pycom02g25440

Structural maintenance of chromosomes protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
N/A
Physical Location & Seq
Reverse (-)
23360141 .. 23361098
958 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 447 bp
ATGACACTATTTGAAACTATTGCTAACAATTTTGTTGCTAAATATGAATTTTGGTCATTTTTACCACAAGATCGTGTCTGTGAGTTCGCCAAATTAACTCCAGTGCAACTTCTTGAAGAGACTGAAAAGGCTGTAGGCAATCCTCAACTGCCGATCCAACATCGTGCACTTACTGAGCAAAGCAAGAAATTGAAAGGAGTAGAACATTTTGCCTTTTTGATTTTGGCTGTTGAAAAAAATGGAGAAACTTTGAATCAGTTGAAGGCACTGAATGCTGAACAAGAGAAAGATGTTGAGCATGTCCACCAAAGAGAGGAACTTCTCGCAAAGAAAGATAAAAAAAAAACTGAACTCCATCTGACCATAAATCCCCTCCCCACCCTCAAAGAGAAAAAAAGCCCTTCTGCTTCCCACACAAGTAAGCTGGAATTAAAATTTCTTTCTTGA
Functional Annotation

Protein Analysis

149

Amino Acids

16.99

Weight (kDa)

7.85

Isoelectric Point (pI)

26.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 148
AcsI RAATTY 2 cut(s) 47, 434
AfiI CCNNNNNNNGG 1 cut(s) 313
AgsI TTSAA 6 cut(s) 14, 116, 193, 233, 253, 262
AluBI AGCT 1 cut(s) 424
AluI AGCT 1 cut(s) 424
Alw21I GWGCWC 1 cut(s) 169
Alw26I GTCTC 1 cut(s) 113
Alw44I GTGCAC 1 cut(s) 165
AlwI GGATC 1 cut(s) 148
ApaLI GTGCAC 1 cut(s) 165
ApoI RAATTY 2 cut(s) 47, 434
BaeGI GKGCMC 1 cut(s) 169
Bbv12I GWGCWC 1 cut(s) 169
BccI CCATC 1 cut(s) 363
BcoDI GTCTC 1 cut(s) 113
BfmI CTRYAG 1 cut(s) 132
BpmI CTGGAG 1 cut(s) 84
Bsc4I CCNNNNNNNGG 1 cut(s) 313
Bse1I ACTGG 1 cut(s) 101
BseLI CCNNNNNNNGG 1 cut(s) 313
BseMII CTCAG 1 cut(s) 165
BseNI ACTGG 1 cut(s) 101
BseSI GKGCMC 1 cut(s) 169
BsiHKAI GWGCWC 1 cut(s) 169
BslI CCNNNNNNNGG 1 cut(s) 313
BsmAI GTCTC 1 cut(s) 113
BsmI GAATGC 1 cut(s) 277
Bsp1286I GDGCHC 1 cut(s) 169
Bsp143I GATC 2 cut(s) 70, 153
BspCNI CTCAG 1 cut(s) 166
BspPI GGATC 1 cut(s) 148
BsrI ACTGG 1 cut(s) 101
BssMI GATC 2 cut(s) 70, 153
Bst6I CTCTTC 1 cut(s) 111
BstAPI GCANNNNNTGC 1 cut(s) 272
BstDEI CTNAG 1 cut(s) 174
BstKTI GATC 2 cut(s) 73, 156
BstMAI GTCTC 1 cut(s) 113
BstMBI GATC 2 cut(s) 70, 153
BstMWI GCNNNNNNNGC 1 cut(s) 272
BstNSI RCATGY 1 cut(s) 302
BstSFI CTRYAG 1 cut(s) 132
BstSLI GKGCMC 1 cut(s) 169
BtsIMutI CAGTG 2 cut(s) 108, 266
CviAII CATG 1 cut(s) 299
CviJI RGCY 4 cut(s) 131, 227, 399, 424
CviKI_1 RGCY 4 cut(s) 131, 227, 399, 424
DdeI CTNAG 1 cut(s) 174
DpnI GATC 2 cut(s) 72, 155
DpnII GATC 2 cut(s) 70, 153
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
FaeI CATG 1 cut(s) 302
FaiI YATR 3 cut(s) 45, 300, 365
FatI CATG 1 cut(s) 298
GsuI CTGGAG 1 cut(s) 84
Hin1II CATG 1 cut(s) 302
HinfI GANTC 1 cut(s) 253
Hpy166II GTNNAC 2 cut(s) 167, 304
Hpy188I TCNGA 1 cut(s) 360
Hpy188III TCNNGA 2 cut(s) 113, 444
Hpy8I GTNNAC 2 cut(s) 167, 304
HpyAV CCTTC 2 cut(s) 256, 411
HpyCH4V TGCA 2 cut(s) 106, 167
HpyF10VI GCNNNNNNNGC 1 cut(s) 272
HpyF3I CTNAG 1 cut(s) 174
Hsp92II CATG 1 cut(s) 302
Kzo9I GATC 2 cut(s) 70, 153
LpnPI CCDG 2 cut(s) 114, 410
MalI GATC 2 cut(s) 72, 155
MboI GATC 2 cut(s) 70, 153
MboII GAAGA 1 cut(s) 128
MhlI GDGCHC 1 cut(s) 169
MluCI AATT 6 cut(s) 28, 47, 92, 188, 428, 434
MmeI TCCRAC 1 cut(s) 181
MnlI CCTC 4 cut(s) 153, 307, 383, 392
MseI TTAA 2 cut(s) 95, 431
Mva1269I GAATGC 1 cut(s) 277
MwoI GCNNNNNNNGC 1 cut(s) 272
NdeII GATC 2 cut(s) 70, 153
NlaIII CATG 1 cut(s) 302
NspI RCATGY 1 cut(s) 302
PctI GAATGC 1 cut(s) 277
PfeI GAWTC 1 cut(s) 253
SaqAI TTAA 2 cut(s) 95, 431
Sau3AI GATC 2 cut(s) 70, 153
SduI GDGCHC 1 cut(s) 169
SetI ASST 1 cut(s) 426
SfcI CTRYAG 1 cut(s) 132
Sse9I AATT 6 cut(s) 28, 47, 92, 188, 428, 434
TasI AATT 6 cut(s) 28, 47, 92, 188, 428, 434
TfiI GAWTC 1 cut(s) 253
Tru1I TTAA 2 cut(s) 95, 431
Tru9I TTAA 2 cut(s) 95, 431
TscAI CASTG 2 cut(s) 108, 273
TspDTI ATGAA 1 cut(s) 60
TspRI CASTG 2 cut(s) 108, 273
VneI GTGCAC 1 cut(s) 165
XapI RAATTY 2 cut(s) 47, 434
XceI RCATGY 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.