Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

23307564 .. 23307818

Gene Structure 255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGTACAGGTGCATATTTTGCCCGAATCCGCTTTGCTCTCTTCGAGTCAGGGCTCCAACACTTATGCCGTGGCATTTCAAGGAAGGGGTCGGGGAATCCGACGACGGGTTTTTGGTGGCGGAGAATCCAAGCTTCGGAATTCCCGACGACACGAGGCACAGTAGCTTCATGAGGGAGGATAGGGAGTTTGTGTCATTGGGGAGAAAAAATGTCGACCTTTCGTCAATTTCCGGGCCACCGAAGAGAGAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006621 GO:0008104 GO:0008150 GO:0009889 GO:0009987 GO:0010556 GO:0010869 GO:0010941 GO:0012505 GO:0019222 GO:0031323 GO:0032507 GO:0033036 GO:0033365 GO:0034613 GO:0035437 GO:0042981 GO:0043067 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045185 GO:0048471 GO:0050789 GO:0050794 GO:0051179 GO:0051235 GO:0051641 GO:0051651 GO:0060255 GO:0065007 GO:0065008 GO:0070727 GO:0070972 GO:0072595 GO:2000209

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 GPCR_chapero_1

Protein Analysis

85

Amino Acids

9.59

Weight (kDa)

6.71

Isoelectric Point (pI)

31.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	213
AciI	CCGC	2 cut(s)	29, 119
AcsI	RAATTY	1 cut(s)	138
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	2 cut(s)	105, 134
AgsI	TTSAA	1 cut(s)	79
AhdI	GACNNNNNGTC	1 cut(s)	220
AluBI	AGCT	2 cut(s)	132, 165
AluI	AGCT	2 cut(s)	132, 165
AoxI	GGCC	1 cut(s)	233
ApoI	RAATTY	1 cut(s)	138
AspS9I	GGNCC	1 cut(s)	233
AsuC2I	CCSGG	1 cut(s)	232
BanII	GRGCYC	1 cut(s)	55
BauI	CACGAG	1 cut(s)	151
BceAI	ACGGC	1 cut(s)	52
BcnI	CCSGG	1 cut(s)	232
Bme1390I	CCNGG	1 cut(s)	232
BmeRI	GACNNNNNGTC	1 cut(s)	220
BmgT120I	GGNCC	1 cut(s)	233
BmiI	GGNNCC	1 cut(s)	54
BmrFI	CCNGG	1 cut(s)	232
BpuMI	CCSGG	1 cut(s)	232
BsaJI	CCNNGG	1 cut(s)	68
BsaXI	ACNNNNNCTCC	2 cut(s)	176, 206
Bsc4I	CCNNNNNNNGG	2 cut(s)	105, 134
BseDI	CCNNGG	1 cut(s)	68
BseLI	CCNNNNNNNGG	2 cut(s)	105, 134
BshFI	GGCC	1 cut(s)	235
BsiSI	CCGG	1 cut(s)	231
BslI	CCNNNNNNNGG	2 cut(s)	105, 134
BsnI	GGCC	1 cut(s)	235
Bsp1286I	GDGCHC	1 cut(s)	55
Bsp1407I	TGTACA	1 cut(s)	3
BspACI	CCGC	2 cut(s)	29, 119
BspANI	GGCC	1 cut(s)	235
BspHI	TCATGA	1 cut(s)	168
BspLI	GGNNCC	1 cut(s)	54
BsrGI	TGTACA	1 cut(s)	3
BssECI	CCNNGG	1 cut(s)	68
BssSI	CACGAG	1 cut(s)	151
Bst2BI	CACGAG	1 cut(s)	151
Bst4CI	ACNGT	1 cut(s)	161
Bst6I	CTCTTC	2 cut(s)	45, 236
BstAPI	GCANNNNNTGC	1 cut(s)	18
BstAUI	TGTACA	1 cut(s)	3
BstDSI	CCRYGG	1 cut(s)	68
BstMWI	GCNNNNNNNGC	1 cut(s)	18
BstSCI	CCNGG	1 cut(s)	230
BsuRI	GGCC	1 cut(s)	235
BtgI	CCRYGG	1 cut(s)	68
CciI	TCATGA	1 cut(s)	168
Cfr13I	GGNCC	1 cut(s)	233
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	1 cut(s)	169
CviJI	RGCY	4 cut(s)	53, 132, 165, 235
CviKI_1	RGCY	4 cut(s)	53, 132, 165, 235
CviQI	GTAC	1 cut(s)	4
DriI	GACNNNNNGTC	1 cut(s)	220
Eam1104I	CTCTTC	2 cut(s)	45, 236
Eam1105I	GACNNNNNGTC	1 cut(s)	220
EarI	CTCTTC	2 cut(s)	45, 236
EciI	GGCGGA	1 cut(s)	134
Eco24I	GRGCYC	1 cut(s)	55
EcoRI	GAATTC	1 cut(s)	138
EcoT38I	GRGCYC	1 cut(s)	55
FaeI	CATG	1 cut(s)	172
FaiI	YATR	3 cut(s)	14, 65, 170
FatI	CATG	1 cut(s)	168
FblI	GTMKAC	1 cut(s)	213
FriOI	GRGCYC	1 cut(s)	55
HaeIII	GGCC	1 cut(s)	235
HapII	CCGG	1 cut(s)	231
Hin1II	CATG	1 cut(s)	172
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HindIII	AAGCTT	1 cut(s)	130
HinfI	GANTC	4 cut(s)	25, 45, 95, 124
HpaII	CCGG	1 cut(s)	231
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	2 cut(s)	100, 137
Hpy188III	TCNNGA	2 cut(s)	143, 169
Hpy8I	GTNNAC	1 cut(s)	214
Hpy99I	CGWCG	3 cut(s)	104, 107, 149
HpyAV	CCTTC	1 cut(s)	77
HpyCH4III	ACNGT	1 cut(s)	161
HpyCH4V	TGCA	1 cut(s)	12
HpyF10VI	GCNNNNNNNGC	1 cut(s)	18
Hsp92II	CATG	1 cut(s)	172
LmnI	GCTCC	1 cut(s)	58
LpnPI	CCDG	2 cut(s)	34, 244
MboII	GAAGA	2 cut(s)	32, 253
MhlI	GDGCHC	1 cut(s)	55
MluCI	AATT	2 cut(s)	138, 225
MlyI	GAGTC	1 cut(s)	54
MmeI	TCCRAC	2 cut(s)	80, 123
MnlI	CCTC	3 cut(s)	147, 165, 169
MspI	CCGG	1 cut(s)	231
MspR9I	CCNGG	1 cut(s)	232
MwoI	GCNNNNNNNGC	1 cut(s)	18
NciI	CCSGG	1 cut(s)	232
NlaIII	CATG	1 cut(s)	172
NlaIV	GGNNCC	1 cut(s)	54
PagI	TCATGA	1 cut(s)	168
PcsI	WCGNNNNNNNCGW	2 cut(s)	96, 141
PfeI	GAWTC	3 cut(s)	25, 95, 124
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
PspN4I	GGNNCC	1 cut(s)	54
PspPI	GGNCC	1 cut(s)	233
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SalI	GTCGAC	1 cut(s)	212
Sau96I	GGNCC	1 cut(s)	233
SchI	GAGTC	1 cut(s)	54
ScrFI	CCNGG	1 cut(s)	232
SduI	GDGCHC	1 cut(s)	55
SetI	ASST	4 cut(s)	11, 134, 167, 219
Sse9I	AATT	2 cut(s)	138, 225
SsiI	CCGC	2 cut(s)	29, 119
StyD4I	CCNGG	1 cut(s)	230
TaaI	ACNGT	1 cut(s)	161
TaqI	TCGA	2 cut(s)	43, 213
TasI	AATT	2 cut(s)	138, 225
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	3 cut(s)	25, 95, 124
TspDTI	ATGAA	1 cut(s)	157
XapI	RAATTY	1 cut(s)	138
XmiI	GTMKAC	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.