Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

271394 .. 274225

Gene Structure 2832 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGATGCGCTGAAGCTTTGGAGCCTATCCTCGCAGCCATTGAAGCACCTGTTCCGCGTTGCTTCCTCCACCACCACGACGACTCTCAGACGACCCTTTTCTCATTCTTCTTCGTATTCTAGAGTTGTCCTCCGCTGTTGCTCTTCTACCTCCATCTCCACCACTCCCGCCAACGCCGCCAGAGCCGGCGGCCGCAACCGGCGGGCATCCACATCTTCCTCCACCTCTGATAGAGACGCTGTTCGAGCCATTCGTTTGAAGAAGGTAGAAGAACTGAGGAGCAAAGGTTTGGAGCCATATGCTTATGGGTGGGAAAGGACTCACACTGCTAATCAGCTGCAAGATATATACAAGGATTTAGCGGACGGTGAAGAGGCAAAAGCCGACAGGGATGCTGTGTCCATTGCAGGAAGAATTGTGGCTCGCAGAGCGTTCGGAAAGCTTGCATTTTTGACACTGAGGGACGATTCCGGCACAATTCAGCTTTACTGTGAAAAGGAACGGCTTGCAGACGAACAGTTCGATCAGTTAAAGGCACTTGTTGATATTGGTGATATAGTTGGTGCTAGTGGATCCATCAAACGAACAGAGAAAGGGGAGCTTTCGATTTATGTGAATTCTTTTGCAATTCTTACAAAATCTCTACTCCCGCTGCCGGACAAGTATCATGGTCTAACAGATGTGGACAAGCGCTACCGTCAGCGGTATGTAGATATGATTGCTAATCCTGAGGTAGCTGATGTATTCCGGAAAAGAGCAAAGATTATATCGGAGATACGAAAGGCAGTGGAGTCTGTTGGTTTCGTTGAGGTTGAAACTCCAGTTCTGCAGGGAGCAGCTGGTGGTGCGGAAGCTAGGCCATTTGTTACACACCATAATTCACTTGGAAGGGACCTGTACTTGAGAATAGCAACTGAGCTCCACTTAAAGAGAATGCTGGTTGGTGGGTTTGAAAAAGTGTATGAGATTGGTCGAATATTCAGGAATGAAGGCATTTCAACTCGTCATAATCCTGAATTTACCACTATAGAGATGTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009791 GO:0009908 GO:0022414 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_2 tRNA_anti-codon

Protein Analysis

347

Amino Acids

38.72

Weight (kDa)

9.5

Isoelectric Point (pI)

39.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA_anti-codon	PF01336	133 - 210	7.5e-19	OB-fold nucleic acid binding domain
tRNA-synt_2	PF00152	228 - 346	3.7e-39	tRNA synthetases class II (D, K and N)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	57
AccIII	TCCGGA	1 cut(s)	747
AclWI	GGATC	2 cut(s)	567, 580
AcoI	YGGCCR	1 cut(s)	190
AcsI	RAATTY	2 cut(s)	616, 1016
AcuI	CTGAAG	1 cut(s)	32
AfaI	GTAC	1 cut(s)	899
AfeI	AGCGCT	1 cut(s)	692
AfiI	CCNNNNNNNGG	1 cut(s)	655
AgsI	TTSAA	5 cut(s)	43, 259, 815, 953, 999
AluBI	AGCT	9 cut(s)	16, 337, 442, 484, 601, 737, 839, 854, 919
AluI	AGCT	9 cut(s)	16, 337, 442, 484, 601, 737, 839, 854, 919
Alw21I	GWGCWC	1 cut(s)	921
Alw26I	GTCTC	1 cut(s)	228
AlwI	GGATC	2 cut(s)	567, 580
Aor13HI	TCCGGA	1 cut(s)	747
Aor51HI	AGCGCT	1 cut(s)	692
AoxI	GGCC	2 cut(s)	190, 857
ApeKI	GCWGC	4 cut(s)	34, 337, 652, 836
ApoI	RAATTY	2 cut(s)	616, 1016
ArsI	GACNNNNNNTTYG	2 cut(s)	503, 535
AspLEI	GCGC	2 cut(s)	10, 693
AspS9I	GGNCC	1 cut(s)	892
AsuHPI	GGTGA	2 cut(s)	380, 563
AvaII	GGWCC	1 cut(s)	892
AxyI	CCTNAGG	1 cut(s)	729
BamHI	GGATCC	1 cut(s)	572
BanII	GRGCYC	1 cut(s)	921
Bbv12I	GWGCWC	1 cut(s)	921
BbvI	GCAGC	4 cut(s)	46, 324, 639, 848
BccI	CCATC	2 cut(s)	161, 584
BceAI	ACGGC	1 cut(s)	518
BcgI	CGANNNNNNTGC	4 cut(s)	374, 408, 415, 449
BcoDI	GTCTC	1 cut(s)	228
BfaI	CTAG	3 cut(s)	120, 567, 855
BfmI	CTRYAG	2 cut(s)	827, 1026
BfoI	RGCGCY	1 cut(s)	694
BisI	GCNGC	7 cut(s)	35, 177, 190, 193, 338, 653, 837
BlsI	GCNGC	7 cut(s)	36, 178, 191, 194, 339, 654, 838
Bme18I	GGWCC	1 cut(s)	892
BmgT120I	GGNCC	1 cut(s)	892
BmiI	GGNNCC	4 cut(s)	23, 294, 574, 893
BmsI	GCATC	2 cut(s)	215, 382
BplI	GAGNNNNNCTC	2 cut(s)	114, 146
BpmI	CTGGAG	1 cut(s)	804
BpuEI	CTTGAG	1 cut(s)	922
BsaWI	WCCGGW	1 cut(s)	747
BsaXI	ACNNNNNCTCC	2 cut(s)	271, 301
Bsc4I	CCNNNNNNNGG	1 cut(s)	655
Bse118I	RCCGGY	2 cut(s)	185, 198
Bse1I	ACTGG	1 cut(s)	821
Bse21I	CCTNAGG	1 cut(s)	729
Bse3DI	GCAATG	1 cut(s)	402
BseAI	TCCGGA	1 cut(s)	747
BseGI	GGATG	3 cut(s)	10, 206, 397
BseLI	CCNNNNNNNGG	1 cut(s)	655
BseMI	GCAATG	1 cut(s)	402
BseMII	CTCAG	5 cut(s)	100, 266, 449, 720, 906
BseNI	ACTGG	1 cut(s)	821
BseRI	GAGGAG	1 cut(s)	292
BseX3I	CGGCCG	1 cut(s)	190
BseXI	GCAGC	4 cut(s)	46, 324, 639, 848
Bsh1236I	CGCG	1 cut(s)	57
Bsh1285I	CGRYCG	1 cut(s)	193
BshFI	GGCC	2 cut(s)	192, 859
BsiEI	CGRYCG	1 cut(s)	193
BsiHKAI	GWGCWC	1 cut(s)	921
BsiSI	CCGG	5 cut(s)	186, 199, 471, 656, 748
BslFI	GGGAC	2 cut(s)	476, 905
BslI	CCNNNNNNNGG	1 cut(s)	655
BsmAI	GTCTC	1 cut(s)	228
BsmBI	CGTCTC	1 cut(s)	228
BsmFI	GGGAC	2 cut(s)	476, 905
BsmI	GAATGC	1 cut(s)	939
BsnI	GGCC	2 cut(s)	192, 859
Bsp1286I	GDGCHC	1 cut(s)	921
Bsp13I	TCCGGA	1 cut(s)	747
Bsp143I	GATC	2 cut(s)	523, 572
BspANI	GGCC	2 cut(s)	192, 859
BspCNI	CTCAG	5 cut(s)	99, 267, 450, 721, 907
BspEI	TCCGGA	1 cut(s)	747
BspFNI	CGCG	1 cut(s)	57
BspLI	GGNNCC	4 cut(s)	23, 294, 574, 893
BspMAI	CTGCAG	1 cut(s)	831
BspPI	GGATC	2 cut(s)	567, 580
BspQI	GCTCTTC	1 cut(s)	148
BsrDI	GCAATG	1 cut(s)	402
BsrFI	RCCGGY	2 cut(s)	185, 198
BsrI	ACTGG	1 cut(s)	821
BssAI	RCCGGY	2 cut(s)	185, 198
BssMI	GATC	2 cut(s)	523, 572
Bst4CI	ACNGT	4 cut(s)	368, 491, 519, 698
Bst6I	CTCTTC	2 cut(s)	148, 366
BstC8I	GCNNGC	5 cut(s)	187, 204, 424, 444, 507
BstDEI	CTNAG	5 cut(s)	86, 275, 458, 729, 915
BstF5I	GGATG	3 cut(s)	10, 206, 397
BstFNI	CGCG	1 cut(s)	57
BstH2I	RGCGCY	1 cut(s)	694
BstHHI	GCGC	2 cut(s)	10, 693
BstKTI	GATC	2 cut(s)	526, 575
BstMAI	GTCTC	1 cut(s)	228
BstMBI	GATC	2 cut(s)	523, 572
BstMCI	CGRYCG	1 cut(s)	193
BstMWI	GCNNNNNNNGC	6 cut(s)	43, 176, 182, 245, 428, 845
BstSFI	CTRYAG	2 cut(s)	827, 1026
BstUI	CGCG	1 cut(s)	57
BstV1I	GCAGC	4 cut(s)	46, 324, 639, 848
BstX2I	RGATCY	1 cut(s)	572
BstYI	RGATCY	1 cut(s)	572
BstZI	CGGCCG	1 cut(s)	190
Bsu36I	CCTNAGG	1 cut(s)	729
BsuRI	GGCC	2 cut(s)	192, 859
BtsCI	GGATG	3 cut(s)	10, 206, 397
BtsI	GCAGTG	2 cut(s)	324, 792
BtsIMutI	CAGTG	3 cut(s)	324, 455, 792
Cac8I	GCNNGC	5 cut(s)	187, 204, 424, 444, 507
CciNI	GCGGCCGC	1 cut(s)	190
CfoI	GCGC	2 cut(s)	10, 693
Cfr10I	RCCGGY	2 cut(s)	185, 198
Cfr13I	GGNCC	1 cut(s)	892
CseI	GACGC	1 cut(s)	245
Csp6I	GTAC	1 cut(s)	898
CviAII	CATG	1 cut(s)	668
CviQI	GTAC	1 cut(s)	898
DdeI	CTNAG	5 cut(s)	86, 275, 458, 729, 915
DpnI	GATC	2 cut(s)	525, 574
DpnII	GATC	2 cut(s)	523, 572
EaeI	YGGCCR	1 cut(s)	190
EagI	CGGCCG	1 cut(s)	190
Eam1104I	CTCTTC	2 cut(s)	148, 366
EarI	CTCTTC	2 cut(s)	148, 366
Ecl136II	GAGCTC	1 cut(s)	919
EclXI	CGGCCG	1 cut(s)	190
Eco24I	GRGCYC	1 cut(s)	921
Eco47I	GGWCC	1 cut(s)	892
Eco47III	AGCGCT	1 cut(s)	692
Eco52I	CGGCCG	1 cut(s)	190
Eco53kI	GAGCTC	1 cut(s)	919
Eco57I	CTGAAG	1 cut(s)	32
Eco81I	CCTNAGG	1 cut(s)	729
EcoICRI	GAGCTC	1 cut(s)	919
EcoO109I	RGGNCCY	1 cut(s)	892
EcoRI	GAATTC	1 cut(s)	616
EcoT38I	GRGCYC	1 cut(s)	921
Esp3I	CGTCTC	1 cut(s)	228
FaeI	CATG	1 cut(s)	671
FalI	AAGNNNNNCTT	2 cut(s)	585, 617
FaqI	GGGAC	2 cut(s)	476, 905
FatI	CATG	1 cut(s)	667
FauI	CCCGC	3 cut(s)	175, 195, 657
FauNDI	CATATG	1 cut(s)	298
Fnu4HI	GCNGC	7 cut(s)	35, 177, 190, 193, 338, 653, 837
FokI	GGATG	3 cut(s)	17, 193, 404
FriOI	GRGCYC	1 cut(s)	921
Fsp4HI	GCNGC	7 cut(s)	35, 177, 190, 193, 338, 653, 837
FspBI	CTAG	3 cut(s)	120, 567, 855
GlaI	GCGC	2 cut(s)	9, 692
GluI	GCNGC	7 cut(s)	35, 177, 190, 193, 338, 653, 837
GsuI	CTGGAG	1 cut(s)	804
HaeII	RGCGCY	1 cut(s)	694
HaeIII	GGCC	2 cut(s)	192, 859
HapII	CCGG	5 cut(s)	186, 199, 471, 656, 748
HgaI	GACGC	1 cut(s)	245
HhaI	GCGC	2 cut(s)	10, 693
Hin1II	CATG	1 cut(s)	671
Hin6I	GCGC	2 cut(s)	8, 691
HinP1I	GCGC	2 cut(s)	8, 691
HindIII	AAGCTT	2 cut(s)	14, 440
HinfI	GANTC	4 cut(s)	82, 319, 467, 791
HpaII	CCGG	5 cut(s)	186, 199, 471, 656, 748
HphI	GGTGA	2 cut(s)	380, 563
Hpy166II	GTNNAC	1 cut(s)	685
Hpy188I	TCNGA	4 cut(s)	89, 229, 437, 772
Hpy188III	TCNNGA	5 cut(s)	120, 728, 748, 982, 1013
Hpy8I	GTNNAC	1 cut(s)	685
Hpy99I	CGWCG	1 cut(s)	82
HpyAV	CCTTC	3 cut(s)	256, 882, 983
HpyCH4III	ACNGT	4 cut(s)	368, 491, 519, 698
HpyCH4V	TGCA	6 cut(s)	340, 407, 446, 509, 626, 829
HpyF10VI	GCNNNNNNNGC	6 cut(s)	43, 176, 182, 245, 428, 845
HpyF3I	CTNAG	5 cut(s)	86, 275, 458, 729, 915
Hsp92II	CATG	1 cut(s)	671
HspAI	GCGC	2 cut(s)	8, 691
Kpn2I	TCCGGA	1 cut(s)	747
KroI	GCCGGC	1 cut(s)	185
KroNI	GCCGGC	1 cut(s)	187
Kzo9I	GATC	2 cut(s)	523, 572
LguI	GCTCTTC	1 cut(s)	148
LmnI	GCTCC	6 cut(s)	21, 279, 292, 598, 833, 924
Lsp1109I	GCAGC	4 cut(s)	46, 324, 639, 848
LweI	GCATC	2 cut(s)	215, 382
MaeI	CTAG	3 cut(s)	120, 567, 855
MaeIII	GTNAC	1 cut(s)	865
MalI	GATC	2 cut(s)	525, 574
MboI	GATC	2 cut(s)	523, 572
MboII	GAAGA	8 cut(s)	99, 102, 135, 207, 271, 281, 383, 423
MflI	RGATCY	1 cut(s)	572
MhlI	GDGCHC	1 cut(s)	921
MluCI	AATT	6 cut(s)	414, 477, 616, 627, 877, 1016
MlyI	GAGTC	3 cut(s)	76, 313, 800
MroI	TCCGGA	1 cut(s)	747
MroNI	GCCGGC	1 cut(s)	185
MseI	TTAA	3 cut(s)	530, 926, 1039
MspA1I	CMGCKG	5 cut(s)	135, 337, 652, 703, 839
MspI	CCGG	5 cut(s)	186, 199, 471, 656, 748
Mva1269I	GAATGC	1 cut(s)	939
MvnI	CGCG	1 cut(s)	57
MwoI	GCNNNNNNNGC	6 cut(s)	43, 176, 182, 245, 428, 845
NaeI	GCCGGC	1 cut(s)	187
NdeI	CATATG	1 cut(s)	298
NdeII	GATC	2 cut(s)	523, 572
NgoMIV	GCCGGC	1 cut(s)	185
NlaIII	CATG	1 cut(s)	671
NlaIV	GGNNCC	4 cut(s)	23, 294, 574, 893
NotI	GCGGCCGC	1 cut(s)	190
PciSI	GCTCTTC	1 cut(s)	148
PcsI	WCGNNNNNNNCGW	2 cut(s)	250, 519
PctI	GAATGC	1 cut(s)	939
PdiI	GCCGGC	1 cut(s)	187
PfeI	GAWTC	1 cut(s)	467
PkrI	GCNGC	7 cut(s)	36, 178, 191, 194, 339, 654, 838
PleI	GAGTC	3 cut(s)	76, 313, 799
PpsI	GAGTC	3 cut(s)	76, 313, 799
PpuMI	RGGWCCY	1 cut(s)	892
Psp124BI	GAGCTC	1 cut(s)	921
Psp5II	RGGWCCY	1 cut(s)	892
PspN4I	GGNNCC	4 cut(s)	23, 294, 574, 893
PspPI	GGNCC	1 cut(s)	892
PspPPI	RGGWCCY	1 cut(s)	892
PstI	CTGCAG	1 cut(s)	831
PsuI	RGATCY	1 cut(s)	572
PvuII	CAGCTG	2 cut(s)	337, 839
RsaI	GTAC	1 cut(s)	899
RsaNI	GTAC	1 cut(s)	898
SacI	GAGCTC	1 cut(s)	921
SapI	GCTCTTC	1 cut(s)	148
SaqAI	TTAA	3 cut(s)	530, 926, 1039
SatI	GCNGC	7 cut(s)	35, 177, 190, 193, 338, 653, 837
Sau3AI	GATC	2 cut(s)	523, 572
Sau96I	GGNCC	1 cut(s)	892
SchI	GAGTC	3 cut(s)	76, 313, 800
SduI	GDGCHC	1 cut(s)	921
SfaNI	GCATC	2 cut(s)	215, 382
SfcI	CTRYAG	2 cut(s)	827, 1026
SinI	GGWCC	1 cut(s)	892
SmlI	CTYRAG	1 cut(s)	901
SmoI	CTYRAG	1 cut(s)	901
Sse9I	AATT	6 cut(s)	414, 477, 616, 627, 877, 1016
SspI	AATATT	1 cut(s)	978
SspMI	CTAG	3 cut(s)	120, 567, 855
SstI	GAGCTC	1 cut(s)	921
TaaI	ACNGT	4 cut(s)	368, 491, 519, 698
TaqI	TCGA	4 cut(s)	244, 522, 605, 973
TasI	AATT	6 cut(s)	414, 477, 616, 627, 877, 1016
TatI	WGTACW	1 cut(s)	897
TauI	GCSGC	3 cut(s)	179, 192, 195
TfiI	GAWTC	1 cut(s)	467
Tru1I	TTAA	3 cut(s)	530, 926, 1039
Tru9I	TTAA	3 cut(s)	530, 926, 1039
TscAI	CASTG	3 cut(s)	331, 462, 792
TseI	GCWGC	4 cut(s)	34, 337, 652, 836
TspDTI	ATGAA	1 cut(s)	1002
TspRI	CASTG	3 cut(s)	331, 462, 792
VpaK11BI	GGWCC	1 cut(s)	892
XapI	RAATTY	2 cut(s)	616, 1016
XbaI	TCTAGA	1 cut(s)	119
XcmI	CCANNNNNNNNNTGG	1 cut(s)	881
XspI	CTAG	3 cut(s)	120, 567, 855

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.