstMAI	GTCTC	1 cut(s)	329
BstMBI	GATC	5 cut(s)	72, 193, 226, 715, 735
BstMCI	CGRYCG	1 cut(s)	718
BstMWI	GCNNNNNNNGC	7 cut(s)	116, 128, 206, 296, 359, 368, 377
BstNSI	RCATGY	1 cut(s)	394
BstSCI	CCNGG	1 cut(s)	685
BstSFI	CTRYAG	2 cut(s)	171, 550
BstSLI	GKGCMC	1 cut(s)	655
BstUI	CGCG	3 cut(s)	105, 188, 198
BstV1I	GCAGC	4 cut(s)	106, 142, 286, 367
Bsu15I	ATCGAT	1 cut(s)	714
BsuTUI	ATCGAT	1 cut(s)	714
BtgZI	GCGATG	1 cut(s)	100
BtsCI	GGATG	1 cut(s)	291
Cac8I	GCNNGC	1 cut(s)	487
CciI	TCATGA	1 cut(s)	759
CfoI	GCGC	4 cut(s)	110, 188, 200, 587
ClaI	ATCGAT	1 cut(s)	714
Csp6I	GTAC	4 cut(s)	85, 346, 513, 547
CviAII	CATG	6 cut(s)	76, 133, 391, 616, 760, 772
CviQI	GTAC	4 cut(s)	85, 346, 513, 547
DinI	GGCGCC	1 cut(s)	109
DpnI	GATC	5 cut(s)	74, 195, 228, 717, 737
DpnII	GATC	5 cut(s)	72, 193, 226, 715, 735
Eam1104I	CTCTTC	2 cut(s)	420, 624
EarI	CTCTTC	2 cut(s)	420, 624
Eco130I	CCWWGG	3 cut(s)	396, 474, 508
Eco24I	GRGCYC	1 cut(s)	636
EcoRI	GAATTC	1 cut(s)	147
EcoT14I	CCWWGG	3 cut(s)	396, 474, 508
EcoT38I	GRGCYC	1 cut(s)	636
EgeI	GGCGCC	1 cut(s)	109
EheI	GGCGCC	1 cut(s)	109
ErhI	CCWWGG	3 cut(s)	396, 474, 508
FaeI	CATG	6 cut(s)	79, 136, 394, 619, 763, 775
FatI	CATG	6 cut(s)	75, 132, 390, 615, 759, 771
Fnu4HI	GCNGC	6 cut(s)	106, 120, 156, 300, 381, 606
FokI	GGATG	1 cut(s)	278
FriOI	GRGCYC	1 cut(s)	636
Fsp4HI	GCNGC	6 cut(s)	106, 120, 156, 300, 381, 606
GlaI	GCGC	4 cut(s)	109, 187, 199, 586
GluI	GCNGC	6 cut(s)	106, 120, 156, 300, 381, 606
GsaI	CCCAGC	1 cut(s)	162
HaeII	RGCGCY	1 cut(s)	111
HapII	CCGG	2 cut(s)	332, 686
HhaI	GCGC	4 cut(s)	110, 188, 200, 587
Hin1I	GRCGYC	1 cut(s)	108
Hin1II	CATG	6 cut(s)	79, 136, 394, 619, 763, 775
Hin6I	GCGC	4 cut(s)	108, 186, 198, 585
HinP1I	GCGC	4 cut(s)	108, 186, 198, 585
HinfI	GANTC	4 cut(s)	100, 446, 559, 598
HpaII	CCGG	2 cut(s)	332, 686
HphI	GGTGA	3 cut(s)	62, 463, 494
Hpy166II	GTNNAC	3 cut(s)	348, 471, 699
Hpy188I	TCNGA	5 cut(s)	82, 146, 388, 451, 720
Hpy188III	TCNNGA	2 cut(s)	40, 760
Hpy8I	GTNNAC	3 cut(s)	348, 471, 699
Hpy99I	CGWCG	1 cut(s)	227
HpyAV	CCTTC	2 cut(s)	121, 720
HpyCH4III	ACNGT	3 cut(s)	623, 703, 766
HpyCH4V	TGCA	6 cut(s)	136, 371, 383, 647, 675, 785
HpyF10VI	GCNNNNNNNGC	7 cut(s)	116, 128, 206, 296, 359, 368, 377
Hsp92I	GRCGYC	1 cut(s)	108
Hsp92II	CATG	6 cut(s)	79, 136, 394, 619, 763, 775
HspAI	GCGC	4 cut(s)	108, 186, 198, 585
KasI	GGCGCC	1 cut(s)	107
KpnI	GGTACC	1 cut(s)	516
Kzo9I	GATC	5 cut(s)	72, 193, 226, 715, 735
LguI	GCTCTTC	1 cut(s)	624
LmnI	GCTCC	1 cut(s)	287
Lsp1109I	GCAGC	4 cut(s)	106, 142, 286, 367
LweI	GCATC	1 cut(s)	392
MaeIII	GTNAC	2 cut(s)	50, 402
MalI	GATC	5 cut(s)	74, 195, 228, 717, 737
MboI	GATC	5 cut(s)	72, 193, 226, 715, 735
MboII	GAAGA	3 cut(s)	437, 455, 641
MfeI	CAATTG	1 cut(s)	642
MhlI	GDGCHC	2 cut(s)	636, 655
MluCI	AATT	5 cut(s)	147, 479, 642, 740, 786
Mly113I	GGCGCC	1 cut(s)	108
MlyI	GAGTC	1 cut(s)	94
MnlI	CCTC	4 cut(s)	258, 421, 425, 515
MroXI	GAANNNNTTC	1 cut(s)	563
MseI	TTAA	2 cut(s)	432, 743
MspI	CCGG	2 cut(s)	332, 686
MspR9I	CCNGG	1 cut(s)	687
MunI	CAATTG	1 cut(s)	642
Mva1269I	GAATGC	1 cut(s)	707
MvnI	CGCG	3 cut(s)	105, 188, 198
MwoI	GCNNNNNNNGC	7 cut(s)	116, 128, 206, 296, 359, 368, 377
NarI	GGCGCC	1 cut(s)	108
NciI	CCSGG	1 cut(s)	687
NdeII	GATC	5 cut(s)	72, 193, 226, 715, 735
NlaIII	CATG	6 cut(s)	79, 136, 394, 619, 763, 775
NlaIV	GGNNCC	4 cut(s)	109, 210, 289, 514
NmuCI	GTSAC	1 cut(s)	50
NspI	RCATGY	1 cut(s)	394
PagI	TCATGA	1 cut(s)	759
PciI	ACATGT	1 cut(s)	390
PciSI	GCTCTTC	1 cut(s)	624
PctI	GAATGC	1 cut(s)	707
PdmI	GAANNNNTTC	1 cut(s)	563
PfeI	GAWTC	3 cut(s)	446, 559, 598
PflMI	CCANNNNNTGG	2 cut(s)	525, 745
PkrI	GCNGC	6 cut(s)	107, 121, 157, 301, 382, 607
Ple19I	CGATCG	1 cut(s)	718
PleI	GAGTC	1 cut(s)	94
PluTI	GGCGCC	1 cut(s)	111
PpsI	GAGTC	1 cut(s)	94
PscI	ACATGT	1 cut(s)	390
PshBI	ATTAAT	1 cut(s)	743
PspFI	CCCAGC	1 cut(s)	158
PspN4I	GGNNCC	4 cut(s)	109, 210, 289, 514
PvuI	CGATCG	1 cut(s)	718
RsaI	GTAC	4 cut(s)	86, 347, 514, 548
RsaNI	GTAC	4 cut(s)	85, 346, 513, 547
SapI	GCTCTTC	1 cut(s)	624
SaqAI	TTAA	2 cut(s)	432, 743
SatI	GCNGC	6 cut(s)	106, 120, 156, 300, 381, 606
Sau3AI	GATC	5 cut(s)	72, 193, 226, 715, 735
SchI	GAGTC	1 cut(s)	94
ScrFI	CCNGG	1 cut(s)	687
SduI	GDGCHC	2 cut(s)	636, 655
SetI	ASST	7 cut(s)	70, 343, 382, 402, 432, 507, 731
SfaNI	GCATC	1 cut(s)	392
SfcI	CTRYAG	2 cut(s)	171, 550
SfoI	GGCGCC	1 cut(s)	109
SmlI	CTYRAG	1 cut(s)	249
SmoI	CTYRAG	1 cut(s)	249
Sse9I	AATT	5 cut(s)	147, 479, 642, 740, 786
SsiI	CCGC	4 cut(s)	105, 254, 351, 606
SspDI	GGCGCC	1 cut(s)	107
StyD4I	CCNGG	1 cut(s)	685
StyI	CCWWGG	3 cut(s)	396, 474, 508
TaaI	ACNGT	3 cut(s)	623, 703, 766
TaqI	TCGA	3 cut(s)	225, 417, 714
TasI	AATT	5 cut(s)	147, 479, 642, 740, 786
TauI	GCSGC	2 cut(s)	108, 608
TfiI	GAWTC	3 cut(s)	446, 559, 598
Tru1I	TTAA	2 cut(s)	432, 743
Tru9I	TTAA	2 cut(s)	432, 743
TseFI	GTSAC	1 cut(s)	50
TseI	GCWGC	4 cut(s)	119, 155, 299, 380
Tsp45I	GTSAC	1 cut(s)	50
TspDTI	ATGAA	5 cut(s)	103, 632, 700, 748, 760
TspGWI	ACGGA	1 cut(s)	211
Van91I	CCANNNNNTGG	2 cut(s)	525, 745
VspI	ATTAAT	1 cut(s)	743
XapI	RAATTY	2 cut(s)	147, 479
XceI	RCATGY	1 cut(s)	394
XmnI	GAANNNNTTC	1 cut(s)	563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.