Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

24109643 .. 24110954

Gene Structure 1312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGCTGTCTGGGCTAGTCATCTCTATTGGTGGGTTGCAAGATTCTTTGAGAAAGGCATCACTCACAGCATTGATAGAGTATCTTCAAGTTGTAGAAAGTGAAGACCAGAATGCAAGGTCCAGAGAGTATATGCTGTCTACTGACATGCCTTGGGTTCTCCAACAGTATCAGAGATGCGACATAGTCATTGTACCTGCTTTGAAGACCATCGAGATTCTTTTCAGCAAACAGATATTTCTGAGTATGGAGGTTCATACACTTGTTTTTTGTGCTGGTGGTTTGGACTCTCTGGAAGTTGAATTAAAAGGGTCAAAGGACTTCTCCAAGCTATATGCAGGCATTGCAATACTTGGATATATTTCTTCAGTTTCGGAATCCATCAACACTCGGGCCTTCTCTCATCTTCTCAGTTTTCTTGGCCATTGCTACCCTAAGATACGGAAAGCTTCTGCTGAACAAGTTTACCTTGTCCTCTTGCAAAATGGGGGTCTTGTGGTTGAGGACAAGATGGAGAAAGCGCTTGAAATTATTTCGGAAACCTGCTGGGAAGGTGACATGGAAGCAGCAAAATTCCGAAGGTTGGAGTTGTATGATATTGCTGATCTTGACACAGATATACTTCGAAAGTCTAGTAGTCGAGTATCAAATAAGGATGGTAACAGAAAGCCAACAACTACAGATGAAAATACATCATATTCCTGGTTAGTTGAGTCATCTGGCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0003006 GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005874 GO:0005911 GO:0006457 GO:0006996 GO:0007010 GO:0007017 GO:0007021 GO:0007275 GO:0008047 GO:0008092 GO:0008150 GO:0009506 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0015630 GO:0015631 GO:0016043 GO:0022414 GO:0022607 GO:0030054 GO:0030234 GO:0030695 GO:0032501 GO:0032502 GO:0034622 GO:0043085 GO:0043087 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043547 GO:0043933 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048487 GO:0048608 GO:0048731 GO:0048856 GO:0050790 GO:0051336 GO:0051345 GO:0055044 GO:0060589 GO:0061458 GO:0065003 GO:0065007 GO:0065009 GO:0071840 GO:0098772 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TFCD_C

Protein Analysis

242

Amino Acids

27.0

Weight (kDa)

5.03

Isoelectric Point (pI)

50.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TFCD_C	PF12612	2 - 109	2.8e-22	Tubulin folding cofactor D C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	202, 548
AccI	GTMKAC	1 cut(s)	137
AcoI	YGGCCR	1 cut(s)	418
AcsI	RAATTY	1 cut(s)	569
AcuI	CTGAAG	1 cut(s)	348
AfaI	GTAC	1 cut(s)	192
AfeI	AGCGCT	1 cut(s)	519
AfiI	CCNNNNNNNGG	1 cut(s)	580
AgsI	TTSAA	4 cut(s)	86, 202, 299, 524
AjnI	CCWGG	1 cut(s)	698
AluBI	AGCT	2 cut(s)	328, 446
AluI	AGCT	2 cut(s)	328, 446
Ama87I	CYCGRG	1 cut(s)	387
Aor51HI	AGCGCT	1 cut(s)	519
AoxI	GGCC	2 cut(s)	390, 418
ApeKI	GCWGC	1 cut(s)	563
ApoI	RAATTY	1 cut(s)	569
ArsI	GACNNNNNNTTYG	2 cut(s)	472, 504
AspLEI	GCGC	1 cut(s)	520
AspS9I	GGNCC	2 cut(s)	117, 390
AsuHPI	GGTGA	1 cut(s)	563
AsuII	TTCGAA	1 cut(s)	622
AvaI	CYCGRG	1 cut(s)	387
AvaII	GGWCC	1 cut(s)	117
BalI	TGGCCA	1 cut(s)	420
BbsI	GAAGAC	2 cut(s)	108, 209
BbvI	GCAGC	1 cut(s)	575
BccI	CCATC	4 cut(s)	215, 386, 502, 647
BciT130I	CCWGG	1 cut(s)	700
BfaI	CTAG	2 cut(s)	14, 630
BfmI	CTRYAG	1 cut(s)	675
BfoI	RGCGCY	1 cut(s)	521
BfuAI	ACCTGC	2 cut(s)	202, 548
BisI	GCNGC	1 cut(s)	564
BlsI	GCNGC	1 cut(s)	565
Bme1390I	CCNGG	1 cut(s)	700
Bme18I	GGWCC	1 cut(s)	117
BmeT110I	CYCGRG	1 cut(s)	387
BmgT120I	GGNCC	2 cut(s)	117, 390
BmrFI	CCNGG	1 cut(s)	700
BmsI	GCATC	2 cut(s)	65, 164
BpiI	GAAGAC	2 cut(s)	108, 209
Bpu14I	TTCGAA	1 cut(s)	622
BsaJI	CCNNGG	1 cut(s)	149
Bsc4I	CCNNNNNNNGG	1 cut(s)	580
Bse3DI	GCAATG	2 cut(s)	339, 421
BseBI	CCWGG	1 cut(s)	700
BseDI	CCNNGG	1 cut(s)	149
BseGI	GGATG	1 cut(s)	658
BseLI	CCNNNNNNNGG	1 cut(s)	580
BseMI	GCAATG	2 cut(s)	339, 421
BseMII	CTCAG	2 cut(s)	230, 421
BseXI	GCAGC	1 cut(s)	575
BseYI	CCCAGC	1 cut(s)	543
BshFI	GGCC	2 cut(s)	392, 420
BsiHKCI	CYCGRG	1 cut(s)	387
BslI	CCNNNNNNNGG	1 cut(s)	580
BsmI	GAATGC	1 cut(s)	115
BsnI	GGCC	2 cut(s)	392, 420
BsoBI	CYCGRG	1 cut(s)	387
Bsp119I	TTCGAA	1 cut(s)	622
Bsp143I	GATC	1 cut(s)	601
BspANI	GGCC	2 cut(s)	392, 420
BspCNI	CTCAG	2 cut(s)	231, 420
BspMI	ACCTGC	2 cut(s)	202, 548
BspT104I	TTCGAA	1 cut(s)	622
BsrDI	GCAATG	2 cut(s)	339, 421
BssECI	CCNNGG	1 cut(s)	149
BssMI	GATC	1 cut(s)	601
BssT1I	CCWWGG	1 cut(s)	149
Bst2UI	CCWGG	1 cut(s)	700
Bst4CI	ACNGT	1 cut(s)	165
BstAPI	GCANNNNNTGC	1 cut(s)	341
BstBI	TTCGAA	1 cut(s)	622
BstC8I	GCNNGC	1 cut(s)	337
BstDEI	CTNAG	3 cut(s)	239, 407, 432
BstF5I	GGATG	1 cut(s)	658
BstH2I	RGCGCY	1 cut(s)	521
BstHHI	GCGC	1 cut(s)	520
BstKTI	GATC	1 cut(s)	604
BstMBI	GATC	1 cut(s)	601
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 341
BstNI	CCWGG	1 cut(s)	700
BstNSI	RCATGY	1 cut(s)	148
BstSCI	CCNGG	1 cut(s)	698
BstSFI	CTRYAG	1 cut(s)	675
BstV1I	GCAGC	1 cut(s)	575
BstV2I	GAAGAC	2 cut(s)	108, 209
BsuRI	GGCC	2 cut(s)	392, 420
BtsCI	GGATG	1 cut(s)	658
BveI	ACCTGC	2 cut(s)	202, 548
Cac8I	GCNNGC	1 cut(s)	337
CfoI	GCGC	1 cut(s)	520
Cfr13I	GGNCC	2 cut(s)	117, 390
Csp6I	GTAC	1 cut(s)	191
CviAII	CATG	2 cut(s)	145, 556
CviJI	RGCY	7 cut(s)	13, 328, 392, 420, 446, 667, 720
CviKI_1	RGCY	7 cut(s)	13, 328, 392, 420, 446, 667, 720
CviQI	GTAC	1 cut(s)	191
DdeI	CTNAG	3 cut(s)	239, 407, 432
DpnI	GATC	1 cut(s)	603
DpnII	GATC	1 cut(s)	601
EaeI	YGGCCR	1 cut(s)	418
Eco130I	CCWWGG	1 cut(s)	149
Eco47I	GGWCC	1 cut(s)	117
Eco47III	AGCGCT	1 cut(s)	519
Eco57I	CTGAAG	1 cut(s)	348
Eco88I	CYCGRG	1 cut(s)	387
EcoRII	CCWGG	1 cut(s)	698
EcoT14I	CCWWGG	1 cut(s)	149
ErhI	CCWWGG	1 cut(s)	149
FaeI	CATG	2 cut(s)	148, 559
FalI	AAGNNNNNCTT	2 cut(s)	450, 482
FatI	CATG	2 cut(s)	144, 555
FblI	GTMKAC	1 cut(s)	137
Fnu4HI	GCNGC	1 cut(s)	564
FokI	GGATG	1 cut(s)	665
Fsp4HI	GCNGC	1 cut(s)	564
FspBI	CTAG	2 cut(s)	14, 630
GlaI	GCGC	1 cut(s)	519
GluI	GCNGC	1 cut(s)	564
GsaI	CCCAGC	1 cut(s)	547
HaeII	RGCGCY	1 cut(s)	521
HaeIII	GGCC	2 cut(s)	392, 420
HhaI	GCGC	1 cut(s)	520
Hin1II	CATG	2 cut(s)	148, 559
Hin6I	GCGC	1 cut(s)	518
HinP1I	GCGC	1 cut(s)	518
HindIII	AAGCTT	1 cut(s)	444
HinfI	GANTC	5 cut(s)	41, 214, 284, 374, 710
HphI	GGTGA	1 cut(s)	563
Hpy166II	GTNNAC	2 cut(s)	138, 463
Hpy188I	TCNGA	5 cut(s)	171, 240, 373, 535, 575
Hpy188III	TCNNGA	4 cut(s)	120, 211, 290, 605
Hpy8I	GTNNAC	2 cut(s)	138, 463
HpyAV	CCTTC	3 cut(s)	403, 542, 570
HpyCH4III	ACNGT	1 cut(s)	165
HpyCH4V	TGCA	5 cut(s)	37, 113, 335, 344, 478
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 341
HpyF3I	CTNAG	3 cut(s)	239, 407, 432
Hsp92II	CATG	2 cut(s)	148, 559
HspAI	GCGC	1 cut(s)	518
Kzo9I	GATC	1 cut(s)	601
Lsp1109I	GCAGC	1 cut(s)	575
LweI	GCATC	2 cut(s)	65, 164
MaeI	CTAG	2 cut(s)	14, 630
MaeIII	GTNAC	2 cut(s)	551, 656
MalI	GATC	1 cut(s)	603
MboI	GATC	1 cut(s)	601
MboII	GAAGA	5 cut(s)	74, 113, 214, 354, 395
MlsI	TGGCCA	1 cut(s)	420
MluCI	AATT	3 cut(s)	299, 525, 569
MluNI	TGGCCA	1 cut(s)	420
MlyI	GAGTC	2 cut(s)	278, 719
MmeI	TCCRAC	2 cut(s)	184, 561
MnlI	CCTC	3 cut(s)	241, 482, 493
Mox20I	TGGCCA	1 cut(s)	420
MscI	TGGCCA	1 cut(s)	420
MseI	TTAA	1 cut(s)	302
Msp20I	TGGCCA	1 cut(s)	420
MspR9I	CCNGG	1 cut(s)	700
Mva1269I	GAATGC	1 cut(s)	115
MvaI	CCWGG	1 cut(s)	700
MwoI	GCNNNNNNNGC	2 cut(s)	10, 341
NdeII	GATC	1 cut(s)	601
NlaIII	CATG	2 cut(s)	148, 559
NmuCI	GTSAC	1 cut(s)	551
NspI	RCATGY	1 cut(s)	148
NspV	TTCGAA	1 cut(s)	622
PctI	GAATGC	1 cut(s)	115
PfeI	GAWTC	3 cut(s)	41, 214, 374
PflFI	GACNNNGTC	1 cut(s)	182
PkrI	GCNGC	1 cut(s)	565
PleI	GAGTC	2 cut(s)	278, 718
PpsI	GAGTC	2 cut(s)	278, 718
Psp6I	CCWGG	1 cut(s)	698
PspFI	CCCAGC	1 cut(s)	543
PspGI	CCWGG	1 cut(s)	698
PspPI	GGNCC	2 cut(s)	117, 390
PsyI	GACNNNGTC	1 cut(s)	182
RsaI	GTAC	1 cut(s)	192
RsaNI	GTAC	1 cut(s)	191
SaqAI	TTAA	1 cut(s)	302
SatI	GCNGC	1 cut(s)	564
Sau3AI	GATC	1 cut(s)	601
Sau96I	GGNCC	2 cut(s)	117, 390
SchI	GAGTC	2 cut(s)	278, 719
ScrFI	CCNGG	1 cut(s)	700
SetI	ASST	9 cut(s)	119, 196, 252, 330, 448, 468, 542, 553, 581
SfaNI	GCATC	2 cut(s)	65, 164
SfcI	CTRYAG	1 cut(s)	675
SfuI	TTCGAA	1 cut(s)	622
SinI	GGWCC	1 cut(s)	117
Sse9I	AATT	3 cut(s)	299, 525, 569
SspMI	CTAG	2 cut(s)	14, 630
StyD4I	CCNGG	1 cut(s)	698
StyI	CCWWGG	1 cut(s)	149
TaaI	ACNGT	1 cut(s)	165
TaqI	TCGA	3 cut(s)	210, 622, 637
TasI	AATT	3 cut(s)	299, 525, 569
TfiI	GAWTC	3 cut(s)	41, 214, 374
Tru1I	TTAA	1 cut(s)	302
Tru9I	TTAA	1 cut(s)	302
TseFI	GTSAC	1 cut(s)	551
TseI	GCWGC	1 cut(s)	563
Tsp45I	GTSAC	1 cut(s)	551
TspDTI	ATGAA	2 cut(s)	242, 696
TspGWI	ACGGA	1 cut(s)	454
Tth111I	GACNNNGTC	1 cut(s)	182
VpaK11BI	GGWCC	1 cut(s)	117
XapI	RAATTY	1 cut(s)	569
XceI	RCATGY	1 cut(s)	148
XmiI	GTMKAC	1 cut(s)	137
XspI	CTAG	2 cut(s)	14, 630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.