Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

251039 .. 251514

Gene Structure 476 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g00270.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGACTTCAGTTGGTTCCTTGGCTGCTCCTAGTGGCCGTGTCGTTGACAGAAAATTCGACAGCTTGTCGTCTCGTGCTTCAATCTCTTCATTCTCTCTCTCTAGGAGGCAAAATGTGGCTATGAGGAGGACACGGGCTCCCAGGATCTGCGCCATGGCCAAGGAATTGCACTTCAACAAGGACGGCTCTGCCATCAAGAAATTACAGACTGGTGTCAACAAGCTCGCCGACCTTGTTGGGGTTACACTTGGTCCAAAGGGAAGGAATGTCGTTCTAGAGAGCAAGTATGGCTCCCCCAAAATTGTTAACGATGGTGTAACCGTCGCAAAAGAGGTTTATGATCCTTTCTTTGTGTCACATTTTTGGAGGGAACAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005829 GO:0005840 GO:0006457 GO:0006458 GO:0006996 GO:0007005 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0016020 GO:0016043 GO:0022626 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044183 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0051082 GO:0061077 GO:0070013 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03018 ko04212 ko04940 ko05134 ko05152 map03018 map04212 map04940 map05134 map05152

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

127

Amino Acids

13.83

Weight (kDa)

10.43

Isoelectric Point (pI)

37.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	152, 335
AcoI	YGGCCR	2 cut(s)	34, 156
AcsI	RAATTY	1 cut(s)	53
AfiI	CCNNNNNNNGG	1 cut(s)	238
AgsI	TTSAA	2 cut(s)	81, 175
AhdI	GACNNNNNGTC	1 cut(s)	64
AjnI	CCWGG	1 cut(s)	140
AluBI	AGCT	2 cut(s)	63, 223
AluI	AGCT	2 cut(s)	63, 223
Alw26I	GTCTC	1 cut(s)	75
AlwI	GGATC	2 cut(s)	152, 335
AlwNI	CAGNNNCTG	1 cut(s)	147
AoxI	GGCC	2 cut(s)	34, 156
ApeKI	GCWGC	1 cut(s)	23
ApoI	RAATTY	1 cut(s)	53
ArsI	GACNNNNNNTTYG	2 cut(s)	38, 70
AspLEI	GCGC	1 cut(s)	152
AspS9I	GGNCC	1 cut(s)	251
AvaII	GGWCC	1 cut(s)	251
BalI	TGGCCA	1 cut(s)	158
BanII	GRGCYC	1 cut(s)	139
BauI	CACGAG	1 cut(s)	72
BbvI	GCAGC	1 cut(s)	10
BccI	CCATC	2 cut(s)	200, 305
BceAI	ACGGC	2 cut(s)	21, 199
BciT130I	CCWGG	1 cut(s)	142
BcoDI	GTCTC	1 cut(s)	75
BfaI	CTAG	3 cut(s)	30, 102, 275
BisI	GCNGC	1 cut(s)	24
BlsI	GCNGC	1 cut(s)	25
Bme1390I	CCNGG	1 cut(s)	142
Bme18I	GGWCC	1 cut(s)	251
BmeRI	GACNNNNNGTC	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	251
BmiI	GGNNCC	3 cut(s)	16, 138, 292
BmrFI	CCNGG	1 cut(s)	142
BoxI	GACNNNNGTC	1 cut(s)	212
BsaJI	CCNNGG	4 cut(s)	18, 140, 153, 159
BsaXI	ACNNNNNCTCC	2 cut(s)	121, 151
Bsc4I	CCNNNNNNNGG	1 cut(s)	238
Bse1I	ACTGG	1 cut(s)	214
BseBI	CCWGG	1 cut(s)	142
BseDI	CCNNGG	4 cut(s)	18, 140, 153, 159
BseLI	CCNNNNNNNGG	1 cut(s)	238
BseNI	ACTGG	1 cut(s)	214
BseRI	GAGGAG	1 cut(s)	139
BseXI	GCAGC	1 cut(s)	10
BshFI	GGCC	2 cut(s)	36, 158
BslI	CCNNNNNNNGG	1 cut(s)	238
BsmAI	GTCTC	1 cut(s)	75
BsmBI	CGTCTC	1 cut(s)	75
BsnI	GGCC	2 cut(s)	36, 158
Bsp1286I	GDGCHC	1 cut(s)	139
Bsp143I	GATC	2 cut(s)	144, 340
Bsp19I	CCATGG	1 cut(s)	153
BspANI	GGCC	2 cut(s)	36, 158
BspLI	GGNNCC	3 cut(s)	16, 138, 292
BspPI	GGATC	2 cut(s)	152, 335
BsrI	ACTGG	1 cut(s)	214
BssECI	CCNNGG	4 cut(s)	18, 140, 153, 159
BssMI	GATC	2 cut(s)	144, 340
BssSI	CACGAG	1 cut(s)	72
BssT1I	CCWWGG	3 cut(s)	18, 153, 159
Bst2BI	CACGAG	1 cut(s)	72
Bst2UI	CCWGG	1 cut(s)	142
Bst4CI	ACNGT	1 cut(s)	322
Bst6I	CTCTTC	1 cut(s)	91
BstC8I	GCNNGC	1 cut(s)	225
BstDSI	CCRYGG	1 cut(s)	153
BstHHI	GCGC	1 cut(s)	152
BstKTI	GATC	2 cut(s)	147, 343
BstMAI	GTCTC	1 cut(s)	75
BstMBI	GATC	2 cut(s)	144, 340
BstMWI	GCNNNNNNNGC	1 cut(s)	288
BstNI	CCWGG	1 cut(s)	142
BstPAI	GACNNNNGTC	1 cut(s)	212
BstSCI	CCNGG	1 cut(s)	140
BstV1I	GCAGC	1 cut(s)	10
BstX2I	RGATCY	1 cut(s)	144
BstYI	RGATCY	1 cut(s)	144
BsuRI	GGCC	2 cut(s)	36, 158
BtgI	CCRYGG	1 cut(s)	153
Cac8I	GCNNGC	1 cut(s)	225
CaiI	CAGNNNCTG	1 cut(s)	147
CfoI	GCGC	1 cut(s)	152
Cfr13I	GGNCC	1 cut(s)	251
CviAII	CATG	1 cut(s)	154
CviJI	RGCY	9 cut(s)	23, 36, 63, 119, 137, 158, 186, 223, 291
CviKI_1	RGCY	9 cut(s)	23, 36, 63, 119, 137, 158, 186, 223, 291
DpnI	GATC	2 cut(s)	146, 342
DpnII	GATC	2 cut(s)	144, 340
DriI	GACNNNNNGTC	1 cut(s)	64
EaeI	YGGCCR	2 cut(s)	34, 156
Eam1104I	CTCTTC	1 cut(s)	91
Eam1105I	GACNNNNNGTC	1 cut(s)	64
EarI	CTCTTC	1 cut(s)	91
Eco130I	CCWWGG	3 cut(s)	18, 153, 159
Eco24I	GRGCYC	1 cut(s)	139
Eco47I	GGWCC	1 cut(s)	251
EcoRII	CCWGG	1 cut(s)	140
EcoT14I	CCWWGG	3 cut(s)	18, 153, 159
EcoT38I	GRGCYC	1 cut(s)	139
ErhI	CCWWGG	3 cut(s)	18, 153, 159
Esp3I	CGTCTC	1 cut(s)	75
FaeI	CATG	1 cut(s)	157
FaiI	YATR	4 cut(s)	122, 155, 288, 339
FatI	CATG	1 cut(s)	153
Fnu4HI	GCNGC	1 cut(s)	24
FriOI	GRGCYC	1 cut(s)	139
Fsp4HI	GCNGC	1 cut(s)	24
FspBI	CTAG	3 cut(s)	30, 102, 275
GlaI	GCGC	1 cut(s)	151
GluI	GCNGC	1 cut(s)	24
HaeIII	GGCC	2 cut(s)	36, 158
HhaI	GCGC	1 cut(s)	152
Hin1II	CATG	1 cut(s)	157
Hin6I	GCGC	1 cut(s)	150
HinP1I	GCGC	1 cut(s)	150
HincII	GTYRAC	3 cut(s)	46, 217, 307
HindII	GTYRAC	3 cut(s)	46, 217, 307
HpaI	GTTAAC	1 cut(s)	307
Hpy166II	GTNNAC	3 cut(s)	46, 217, 307
Hpy188III	TCNNGA	2 cut(s)	196, 275
Hpy8I	GTNNAC	3 cut(s)	46, 217, 307
Hpy99I	CGWCG	1 cut(s)	326
HpyAV	CCTTC	1 cut(s)	255
HpyCH4III	ACNGT	1 cut(s)	322
HpyCH4V	TGCA	1 cut(s)	169
HpyF10VI	GCNNNNNNNGC	1 cut(s)	288
Hsp92II	CATG	1 cut(s)	157
HspAI	GCGC	1 cut(s)	150
KspAI	GTTAAC	1 cut(s)	307
Kzo9I	GATC	2 cut(s)	144, 340
LmnI	GCTCC	3 cut(s)	31, 142, 296
LpnPI	CCDG	3 cut(s)	127, 154, 195
Lsp1109I	GCAGC	1 cut(s)	10
MaeI	CTAG	3 cut(s)	30, 102, 275
MaeIII	GTNAC	3 cut(s)	241, 316, 354
MalI	GATC	2 cut(s)	146, 342
MboI	GATC	2 cut(s)	144, 340
MboII	GAAGA	1 cut(s)	78
MflI	RGATCY	1 cut(s)	144
MhlI	GDGCHC	1 cut(s)	139
MlsI	TGGCCA	1 cut(s)	158
MluCI	AATT	4 cut(s)	53, 164, 200, 300
MluNI	TGGCCA	1 cut(s)	158
MnlI	CCTC	5 cut(s)	99, 117, 120, 325, 360
Mox20I	TGGCCA	1 cut(s)	158
MscI	TGGCCA	1 cut(s)	158
MseI	TTAA	2 cut(s)	306, 379
Msp20I	TGGCCA	1 cut(s)	158
MspR9I	CCNGG	1 cut(s)	142
MvaI	CCWGG	1 cut(s)	142
MwoI	GCNNNNNNNGC	1 cut(s)	288
NcoI	CCATGG	1 cut(s)	153
NdeII	GATC	2 cut(s)	144, 340
NlaIII	CATG	1 cut(s)	157
NlaIV	GGNNCC	3 cut(s)	16, 138, 292
NmuCI	GTSAC	1 cut(s)	354
PkrI	GCNGC	1 cut(s)	25
PshAI	GACNNNNGTC	1 cut(s)	212
Psp6I	CCWGG	1 cut(s)	140
PspGI	CCWGG	1 cut(s)	140
PspN4I	GGNNCC	3 cut(s)	16, 138, 292
PspPI	GGNCC	1 cut(s)	251
PstNI	CAGNNNCTG	1 cut(s)	147
PsuI	RGATCY	1 cut(s)	144
SaqAI	TTAA	2 cut(s)	306, 379
SatI	GCNGC	1 cut(s)	24
Sau3AI	GATC	2 cut(s)	144, 340
Sau96I	GGNCC	1 cut(s)	251
ScrFI	CCNGG	1 cut(s)	142
SduI	GDGCHC	1 cut(s)	139
SetI	ASST	4 cut(s)	65, 225, 234, 336
SinI	GGWCC	1 cut(s)	251
Sse9I	AATT	4 cut(s)	53, 164, 200, 300
SspMI	CTAG	3 cut(s)	30, 102, 275
StyD4I	CCNGG	1 cut(s)	140
StyI	CCWWGG	3 cut(s)	18, 153, 159
TaaI	ACNGT	1 cut(s)	322
TaqI	TCGA	1 cut(s)	57
TasI	AATT	4 cut(s)	53, 164, 200, 300
Tru1I	TTAA	2 cut(s)	306, 379
Tru9I	TTAA	2 cut(s)	306, 379
TseFI	GTSAC	1 cut(s)	354
TseI	GCWGC	1 cut(s)	23
Tsp45I	GTSAC	1 cut(s)	354
TspDTI	ATGAA	1 cut(s)	78
VpaK11BI	GGWCC	1 cut(s)	251
XapI	RAATTY	1 cut(s)	53
XbaI	TCTAGA	1 cut(s)	274
XspI	CTAG	3 cut(s)	30, 102, 275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.