Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

688915 .. 689448

Gene Structure 534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g00870.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGGTTACGTCACTTCCGTGTCCATCATCGTTGAAGCCTCTGCTTCAGTCACAACTAAATCAACTCACAACCCCAACCTCCACCACCACAAAACATCAAAACATCAAAACCCTTTTGCCTCTGACTGTCTCAACTCTCCACGAAACAAGTCATCTTCTCCCACTGGACTTGGTCTCCTCCTTCAATCATCAATATTCCGAGAGCTGGTTCAGAAGTACTCAAATTTCTCCGAGGATGACAGCACCGACGGCGAGGAACCAAAGAACCAACCCCAGGTGGGTAGCGATGATGAGTACAGTGGAATCTTATATGAGAGAACCGGTGACAACCCATTTGTTTGCTCCTCCACCACCGCCGTAGACGACGCTTTCGCCACTCAGCCGGCGTCGGAGGCCTTCTTTCCTCCGTCGATTTATGCCGAATCGAACAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006109 GO:0006110 GO:0006140 GO:0006355 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009743 GO:0009744 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019220 GO:0019222 GO:0019432 GO:0030808 GO:0030811 GO:0031323 GO:0031326 GO:0031329 GO:0034285 GO:0042221 GO:0042325 GO:0043467 GO:0043470 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0048518 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051193 GO:0051196 GO:0051252 GO:0060255 GO:0062012 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1900371 GO:1900542 GO:1901363 GO:1901576 GO:1901700 GO:1901957 GO:1901959 GO:1903506 GO:1903578 GO:2000112 GO:2001141 GO:2001169

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

145

Amino Acids

15.59

Weight (kDa)

4.78

Isoelectric Point (pI)

48.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	360
AciI	CCGC	1 cut(s)	354
AcsI	RAATTY	1 cut(s)	223
AcuI	CTGAAG	1 cut(s)	30
AcyI	GRCGYC	1 cut(s)	386
AfaI	GTAC	2 cut(s)	218, 296
AfiI	CCNNNNNNNGG	3 cut(s)	205, 274, 278
AgeI	ACCGGT	1 cut(s)	320
AgsI	TTSAA	2 cut(s)	35, 185
AjnI	CCWGG	1 cut(s)	273
AleI	CACNNNNGTG	1 cut(s)	17
AluBI	AGCT	2 cut(s)	205, 432
AluI	AGCT	2 cut(s)	205, 432
Alw26I	GTCTC	2 cut(s)	134, 179
AoxI	GGCC	1 cut(s)	393
ApoI	RAATTY	1 cut(s)	223
ArsI	GACNNNNNNTTYG	4 cut(s)	317, 349, 353, 385
AsiGI	ACCGGT	1 cut(s)	320
AsuHPI	GGTGA	1 cut(s)	335
BccI	CCATC	1 cut(s)	32
BceAI	ACGGC	2 cut(s)	265, 341
BciT130I	CCWGG	1 cut(s)	275
BcoDI	GTCTC	2 cut(s)	134, 179
BfaI	CTAG	1 cut(s)	433
BmcAI	AGTACT	1 cut(s)	218
Bme1390I	CCNGG	1 cut(s)	275
BmiI	GGNNCC	1 cut(s)	258
BmrFI	CCNGG	1 cut(s)	275
BsaHI	GRCGYC	1 cut(s)	386
BsaI	GGTCTC	1 cut(s)	179
BsaJI	CCNNGG	2 cut(s)	231, 273
BsaWI	WCCGGW	1 cut(s)	320
BsaXI	ACNNNNNCTCC	2 cut(s)	159, 189
Bsc4I	CCNNNNNNNGG	3 cut(s)	205, 274, 278
Bse118I	RCCGGY	2 cut(s)	320, 382
Bse1I	ACTGG	1 cut(s)	169
BseBI	CCWGG	1 cut(s)	275
BseDI	CCNNGG	2 cut(s)	231, 273
BseGI	GGATG	1 cut(s)	241
BseLI	CCNNNNNNNGG	3 cut(s)	205, 274, 278
BseMII	CTCAG	1 cut(s)	392
BseNI	ACTGG	1 cut(s)	169
BseRI	GAGGAG	2 cut(s)	167, 334
BshFI	GGCC	1 cut(s)	395
BshTI	ACCGGT	1 cut(s)	320
BsiSI	CCGG	2 cut(s)	321, 383
BslI	CCNNNNNNNGG	3 cut(s)	205, 274, 278
BsmAI	GTCTC	2 cut(s)	134, 179
BsnI	GGCC	1 cut(s)	395
Bso31I	GGTCTC	1 cut(s)	179
BspACI	CCGC	1 cut(s)	354
BspANI	GGCC	1 cut(s)	395
BspCNI	CTCAG	1 cut(s)	391
BspLI	GGNNCC	1 cut(s)	258
BspTNI	GGTCTC	1 cut(s)	179
BsrFI	RCCGGY	2 cut(s)	320, 382
BsrI	ACTGG	1 cut(s)	169
BssAI	RCCGGY	2 cut(s)	320, 382
BssECI	CCNNGG	2 cut(s)	231, 273
BssNI	GRCGYC	1 cut(s)	386
Bst2UI	CCWGG	1 cut(s)	275
Bst4CI	ACNGT	2 cut(s)	128, 299
BstACI	GRCGYC	1 cut(s)	386
BstC8I	GCNNGC	1 cut(s)	384
BstDEI	CTNAG	1 cut(s)	378
BstF5I	GGATG	1 cut(s)	241
BstMAI	GTCTC	2 cut(s)	134, 179
BstMWI	GCNNNNNNNGC	2 cut(s)	249, 392
BstNI	CCWGG	1 cut(s)	275
BstSCI	CCNGG	1 cut(s)	273
BsuRI	GGCC	1 cut(s)	395
BtgZI	GCGATG	1 cut(s)	300
BtsCI	GGATG	1 cut(s)	241
BtsIMutI	CAGTG	2 cut(s)	162, 304
Cac8I	GCNNGC	1 cut(s)	384
Cfr10I	RCCGGY	2 cut(s)	320, 382
CseI	GACGC	2 cut(s)	374, 375
Csp6I	GTAC	2 cut(s)	217, 295
CspAI	ACCGGT	1 cut(s)	320
CspCI	CAANNNNNGTGG	2 cut(s)	151, 186
CviJI	RGCY	5 cut(s)	38, 205, 382, 395, 432
CviKI_1	RGCY	5 cut(s)	38, 205, 382, 395, 432
CviQI	GTAC	2 cut(s)	217, 295
DdeI	CTNAG	1 cut(s)	378
Eco147I	AGGCCT	1 cut(s)	395
Eco31I	GGTCTC	1 cut(s)	179
Eco57I	CTGAAG	1 cut(s)	30
EcoRII	CCWGG	1 cut(s)	273
FaiI	YATR	3 cut(s)	310, 312, 417
FblI	GTMKAC	1 cut(s)	360
FokI	GGATG	1 cut(s)	248
FspBI	CTAG	1 cut(s)	433
HaeIII	GGCC	1 cut(s)	395
HapII	CCGG	2 cut(s)	321, 383
HgaI	GACGC	2 cut(s)	374, 375
Hin1I	GRCGYC	1 cut(s)	386
HinfI	GANTC	2 cut(s)	303, 422
HpaII	CCGG	2 cut(s)	321, 383
HphI	GGTGA	1 cut(s)	335
Hpy166II	GTNNAC	1 cut(s)	361
Hpy188I	TCNGA	5 cut(s)	124, 200, 213, 232, 391
Hpy8I	GTNNAC	1 cut(s)	361
Hpy99I	CGWCG	4 cut(s)	251, 368, 391, 412
HpyAV	CCTTC	2 cut(s)	191, 406
HpyCH4III	ACNGT	2 cut(s)	128, 299
HpyCH4IV	ACGT	1 cut(s)	9
HpyF10VI	GCNNNNNNNGC	2 cut(s)	249, 392
HpyF3I	CTNAG	1 cut(s)	378
HpySE526I	ACGT	1 cut(s)	9
Hsp92I	GRCGYC	1 cut(s)	386
KroI	GCCGGC	1 cut(s)	382
KroNI	GCCGGC	1 cut(s)	384
LmnI	GCTCC	1 cut(s)	347
LpnPI	CCDG	6 cut(s)	150, 191, 260, 287, 334, 396
MaeI	CTAG	1 cut(s)	433
MaeII	ACGT	1 cut(s)	9
MaeIII	GTNAC	4 cut(s)	5, 10, 49, 323
MboII	GAAGA	1 cut(s)	147
MluCI	AATT	1 cut(s)	223
MmeI	TCCRAC	1 cut(s)	369
MnlI	CCTC	9 cut(s)	49, 89, 130, 188, 226, 247, 355, 385, 414
MroNI	GCCGGC	1 cut(s)	382
MslI	CAYNNNNRTG	1 cut(s)	17
MspI	CCGG	2 cut(s)	321, 383
MspR9I	CCNGG	1 cut(s)	275
MvaI	CCWGG	1 cut(s)	275
MwoI	GCNNNNNNNGC	2 cut(s)	249, 392
NaeI	GCCGGC	1 cut(s)	384
NgoMIV	GCCGGC	1 cut(s)	382
NlaIV	GGNNCC	1 cut(s)	258
NmuCI	GTSAC	3 cut(s)	10, 49, 323
OliI	CACNNNNGTG	1 cut(s)	17
PceI	AGGCCT	1 cut(s)	395
PcsI	WCGNNNNNNNCGW	1 cut(s)	15
PdiI	GCCGGC	1 cut(s)	384
PfeI	GAWTC	2 cut(s)	303, 422
PflFI	GACNNNGTC	1 cut(s)	171
PinAI	ACCGGT	1 cut(s)	320
Psp6I	CCWGG	1 cut(s)	273
PspGI	CCWGG	1 cut(s)	273
PspN4I	GGNNCC	1 cut(s)	258
PsyI	GACNNNGTC	1 cut(s)	171
RsaI	GTAC	2 cut(s)	218, 296
RsaNI	GTAC	2 cut(s)	217, 295
RseI	CAYNNNNRTG	1 cut(s)	17
ScaI	AGTACT	1 cut(s)	218
ScrFI	CCNGG	1 cut(s)	275
SetI	ASST	5 cut(s)	12, 81, 207, 279, 434
SmiMI	CAYNNNNRTG	1 cut(s)	17
Sse9I	AATT	1 cut(s)	223
SseBI	AGGCCT	1 cut(s)	395
SsiI	CCGC	1 cut(s)	354
SspI	AATATT	1 cut(s)	195
SspMI	CTAG	1 cut(s)	433
StuI	AGGCCT	1 cut(s)	395
StyD4I	CCNGG	1 cut(s)	273
TaaI	ACNGT	2 cut(s)	128, 299
TaiI	ACGT	1 cut(s)	12
TaqI	TCGA	2 cut(s)	410, 425
TasI	AATT	1 cut(s)	223
TatI	WGTACW	2 cut(s)	216, 294
TfiI	GAWTC	2 cut(s)	303, 422
TscAI	CASTG	2 cut(s)	169, 304
TseFI	GTSAC	3 cut(s)	10, 49, 323
Tsp45I	GTSAC	3 cut(s)	10, 49, 323
TspGWI	ACGGA	2 cut(s)	7, 396
TspRI	CASTG	2 cut(s)	169, 304
Tth111I	GACNNNGTC	1 cut(s)	171
XapI	RAATTY	1 cut(s)	223
XmiI	GTMKAC	1 cut(s)	360
XspI	CTAG	1 cut(s)	433
ZrmI	AGTACT	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.