pycom02g25370

Protein of unknown function (DUF616)

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
N/A
Physical Location & Seq
Forward (+)
23337649 .. 23338870
1222 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 420 bp
ATGAGGTGGAATCCAGAAGTCTGTGCTCAATCAGCAGTTGATAGTGAGTCTGTGAAAGATGAACGAAAATCTCATATGCTAGTTGCAACAGATGCATGCCTTCTGCTGCTTGCTTCTGGGGAGTCACCTATAGCTGCTCGTGTTCTTAGAAATTATGAGTTACTGACAAAGAAGCTTCATCAAATGAAGGATGTAAATGACTTGAAGATGAAACAGGGGATGGGCGTTAAGCCATGGGTTATTCGGCAACATATGTCCTCATGCCAGTGTTATCATTTCCATCAGCAGTTGAATATTTTGCAGTCACCAATTCAGCCATTAAGACTGCTTGTTCCCACAAACTATCCCAACTGTTATCCAATACTCTTGGACAAGTTGCCAGTTGAGTCAGAGCATTTTTGGCAAGTAACAATGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

140

Amino Acids

16.1

Weight (kDa)

8.63

Isoelectric Point (pI)

62.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 2 cut(s) 205, 292
AluBI AGCT 2 cut(s) 134, 175
AluI AGCT 2 cut(s) 134, 175
Alw21I GWGCWC 1 cut(s) 28
ApeKI GCWGC 2 cut(s) 106, 134
AsuHPI GGTGA 2 cut(s) 117, 297
BauI CACGAG 1 cut(s) 138
Bbv12I GWGCWC 1 cut(s) 28
BbvI GCAGC 2 cut(s) 93, 121
BccI CCATC 2 cut(s) 214, 288
BfaI CTAG 1 cut(s) 80
BfmI CTRYAG 1 cut(s) 129
BisI GCNGC 2 cut(s) 107, 135
BlsI GCNGC 2 cut(s) 108, 136
BmsI GCATC 1 cut(s) 82
BsaJI CCNNGG 1 cut(s) 233
Bse1I ACTGG 2 cut(s) 265, 380
BseDI CCNNGG 1 cut(s) 233
BseGI GGATG 2 cut(s) 196, 225
BseNI ACTGG 2 cut(s) 265, 380
BseXI GCAGC 2 cut(s) 93, 121
BsiHKAI GWGCWC 1 cut(s) 28
Bsp1286I GDGCHC 1 cut(s) 28
Bsp19I CCATGG 1 cut(s) 233
BsrI ACTGG 2 cut(s) 265, 380
BssECI CCNNGG 1 cut(s) 233
BssSI CACGAG 1 cut(s) 138
BssT1I CCWWGG 1 cut(s) 233
Bst2BI CACGAG 1 cut(s) 138
Bst4CI ACNGT 1 cut(s) 353
BstAPI GCANNNNNTGC 1 cut(s) 92
BstC8I GCNNGC 2 cut(s) 97, 111
BstDEI CTNAG 1 cut(s) 146
BstDSI CCRYGG 1 cut(s) 233
BstF5I GGATG 2 cut(s) 196, 225
BstMWI GCNNNNNNNGC 3 cut(s) 32, 92, 400
BstNSI RCATGY 1 cut(s) 99
BstSFI CTRYAG 1 cut(s) 129
BstV1I GCAGC 2 cut(s) 93, 121
BtgI CCRYGG 1 cut(s) 233
BtsCI GGATG 2 cut(s) 196, 225
BtsIMutI CAGTG 1 cut(s) 272
Cac8I GCNNGC 2 cut(s) 97, 111
CviAII CATG 3 cut(s) 96, 234, 261
CviJI RGCY 4 cut(s) 134, 175, 232, 316
CviKI_1 RGCY 4 cut(s) 134, 175, 232, 316
DdeI CTNAG 1 cut(s) 146
Eco130I CCWWGG 1 cut(s) 233
EcoT14I CCWWGG 1 cut(s) 233
EcoT22I ATGCAT 1 cut(s) 97
ErhI CCWWGG 1 cut(s) 233
FaeI CATG 3 cut(s) 99, 237, 264
FaiI YATR 9 cut(s) 75, 77, 97, 131, 156, 235, 252, 254, 262
FatI CATG 3 cut(s) 95, 233, 260
FauNDI CATATG 2 cut(s) 75, 252
Fnu4HI GCNGC 2 cut(s) 107, 135
FokI GGATG 2 cut(s) 203, 232
Fsp4HI GCNGC 2 cut(s) 107, 135
FspBI CTAG 1 cut(s) 80
GluI GCNGC 2 cut(s) 107, 135
Hin1II CATG 3 cut(s) 99, 237, 264
HindIII AAGCTT 1 cut(s) 173
HinfI GANTC 4 cut(s) 10, 47, 122, 386
HphI GGTGA 2 cut(s) 117, 297
Hpy188I TCNGA 1 cut(s) 391
Hpy188III TCNNGA 1 cut(s) 14
HpyAV CCTTC 2 cut(s) 110, 181
HpyCH4III ACNGT 1 cut(s) 353
HpyCH4V TGCA 3 cut(s) 86, 95, 301
HpyF10VI GCNNNNNNNGC 3 cut(s) 32, 92, 400
HpyF3I CTNAG 1 cut(s) 146
Hsp92II CATG 3 cut(s) 99, 237, 264
LpnPI CCDG 5 cut(s) 27, 102, 200, 278, 393
Lsp1109I GCAGC 2 cut(s) 93, 121
LweI GCATC 1 cut(s) 82
MaeI CTAG 1 cut(s) 80
MaeIII GTNAC 4 cut(s) 123, 159, 303, 406
MboII GAAGA 1 cut(s) 217
MhlI GDGCHC 1 cut(s) 28
MluCI AATT 2 cut(s) 151, 309
MlyI GAGTC 3 cut(s) 56, 131, 395
MnlI CCTC 2 cut(s) 268, 408
Mph1103I ATGCAT 1 cut(s) 97
MseI TTAA 2 cut(s) 228, 320
MslI CAYNNNNRTG 1 cut(s) 265
MwoI GCNNNNNNNGC 3 cut(s) 32, 92, 400
NcoI CCATGG 1 cut(s) 233
NdeI CATATG 2 cut(s) 75, 252
NlaIII CATG 3 cut(s) 99, 237, 264
NmuCI GTSAC 2 cut(s) 123, 303
NsiI ATGCAT 1 cut(s) 97
NspI RCATGY 1 cut(s) 99
PaeI GCATGC 1 cut(s) 99
PfeI GAWTC 1 cut(s) 10
PkrI GCNGC 2 cut(s) 108, 136
PleI GAGTC 3 cut(s) 55, 130, 394
PpsI GAGTC 3 cut(s) 55, 130, 394
RseI CAYNNNNRTG 1 cut(s) 265
SaqAI TTAA 2 cut(s) 228, 320
SatI GCNGC 2 cut(s) 107, 135
SchI GAGTC 3 cut(s) 56, 131, 395
SduI GDGCHC 1 cut(s) 28
SetI ASST 5 cut(s) 8, 130, 136, 177, 419
SfaNI GCATC 1 cut(s) 82
SfcI CTRYAG 1 cut(s) 129
SmiMI CAYNNNNRTG 1 cut(s) 265
SphI GCATGC 1 cut(s) 99
Sse9I AATT 2 cut(s) 151, 309
SspI AATATT 1 cut(s) 295
SspMI CTAG 1 cut(s) 80
StyI CCWWGG 1 cut(s) 233
TaaI ACNGT 1 cut(s) 353
TasI AATT 2 cut(s) 151, 309
TfiI GAWTC 1 cut(s) 10
Tru1I TTAA 2 cut(s) 228, 320
Tru9I TTAA 2 cut(s) 228, 320
TscAI CASTG 1 cut(s) 272
TseFI GTSAC 2 cut(s) 123, 303
TseI GCWGC 2 cut(s) 106, 134
Tsp45I GTSAC 2 cut(s) 123, 303
TspDTI ATGAA 4 cut(s) 75, 167, 200, 224
TspRI CASTG 1 cut(s) 272
XceI RCATGY 1 cut(s) 99
XspI CTAG 1 cut(s) 80
Zsp2I ATGCAT 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.