pycom02g24530

40S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
N/A
Physical Location & Seq
Reverse (-)
22673076 .. 22673431
356 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 270 bp
ATGGCGCCGAAGAAGGACAAGGCACCGCCGCCGTCGTCGAAGCCGGCGAAGTCCGGCGGAGGCAAGCAGAAGAAGAAGAAGTGGAGCAAGGGAAAGCAGAAGGAGAAGGTGAACAACATGGTGCTCTTCGACCAGGGAACCTACGACAAGCTCCTCACTGAGGCACCCAAGTACAAGCTCATCACACCGTCCATTCGCTCCGACCGTCTCAGGATCAACGGCTCGCTGGCAAGGAGGGCCATCAGGGAGTTGATGGCCAGAGGCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S25

Protein Analysis

90

Amino Acids

10.0

Weight (kDa)

10.67

Isoelectric Point (pI)

47.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S25 PF03297 7 - 88 3.2e-32 S25 ribosomal protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 4, 22, 163
AciI CCGC 3 cut(s) 26, 29, 57
AclWI GGATC 1 cut(s) 221
AcoI YGGCCR 1 cut(s) 255
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 173
AfiI CCNNNNNNNGG 1 cut(s) 160
AjnI CCWGG 1 cut(s) 132
AluBI AGCT 2 cut(s) 151, 178
AluI AGCT 2 cut(s) 151, 178
Alw21I GWGCWC 1 cut(s) 126
Alw26I GTCTC 1 cut(s) 212
AlwI GGATC 1 cut(s) 221
AoxI GGCC 2 cut(s) 237, 255
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 1 cut(s) 237
AsuHPI GGTGA 1 cut(s) 121
BalI TGGCCA 1 cut(s) 257
BanI GGYRCC 3 cut(s) 4, 22, 163
Bbv12I GWGCWC 1 cut(s) 126
BccI CCATC 2 cut(s) 247, 248
BceAI ACGGC 2 cut(s) 16, 235
BciT130I CCWGG 1 cut(s) 134
BcoDI GTCTC 1 cut(s) 212
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 1 cut(s) 29
BlsI GCNGC 1 cut(s) 30
Bme1390I CCNGG 1 cut(s) 134
BmgT120I GGNCC 1 cut(s) 237
BmiI GGNNCC 4 cut(s) 6, 24, 139, 165
BmrFI CCNGG 1 cut(s) 134
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 133
Bsc4I CCNNNNNNNGG 1 cut(s) 160
Bse118I RCCGGY 1 cut(s) 43
BseBI CCWGG 1 cut(s) 134
BseDI CCNNGG 1 cut(s) 133
BseLI CCNNNNNNNGG 1 cut(s) 160
BseMII CTCAG 2 cut(s) 150, 223
BseRI GAGGAG 1 cut(s) 143
Bsh1285I CGRYCG 1 cut(s) 205
BshFI GGCC 2 cut(s) 239, 257
BshNI GGYRCC 3 cut(s) 4, 22, 163
BsiEI CGRYCG 1 cut(s) 205
BsiHKAI GWGCWC 1 cut(s) 126
BsiSI CCGG 2 cut(s) 44, 54
BslI CCNNNNNNNGG 1 cut(s) 160
BsmAI GTCTC 1 cut(s) 212
BsmBI CGTCTC 1 cut(s) 212
BsnI GGCC 2 cut(s) 239, 257
Bsp1286I GDGCHC 1 cut(s) 126
Bsp143I GATC 1 cut(s) 213
BspACI CCGC 3 cut(s) 26, 29, 57
BspANI GGCC 2 cut(s) 239, 257
BspCNI CTCAG 2 cut(s) 151, 222
BspLI GGNNCC 4 cut(s) 6, 24, 139, 165
BspPI GGATC 1 cut(s) 221
BspQI GCTCTTC 1 cut(s) 131
BspT107I GGYRCC 3 cut(s) 4, 22, 163
BsrFI RCCGGY 1 cut(s) 43
BssAI RCCGGY 1 cut(s) 43
BssECI CCNNGG 1 cut(s) 133
BssMI GATC 1 cut(s) 213
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 1 cut(s) 134
Bst4CI ACNGT 2 cut(s) 189, 206
Bst6I CTCTTC 1 cut(s) 131
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 4 cut(s) 45, 65, 224, 228
BstDEI CTNAG 2 cut(s) 159, 209
BstENI CCTNNNNNAGG 1 cut(s) 158
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 1 cut(s) 216
BstMAI GTCTC 1 cut(s) 212
BstMBI GATC 1 cut(s) 213
BstMCI CGRYCG 1 cut(s) 205
BstMWI GCNNNNNNNGC 1 cut(s) 236
BstNI CCWGG 1 cut(s) 134
BstSCI CCNGG 1 cut(s) 132
BsuRI GGCC 2 cut(s) 239, 257
BtsIMutI CAGTG 1 cut(s) 156
Cac8I GCNNGC 4 cut(s) 45, 65, 224, 228
CfoI GCGC 1 cut(s) 7
Cfr10I RCCGGY 1 cut(s) 43
Cfr13I GGNCC 1 cut(s) 237
Csp6I GTAC 1 cut(s) 172
CviAII CATG 1 cut(s) 118
CviJI RGCY 7 cut(s) 43, 151, 178, 222, 239, 257, 264
CviKI_1 RGCY 7 cut(s) 43, 151, 178, 222, 239, 257, 264
CviQI GTAC 1 cut(s) 172
DdeI CTNAG 2 cut(s) 159, 209
DinI GGCGCC 1 cut(s) 6
DpnI GATC 1 cut(s) 215
DpnII GATC 1 cut(s) 213
EaeI YGGCCR 1 cut(s) 255
Eam1104I CTCTTC 1 cut(s) 131
EarI CTCTTC 1 cut(s) 131
EciI GGCGGA 1 cut(s) 72
EcoNI CCTNNNNNAGG 1 cut(s) 158
EcoRII CCWGG 1 cut(s) 132
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
Esp3I CGTCTC 1 cut(s) 212
FaeI CATG 1 cut(s) 121
FaiI YATR 1 cut(s) 119
FatI CATG 1 cut(s) 117
Fnu4HI GCNGC 1 cut(s) 29
Fsp4HI GCNGC 1 cut(s) 29
GlaI GCGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 29
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 2 cut(s) 239, 257
HapII CCGG 2 cut(s) 44, 54
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 121
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HpaII CCGG 2 cut(s) 44, 54
HphI GGTGA 1 cut(s) 121
Hpy166II GTNNAC 1 cut(s) 112
Hpy188I TCNGA 1 cut(s) 202
Hpy188III TCNNGA 1 cut(s) 211
Hpy8I GTNNAC 1 cut(s) 112
Hpy99I CGWCG 2 cut(s) 37, 40
HpyAV CCTTC 3 cut(s) 7, 94, 100
HpyCH4III ACNGT 2 cut(s) 189, 206
HpyF10VI GCNNNNNNNGC 1 cut(s) 236
HpyF3I CTNAG 2 cut(s) 159, 209
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 121
HspAI GCGC 1 cut(s) 5
KasI GGCGCC 1 cut(s) 4
KroI GCCGGC 1 cut(s) 43
KroNI GCCGGC 1 cut(s) 45
Kzo9I GATC 1 cut(s) 213
LguI GCTCTTC 1 cut(s) 131
LmnI GCTCC 3 cut(s) 84, 156, 203
LpnPI CCDG 7 cut(s) 57, 67, 119, 146, 196, 212, 229
MalI GATC 1 cut(s) 215
MboI GATC 1 cut(s) 213
MboII GAAGA 5 cut(s) 22, 82, 85, 88, 118
MhlI GDGCHC 1 cut(s) 126
MlsI TGGCCA 1 cut(s) 257
MluNI TGGCCA 1 cut(s) 257
Mly113I GGCGCC 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 225
MnlI CCTC 5 cut(s) 53, 154, 164, 228, 254
Mox20I TGGCCA 1 cut(s) 257
MroNI GCCGGC 1 cut(s) 43
MscI TGGCCA 1 cut(s) 257
Msp20I TGGCCA 1 cut(s) 257
MspI CCGG 2 cut(s) 44, 54
MspR9I CCNGG 1 cut(s) 134
MvaI CCWGG 1 cut(s) 134
MwoI GCNNNNNNNGC 1 cut(s) 236
NaeI GCCGGC 1 cut(s) 45
NarI GGCGCC 1 cut(s) 5
NdeII GATC 1 cut(s) 213
NgoMIV GCCGGC 1 cut(s) 43
NlaIII CATG 1 cut(s) 121
NlaIV GGNNCC 4 cut(s) 6, 24, 139, 165
PciSI GCTCTTC 1 cut(s) 131
PcsI WCGNNNNNNNCGW 2 cut(s) 44, 202
PdiI GCCGGC 1 cut(s) 45
PkrI GCNGC 1 cut(s) 30
PluTI GGCGCC 1 cut(s) 8
Psp6I CCWGG 1 cut(s) 132
PspGI CCWGG 1 cut(s) 132
PspN4I GGNNCC 4 cut(s) 6, 24, 139, 165
PspPI GGNCC 1 cut(s) 237
RsaI GTAC 1 cut(s) 173
RsaNI GTAC 1 cut(s) 172
SapI GCTCTTC 1 cut(s) 131
SatI GCNGC 1 cut(s) 29
Sau3AI GATC 1 cut(s) 213
Sau96I GGNCC 1 cut(s) 237
ScrFI CCNGG 1 cut(s) 134
SduI GDGCHC 1 cut(s) 126
SetI ASST 4 cut(s) 111, 143, 153, 180
SfoI GGCGCC 1 cut(s) 6
SsiI CCGC 3 cut(s) 26, 29, 57
SspDI GGCGCC 1 cut(s) 4
StyD4I CCNGG 1 cut(s) 132
TaaI ACNGT 2 cut(s) 189, 206
TaqI TCGA 2 cut(s) 38, 129
TatI WGTACW 1 cut(s) 171
TauI GCSGC 1 cut(s) 31
TscAI CASTG 1 cut(s) 163
TspRI CASTG 1 cut(s) 163
XagI CCTNNNNNAGG 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.