Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

1002588 .. 1003127

Gene Structure 540 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGAATGTTTACCTTTTGTTTAGTTATTGGATTGTCTCTTGTAGGCTAACATGCATCTTTAGCTTAACCTCGATGAATTATTTGTGGCAAGAGCCGCTAGATAAACTGCCTGTAAAAATTTTCTTGGTACCATTGAATAAAAATGTTAGCTTTTCCTCCATGTTTCAAATTCTAGTTTCTCATTATTTTTTTTTAATTCTGGAAATTGAATTCAGTTTAAAACGCGCCAGATCATTCCGAAAGGTTTATGAGTGGAAGTTCATGAACTGTCTTGAGCTATGGACTAGAGCTGTCTCTCCCTATGGCACAGAACCTGAGTTTAGGCCTGTTGCGTATCCTCTGGCTCAAATAATTTATGGGGTAGCCTGTCTAGTTCCAACAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0008150 GO:0022613 GO:0030684 GO:0030686 GO:0030687 GO:0030689 GO:0030690 GO:0030691 GO:0031974 GO:0031981 GO:0032991 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Noc2

Protein Analysis

129

Amino Acids

15.14

Weight (kDa)

8.95

Isoelectric Point (pI)

52.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Noc2	PF03715	70 - 128	5.2e-14	Noc2p family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	127
AccB1I	GGYRCC	1 cut(s)	127
AccII	CGCG	1 cut(s)	225
AciI	CCGC	1 cut(s)	95
AcsI	RAATTY	3 cut(s)	117, 168, 209
AfaI	GTAC	1 cut(s)	129
AgsI	TTSAA	3 cut(s)	136, 167, 209
AluBI	AGCT	5 cut(s)	63, 150, 277, 290, 383
AluI	AGCT	5 cut(s)	63, 150, 277, 290, 383
Alw26I	GTCTC	2 cut(s)	40, 298
AlwNI	CAGNNNCTG	1 cut(s)	314
AoxI	GGCC	1 cut(s)	323
ApoI	RAATTY	3 cut(s)	117, 168, 209
Asp718I	GGTACC	1 cut(s)	127
AspLEI	GCGC	1 cut(s)	227
BanI	GGYRCC	1 cut(s)	127
BciVI	GTATCC	1 cut(s)	345
BcoDI	GTCTC	2 cut(s)	40, 298
BfaI	CTAG	4 cut(s)	98, 173, 285, 371
BfuI	GTATCC	1 cut(s)	345
BisI	GCNGC	1 cut(s)	95
BlsI	GCNGC	1 cut(s)	96
BmiI	GGNNCC	1 cut(s)	129
BmsI	GCATC	1 cut(s)	63
BpuEI	CTTGAG	1 cut(s)	293
BseMII	CTCAG	1 cut(s)	306
Bsh1236I	CGCG	1 cut(s)	225
BshFI	GGCC	1 cut(s)	325
BshNI	GGYRCC	1 cut(s)	127
BsmAI	GTCTC	2 cut(s)	40, 298
BsnI	GGCC	1 cut(s)	325
Bsp143I	GATC	1 cut(s)	230
BspACI	CCGC	1 cut(s)	95
BspANI	GGCC	1 cut(s)	325
BspCNI	CTCAG	1 cut(s)	307
BspFNI	CGCG	1 cut(s)	225
BspHI	TCATGA	1 cut(s)	261
BspLI	GGNNCC	1 cut(s)	129
BspT107I	GGYRCC	1 cut(s)	127
BssMI	GATC	1 cut(s)	230
Bst4CI	ACNGT	1 cut(s)	269
BstDEI	CTNAG	1 cut(s)	315
BstFNI	CGCG	1 cut(s)	225
BstHHI	GCGC	1 cut(s)	227
BstKTI	GATC	1 cut(s)	233
BstMAI	GTCTC	2 cut(s)	40, 298
BstMBI	GATC	1 cut(s)	230
BstMWI	GCNNNNNNNGC	2 cut(s)	60, 94
BstNSI	RCATGY	1 cut(s)	54
BstUI	CGCG	1 cut(s)	225
BsuI	GTATCC	1 cut(s)	345
BsuRI	GGCC	1 cut(s)	325
CaiI	CAGNNNCTG	1 cut(s)	314
CciI	TCATGA	1 cut(s)	261
CfoI	GCGC	1 cut(s)	227
Csp6I	GTAC	1 cut(s)	128
CviAII	CATG	3 cut(s)	51, 160, 262
CviQI	GTAC	1 cut(s)	128
DdeI	CTNAG	1 cut(s)	315
DpnI	GATC	1 cut(s)	232
DpnII	GATC	1 cut(s)	230
DraI	TTTAAA	1 cut(s)	219
Eco147I	AGGCCT	1 cut(s)	325
EcoRI	GAATTC	1 cut(s)	209
EcoT22I	ATGCAT	1 cut(s)	56
FaeI	CATG	3 cut(s)	54, 163, 265
FaiI	YATR	7 cut(s)	52, 161, 249, 263, 280, 303, 357
FatI	CATG	3 cut(s)	50, 159, 261
Fnu4HI	GCNGC	1 cut(s)	95
Fsp4HI	GCNGC	1 cut(s)	95
FspBI	CTAG	4 cut(s)	98, 173, 285, 371
GlaI	GCGC	1 cut(s)	226
GluI	GCNGC	1 cut(s)	95
HaeIII	GGCC	1 cut(s)	325
HhaI	GCGC	1 cut(s)	227
Hin1II	CATG	3 cut(s)	54, 163, 265
Hin6I	GCGC	1 cut(s)	225
HinP1I	GCGC	1 cut(s)	225
Hpy166II	GTNNAC	1 cut(s)	10
Hpy188I	TCNGA	1 cut(s)	239
Hpy188III	TCNNGA	3 cut(s)	200, 262, 272
Hpy8I	GTNNAC	1 cut(s)	10
HpyCH4III	ACNGT	1 cut(s)	269
HpyCH4V	TGCA	1 cut(s)	54
HpyF10VI	GCNNNNNNNGC	2 cut(s)	60, 94
HpyF3I	CTNAG	1 cut(s)	315
Hsp92II	CATG	3 cut(s)	54, 163, 265
HspAI	GCGC	1 cut(s)	225
KpnI	GGTACC	1 cut(s)	131
Kzo9I	GATC	1 cut(s)	230
LpnPI	CCDG	7 cut(s)	123, 185, 241, 326, 327, 339, 379
LweI	GCATC	1 cut(s)	63
MaeI	CTAG	4 cut(s)	98, 173, 285, 371
MalI	GATC	1 cut(s)	232
MboI	GATC	1 cut(s)	230
MluCI	AATT	7 cut(s)	76, 117, 168, 195, 204, 209, 351
MnlI	CCTC	3 cut(s)	79, 166, 348
Mph1103I	ATGCAT	1 cut(s)	56
MseI	TTAA	3 cut(s)	65, 194, 218
MvnI	CGCG	1 cut(s)	225
MwoI	GCNNNNNNNGC	2 cut(s)	60, 94
NdeII	GATC	1 cut(s)	230
NlaIII	CATG	3 cut(s)	54, 163, 265
NlaIV	GGNNCC	1 cut(s)	129
NsiI	ATGCAT	1 cut(s)	56
NspI	RCATGY	1 cut(s)	54
PagI	TCATGA	1 cut(s)	261
PceI	AGGCCT	1 cut(s)	325
PkrI	GCNGC	1 cut(s)	96
PspN4I	GGNNCC	1 cut(s)	129
PstNI	CAGNNNCTG	1 cut(s)	314
RsaI	GTAC	1 cut(s)	129
RsaNI	GTAC	1 cut(s)	128
SaqAI	TTAA	3 cut(s)	65, 194, 218
SatI	GCNGC	1 cut(s)	95
Sau3AI	GATC	1 cut(s)	230
SetI	ASST	9 cut(s)	15, 65, 71, 152, 246, 279, 292, 316, 385
SfaNI	GCATC	1 cut(s)	63
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
Sse9I	AATT	7 cut(s)	76, 117, 168, 195, 204, 209, 351
SseBI	AGGCCT	1 cut(s)	325
SsiI	CCGC	1 cut(s)	95
SspMI	CTAG	4 cut(s)	98, 173, 285, 371
StuI	AGGCCT	1 cut(s)	325
TaaI	ACNGT	1 cut(s)	269
TaqI	TCGA	1 cut(s)	71
TasI	AATT	7 cut(s)	76, 117, 168, 195, 204, 209, 351
TauI	GCSGC	1 cut(s)	97
Tru1I	TTAA	3 cut(s)	65, 194, 218
Tru9I	TTAA	3 cut(s)	65, 194, 218
TspDTI	ATGAA	4 cut(s)	17, 89, 250, 278
XapI	RAATTY	3 cut(s)	117, 168, 209
XceI	RCATGY	1 cut(s)	54
XspI	CTAG	4 cut(s)	98, 173, 285, 371
Zsp2I	ATGCAT	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.