pycom02g24970

Ubiquitin carboxyl-terminal hydrolase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
N/A
Physical Location & Seq
Reverse (-)
23029792 .. 23030400
609 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 297 bp
ATGCGCTTTGGTTATGGAAGTCAAGGAAGCACTACGCTGCATAAGCCTGTGCATTTTCCACTTGAATTGGTGTTGGGCCGTGAATTGCTTGTTTCTCCAAATACTGAGGGTCGAAAATACAAACTCGTTGCTACAATAACTCATCACGGGAGAGAGCCGTCAAATGGGCATTATACAACTAATGCTCTCTATGCCAATGGTCAGTGGCTACGCTTTGATGATGCTTCGGTCACGGCAATTGGGACTGGTAAAGTATTGCATAACCAGGCATATGTCCTCATCTACAAACAAGTGTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

99

Amino Acids

10.94

Weight (kDa)

9.57

Isoelectric Point (pI)

26.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UCH PF00443 2 - 95 2.6e-17 Ubiquitin carboxyl-terminal hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 164
AgsI TTSAA 1 cut(s) 65
AjnI CCWGG 1 cut(s) 264
AoxI GGCC 1 cut(s) 76
ApeKI GCWGC 1 cut(s) 37
AspLEI GCGC 1 cut(s) 6
AspS9I GGNCC 1 cut(s) 76
BbvI GCAGC 1 cut(s) 24
BceAI ACGGC 3 cut(s) 63, 142, 249
BciT130I CCWGG 1 cut(s) 266
BisI GCNGC 1 cut(s) 38
BlsI GCNGC 1 cut(s) 39
Bme1390I CCNGG 1 cut(s) 266
BmgT120I GGNCC 1 cut(s) 76
BmrFI CCNGG 1 cut(s) 266
BmsI GCATC 1 cut(s) 211
Bsc4I CCNNNNNNNGG 1 cut(s) 164
Bse1I ACTGG 1 cut(s) 250
BseBI CCWGG 1 cut(s) 266
BseLI CCNNNNNNNGG 1 cut(s) 164
BseMII CTCAG 1 cut(s) 96
BseNI ACTGG 1 cut(s) 250
BseXI GCAGC 1 cut(s) 24
BshFI GGCC 1 cut(s) 78
BslFI GGGAC 1 cut(s) 256
BslI CCNNNNNNNGG 1 cut(s) 164
BsmFI GGGAC 1 cut(s) 256
BsnI GGCC 1 cut(s) 78
BspANI GGCC 1 cut(s) 78
BspCNI CTCAG 1 cut(s) 97
BsrI ACTGG 1 cut(s) 250
Bst2UI CCWGG 1 cut(s) 266
BstDEI CTNAG 1 cut(s) 105
BstHHI GCGC 1 cut(s) 6
BstMWI GCNNNNNNNGC 2 cut(s) 43, 191
BstNI CCWGG 1 cut(s) 266
BstSCI CCNGG 1 cut(s) 264
BstV1I GCAGC 1 cut(s) 24
BsuRI GGCC 1 cut(s) 78
BtsIMutI CAGTG 1 cut(s) 209
CfoI GCGC 1 cut(s) 6
Cfr13I GGNCC 1 cut(s) 76
CspCI CAANNNNNGTGG 2 cut(s) 48, 83
CviJI RGCY 4 cut(s) 46, 78, 157, 208
CviKI_1 RGCY 4 cut(s) 46, 78, 157, 208
DdeI CTNAG 1 cut(s) 105
EcoRII CCWGG 1 cut(s) 264
FaiI YATR 7 cut(s) 15, 42, 174, 192, 261, 271, 273
FaqI GGGAC 1 cut(s) 256
FauNDI CATATG 1 cut(s) 271
Fnu4HI GCNGC 1 cut(s) 38
Fsp4HI GCNGC 1 cut(s) 38
GlaI GCGC 1 cut(s) 5
GluI GCNGC 1 cut(s) 38
HaeIII GGCC 1 cut(s) 78
HhaI GCGC 1 cut(s) 6
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HpyCH4V TGCA 3 cut(s) 40, 52, 259
HpyF10VI GCNNNNNNNGC 2 cut(s) 43, 191
HpyF3I CTNAG 1 cut(s) 105
HspAI GCGC 1 cut(s) 4
LpnPI CCDG 4 cut(s) 60, 231, 251, 278
Lsp1109I GCAGC 1 cut(s) 24
LweI GCATC 1 cut(s) 211
MaeIII GTNAC 1 cut(s) 229
MfeI CAATTG 1 cut(s) 237
MluCI AATT 3 cut(s) 65, 83, 237
MnlI CCTC 2 cut(s) 100, 287
MspR9I CCNGG 1 cut(s) 266
MunI CAATTG 1 cut(s) 237
MvaI CCWGG 1 cut(s) 266
MwoI GCNNNNNNNGC 2 cut(s) 43, 191
NdeI CATATG 1 cut(s) 271
NmuCI GTSAC 1 cut(s) 229
PkrI GCNGC 1 cut(s) 39
Psp6I CCWGG 1 cut(s) 264
PspGI CCWGG 1 cut(s) 264
PspPI GGNCC 1 cut(s) 76
SatI GCNGC 1 cut(s) 38
Sau96I GGNCC 1 cut(s) 76
ScrFI CCNGG 1 cut(s) 266
SfaNI GCATC 1 cut(s) 211
Sse9I AATT 3 cut(s) 65, 83, 237
StyD4I CCNGG 1 cut(s) 264
TaqI TCGA 1 cut(s) 112
TaqII GACCGA 1 cut(s) 217
TasI AATT 3 cut(s) 65, 83, 237
TscAI CASTG 1 cut(s) 209
TseFI GTSAC 1 cut(s) 229
TseI GCWGC 1 cut(s) 37
Tsp45I GTSAC 1 cut(s) 229
TspRI CASTG 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.