pycom03g00430

Elongation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
N/A
Physical Location & Seq
Forward (+)
366402 .. 367217
816 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 318 bp
ATGCAGGCAGTGGCAAAGCTGAGCAAGAATCTCCCCCGCCCTCTCTTCCTCCTGCTCGCTCCCAGAACCTTAACCACCCTCACTTCTTCTTCTTCTTTATCACACTTGCTATCCTCACAGGGCTGTGACTCCGCCATCATGCAGACCACAAACACGTGTCTCACCGGAAGAACTCTGCTTCGTTCTCCCTGGTCCGCCATTCAATACCGCGGAGCCGTCGTCCAGGGCGCTGATGTGGAGGTTCGTGATCTTGACTCGGGGAACAAGACATCCCTACGATTGTCCACGGATGAGCAACTCGATAGTATGAAACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EFP EFP_N Elong-fact-P_C

Protein Analysis

106

Amino Acids

11.38

Weight (kDa)

9.23

Isoelectric Point (pI)

35.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 210
AciI CCGC 5 cut(s) 37, 132, 195, 208, 210
AcvI CACGTG 1 cut(s) 156
AflIII ACRYGT 2 cut(s) 153, 155
AgsI TTSAA 1 cut(s) 203
AjnI CCWGG 2 cut(s) 188, 222
AloI GAACNNNNNNTCC 2 cut(s) 254, 286
AluBI AGCT 1 cut(s) 19
AluI AGCT 1 cut(s) 19
Alw26I GTCTC 1 cut(s) 164
Ama87I CYCGRG 1 cut(s) 256
AspLEI GCGC 1 cut(s) 230
AspS9I GGNCC 1 cut(s) 192
AsuHPI GGTGA 1 cut(s) 154
AvaI CYCGRG 1 cut(s) 256
AvaII GGWCC 1 cut(s) 192
BbrPI CACGTG 1 cut(s) 156
BccI CCATC 1 cut(s) 143
BceAI ACGGC 1 cut(s) 200
BciT130I CCWGG 2 cut(s) 190, 224
BcoDI GTCTC 1 cut(s) 164
BfoI RGCGCY 1 cut(s) 231
BlpI GCTNAGC 1 cut(s) 20
Bme1390I CCNGG 2 cut(s) 190, 224
Bme18I GGWCC 1 cut(s) 192
BmeT110I CYCGRG 1 cut(s) 256
BmgT120I GGNCC 1 cut(s) 192
BmiI GGNNCC 1 cut(s) 214
BmrFI CCNGG 2 cut(s) 190, 224
Bpu1102I GCTNAGC 1 cut(s) 20
BsaAI YACGTR 1 cut(s) 156
BsaJI CCNNGG 4 cut(s) 188, 208, 223, 285
BsaWI WCCGGW 1 cut(s) 164
BsaXI ACNNNNNCTCC 2 cut(s) 204, 234
BseBI CCWGG 2 cut(s) 190, 224
BseDI CCNNGG 4 cut(s) 188, 208, 223, 285
BseGI GGATG 2 cut(s) 269, 295
BseMII CTCAG 1 cut(s) 11
Bsh1236I CGCG 1 cut(s) 210
BsiHKCI CYCGRG 1 cut(s) 256
BsiSI CCGG 1 cut(s) 165
BsmAI GTCTC 1 cut(s) 164
BsoBI CYCGRG 1 cut(s) 256
Bsp143I GATC 1 cut(s) 247
Bsp1720I GCTNAGC 1 cut(s) 20
BspACI CCGC 5 cut(s) 37, 132, 195, 208, 210
BspCNI CTCAG 1 cut(s) 12
BspFNI CGCG 1 cut(s) 210
BspLI GGNNCC 1 cut(s) 214
BssECI CCNNGG 4 cut(s) 188, 208, 223, 285
BssMI GATC 1 cut(s) 247
Bst2UI CCWGG 2 cut(s) 190, 224
Bst6I CTCTTC 1 cut(s) 50
BstBAI YACGTR 1 cut(s) 156
BstC8I GCNNGC 2 cut(s) 6, 57
BstDEI CTNAG 1 cut(s) 20
BstDSI CCRYGG 2 cut(s) 208, 285
BstF5I GGATG 2 cut(s) 269, 295
BstFNI CGCG 1 cut(s) 210
BstH2I RGCGCY 1 cut(s) 231
BstHHI GCGC 1 cut(s) 230
BstKTI GATC 1 cut(s) 250
BstMAI GTCTC 1 cut(s) 164
BstMBI GATC 1 cut(s) 247
BstNI CCWGG 2 cut(s) 190, 224
BstSCI CCNGG 2 cut(s) 188, 222
BstUI CGCG 1 cut(s) 210
BtgI CCRYGG 2 cut(s) 208, 285
BtsCI GGATG 2 cut(s) 269, 295
BtsI GCAGTG 1 cut(s) 15
BtsIMutI CAGTG 1 cut(s) 15
Cac8I GCNNGC 2 cut(s) 6, 57
CfoI GCGC 1 cut(s) 230
Cfr13I GGNCC 1 cut(s) 192
Cfr42I CCGCGG 1 cut(s) 211
CviAII CATG 1 cut(s) 139
CviJI RGCY 3 cut(s) 19, 123, 215
CviKI_1 RGCY 3 cut(s) 19, 123, 215
DdeI CTNAG 1 cut(s) 20
DpnI GATC 1 cut(s) 249
DpnII GATC 1 cut(s) 247
Eam1104I CTCTTC 1 cut(s) 50
EarI CTCTTC 1 cut(s) 50
EciI GGCGGA 2 cut(s) 121, 184
Eco47I GGWCC 1 cut(s) 192
Eco72I CACGTG 1 cut(s) 156
Eco88I CYCGRG 1 cut(s) 256
EcoRII CCWGG 2 cut(s) 188, 222
FaeI CATG 1 cut(s) 142
FaiI YATR 2 cut(s) 140, 308
FatI CATG 1 cut(s) 138
FauI CCCGC 1 cut(s) 44
FokI GGATG 2 cut(s) 256, 302
GlaI GCGC 1 cut(s) 229
HaeII RGCGCY 1 cut(s) 231
HapII CCGG 1 cut(s) 165
HhaI GCGC 1 cut(s) 230
Hin1II CATG 1 cut(s) 142
Hin6I GCGC 1 cut(s) 228
HinP1I GCGC 1 cut(s) 228
HinfI GANTC 3 cut(s) 28, 128, 254
HpaII CCGG 1 cut(s) 165
HphI GGTGA 1 cut(s) 154
Hpy166II GTNNAC 1 cut(s) 285
Hpy188III TCNNGA 2 cut(s) 245, 251
Hpy8I GTNNAC 1 cut(s) 285
Hpy99I CGWCG 1 cut(s) 221
HpyCH4IV ACGT 1 cut(s) 155
HpyCH4V TGCA 2 cut(s) 4, 142
HpyF3I CTNAG 1 cut(s) 20
HpySE526I ACGT 1 cut(s) 155
Hsp92II CATG 1 cut(s) 142
HspAI GCGC 1 cut(s) 228
KspI CCGCGG 1 cut(s) 211
Kzo9I GATC 1 cut(s) 247
LmnI GCTCC 2 cut(s) 64, 212
LpnPI CCDG 8 cut(s) 65, 76, 104, 175, 178, 202, 209, 236
MaeII ACGT 1 cut(s) 155
MaeIII GTNAC 1 cut(s) 125
MalI GATC 1 cut(s) 249
MboI GATC 1 cut(s) 247
MboII GAAGA 5 cut(s) 37, 78, 81, 84, 180
MlyI GAGTC 2 cut(s) 122, 248
MnlI CCTC 5 cut(s) 51, 59, 89, 124, 232
MseI TTAA 2 cut(s) 71, 316
MspA1I CMGCKG 1 cut(s) 210
MspI CCGG 1 cut(s) 165
MspR9I CCNGG 2 cut(s) 190, 224
MvaI CCWGG 2 cut(s) 190, 224
MvnI CGCG 1 cut(s) 210
NdeII GATC 1 cut(s) 247
NlaIII CATG 1 cut(s) 142
NlaIV GGNNCC 1 cut(s) 214
NmuCI GTSAC 1 cut(s) 125
PfeI GAWTC 1 cut(s) 28
PleI GAGTC 2 cut(s) 122, 248
PmaCI CACGTG 1 cut(s) 156
PmlI CACGTG 1 cut(s) 156
PpsI GAGTC 2 cut(s) 122, 248
Ppu21I YACGTR 1 cut(s) 156
Psp6I CCWGG 2 cut(s) 188, 222
PspCI CACGTG 1 cut(s) 156
PspGI CCWGG 2 cut(s) 188, 222
PspN4I GGNNCC 1 cut(s) 214
PspPI GGNCC 1 cut(s) 192
SacII CCGCGG 1 cut(s) 211
SaqAI TTAA 2 cut(s) 71, 316
Sau3AI GATC 1 cut(s) 247
Sau96I GGNCC 1 cut(s) 192
SchI GAGTC 2 cut(s) 122, 248
ScrFI CCNGG 2 cut(s) 190, 224
SetI ASST 4 cut(s) 21, 71, 158, 243
Sfr303I CCGCGG 1 cut(s) 211
SgrBI CCGCGG 1 cut(s) 211
SinI GGWCC 1 cut(s) 192
SsiI CCGC 5 cut(s) 37, 132, 195, 208, 210
StyD4I CCNGG 2 cut(s) 188, 222
TaiI ACGT 1 cut(s) 158
TaqI TCGA 1 cut(s) 300
TfiI GAWTC 1 cut(s) 28
Tru1I TTAA 2 cut(s) 71, 316
Tru9I TTAA 2 cut(s) 71, 316
TscAI CASTG 1 cut(s) 15
TseFI GTSAC 1 cut(s) 125
Tsp45I GTSAC 1 cut(s) 125
TspGWI ACGGA 1 cut(s) 302
TspRI CASTG 1 cut(s) 15
VpaK11BI GGWCC 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.