Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

1003206 .. 1003997

Gene Structure 792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGCTGCTTTTGGACATGCTTGAGATTAAACAGTTGAACAGATCCACCACTGGTGGTGTTGGCAAAGCTATTGATTTGCGCACTGTACTGAAGGTGTATTTTAGTGTGGACATTTTCTTTCAGGTTAGCAAGCCAACCCTGAAGACCAGAGCATTTCAGGAAGCGTGTGTGTTATCTGTTGGAGACGAGCTTGCTGAACATTTAGCTCAGTCGAGCTTTTCTGTTGCTTTCCCCGAGTTGTCTTTTATTCCAGTAACTGTACGATTGAGTACCTTCTGCAAATCCACCAAGGTTGAGAGGTTTCGGAAAGCAATGAAGGAGCTCATTCGTCAGGTACGTGATGTGTGGACTATCGATTGGTTGAAGAAGTTTTTAATACTCTTTCATCTGTTAATAATTACATCTTTTAAATGTTGGAAAACCTTGTTGTACATAGCTAATTTTACAAATGAAAGGCGTATGTCAATTTCTTTTCTCCCAAATGATCCTGCAGCTGCGTATTTCCTTGAGGTCTGCCGTCTGCCCTTCCGTAATTTTCTTCTCTCATGTGATTTTGCCATCAATGTATTATATGTACGTTTGCTAAATTGTTACCAGCCGATAACCACAAATGCCTATTTCTTGGATCTTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0008150 GO:0022613 GO:0030684 GO:0030686 GO:0030687 GO:0030689 GO:0030690 GO:0030691 GO:0031974 GO:0031981 GO:0032991 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Noc2

Protein Analysis

212

Amino Acids

24.46

Weight (kDa)

9.28

Isoelectric Point (pI)

28.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Noc2	PF03715	2 - 114	7.6e-18	Noc2p family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	80
AclWI	GGATC	3 cut(s)	36, 479, 633
AcuI	CTGAAG	2 cut(s)	110, 161
AfaI	GTAC	6 cut(s)	87, 261, 271, 336, 431, 576
AgsI	TTSAA	2 cut(s)	37, 364
AluBI	AGCT	7 cut(s)	68, 190, 206, 216, 322, 437, 494
AluI	AGCT	7 cut(s)	68, 190, 206, 216, 322, 437, 494
Alw21I	GWGCWC	1 cut(s)	324
Alw26I	GTCTC	1 cut(s)	177
AlwI	GGATC	3 cut(s)	36, 479, 633
AlwNI	CAGNNNCTG	1 cut(s)	257
Ama87I	CYCGRG	1 cut(s)	233
ApeKI	GCWGC	3 cut(s)	4, 491, 494
AspLEI	GCGC	1 cut(s)	81
AvaI	CYCGRG	1 cut(s)	233
BanII	GRGCYC	1 cut(s)	324
BbsI	GAAGAC	1 cut(s)	149
Bbv12I	GWGCWC	1 cut(s)	324
BbvI	GCAGC	2 cut(s)	481, 503
BccI	CCATC	1 cut(s)	566
BceAI	ACGGC	1 cut(s)	501
BcoDI	GTCTC	1 cut(s)	177
BfmI	CTRYAG	1 cut(s)	489
BisI	GCNGC	3 cut(s)	5, 492, 495
BlsI	GCNGC	3 cut(s)	6, 493, 496
BmeT110I	CYCGRG	1 cut(s)	233
BpiI	GAAGAC	1 cut(s)	149
BpuEI	CTTGAG	2 cut(s)	41, 527
Bsa29I	ATCGAT	1 cut(s)	354
BsaAI	YACGTR	1 cut(s)	338
BsaJI	CCNNGG	1 cut(s)	288
Bse1I	ACTGG	2 cut(s)	55, 251
Bse3DI	GCAATG	1 cut(s)	318
BseCI	ATCGAT	1 cut(s)	354
BseDI	CCNNGG	1 cut(s)	288
BseMI	GCAATG	1 cut(s)	318
BseMII	CTCAG	1 cut(s)	221
BseNI	ACTGG	2 cut(s)	55, 251
BseXI	GCAGC	2 cut(s)	481, 503
BshVI	ATCGAT	1 cut(s)	354
BsiHKAI	GWGCWC	1 cut(s)	324
BsiHKCI	CYCGRG	1 cut(s)	233
BsmAI	GTCTC	1 cut(s)	177
BsmBI	CGTCTC	1 cut(s)	177
BsoBI	CYCGRG	1 cut(s)	233
Bsp1286I	GDGCHC	1 cut(s)	324
Bsp1407I	TGTACA	1 cut(s)	429
Bsp143I	GATC	3 cut(s)	41, 484, 625
BspCNI	CTCAG	1 cut(s)	220
BspDI	ATCGAT	1 cut(s)	354
BspHI	TCATGA	1 cut(s)	632
BspMAI	CTGCAG	1 cut(s)	493
BspPI	GGATC	3 cut(s)	36, 479, 633
BsrDI	GCAATG	1 cut(s)	318
BsrGI	TGTACA	1 cut(s)	429
BsrI	ACTGG	2 cut(s)	55, 251
BssECI	CCNNGG	1 cut(s)	288
BssMI	GATC	3 cut(s)	41, 484, 625
BssT1I	CCWWGG	1 cut(s)	288
Bst4CI	ACNGT	3 cut(s)	33, 85, 259
BstAUI	TGTACA	1 cut(s)	429
BstBAI	YACGTR	1 cut(s)	338
BstC8I	GCNNGC	2 cut(s)	131, 192
BstDEI	CTNAG	1 cut(s)	207
BstHHI	GCGC	1 cut(s)	81
BstKTI	GATC	3 cut(s)	44, 487, 628
BstMAI	GTCTC	1 cut(s)	177
BstMBI	GATC	3 cut(s)	41, 484, 625
BstNSI	RCATGY	1 cut(s)	19
BstSFI	CTRYAG	1 cut(s)	489
BstV1I	GCAGC	2 cut(s)	481, 503
BstV2I	GAAGAC	1 cut(s)	149
BstX2I	RGATCY	2 cut(s)	41, 625
BstYI	RGATCY	2 cut(s)	41, 625
Bsu15I	ATCGAT	1 cut(s)	354
BsuTUI	ATCGAT	1 cut(s)	354
BtsIMutI	CAGTG	2 cut(s)	48, 81
Cac8I	GCNNGC	2 cut(s)	131, 192
CaiI	CAGNNNCTG	1 cut(s)	257
CciI	TCATGA	1 cut(s)	632
CfoI	GCGC	1 cut(s)	81
ClaI	ATCGAT	1 cut(s)	354
Csp6I	GTAC	6 cut(s)	86, 260, 270, 335, 430, 575
CspCI	CAANNNNNGTGG	2 cut(s)	274, 309
CviAII	CATG	3 cut(s)	16, 546, 633
CviJI	RGCY	9 cut(s)	68, 133, 190, 206, 216, 322, 437, 494, 598
CviKI_1	RGCY	9 cut(s)	68, 133, 190, 206, 216, 322, 437, 494, 598
CviQI	GTAC	6 cut(s)	86, 260, 270, 335, 430, 575
DdeI	CTNAG	1 cut(s)	207
DpnI	GATC	3 cut(s)	43, 486, 627
DpnII	GATC	3 cut(s)	41, 484, 625
DraI	TTTAAA	1 cut(s)	409
Ecl136II	GAGCTC	1 cut(s)	322
Eco130I	CCWWGG	1 cut(s)	288
Eco24I	GRGCYC	1 cut(s)	324
Eco53kI	GAGCTC	1 cut(s)	322
Eco57I	CTGAAG	2 cut(s)	110, 161
Eco88I	CYCGRG	1 cut(s)	233
EcoICRI	GAGCTC	1 cut(s)	322
EcoT14I	CCWWGG	1 cut(s)	288
EcoT38I	GRGCYC	1 cut(s)	324
ErhI	CCWWGG	1 cut(s)	288
Esp3I	CGTCTC	1 cut(s)	177
FaeI	CATG	3 cut(s)	19, 549, 636
FaiI	YATR	7 cut(s)	17, 434, 461, 547, 571, 573, 634
FatI	CATG	3 cut(s)	15, 545, 632
Fnu4HI	GCNGC	3 cut(s)	5, 492, 495
FriOI	GRGCYC	1 cut(s)	324
Fsp4HI	GCNGC	3 cut(s)	5, 492, 495
FspI	TGCGCA	1 cut(s)	80
GlaI	GCGC	1 cut(s)	80
GluI	GCNGC	3 cut(s)	5, 492, 495
HhaI	GCGC	1 cut(s)	81
Hin1II	CATG	3 cut(s)	19, 549, 636
Hin6I	GCGC	1 cut(s)	79
HinP1I	GCGC	1 cut(s)	79
Hpy166II	GTNNAC	2 cut(s)	109, 348
Hpy188I	TCNGA	1 cut(s)	306
Hpy188III	TCNNGA	2 cut(s)	158, 633
Hpy8I	GTNNAC	2 cut(s)	109, 348
HpyAV	CCTTC	4 cut(s)	85, 283, 310, 535
HpyCH4III	ACNGT	3 cut(s)	33, 85, 259
HpyCH4IV	ACGT	2 cut(s)	337, 577
HpyCH4V	TGCA	2 cut(s)	279, 491
HpyF3I	CTNAG	1 cut(s)	207
HpySE526I	ACGT	2 cut(s)	337, 577
Hsp92II	CATG	3 cut(s)	19, 549, 636
HspAI	GCGC	1 cut(s)	79
Kzo9I	GATC	3 cut(s)	41, 484, 625
LmnI	GCTCC	1 cut(s)	319
LpnPI	CCDG	9 cut(s)	36, 107, 143, 152, 160, 264, 317, 501, 608
Lsp1109I	GCAGC	2 cut(s)	481, 503
MaeII	ACGT	2 cut(s)	337, 577
MaeIII	GTNAC	2 cut(s)	253, 590
MalI	GATC	3 cut(s)	43, 486, 627
MboI	GATC	3 cut(s)	41, 484, 625
MboII	GAAGA	3 cut(s)	154, 376, 530
MflI	RGATCY	2 cut(s)	41, 625
MhlI	GDGCHC	1 cut(s)	324
MluCI	AATT	5 cut(s)	396, 439, 465, 532, 586
MmeI	TCCRAC	2 cut(s)	160, 395
MnlI	CCTC	2 cut(s)	291, 502
MseI	TTAA	4 cut(s)	27, 374, 392, 408
MspA1I	CMGCKG	1 cut(s)	494
NdeII	GATC	3 cut(s)	41, 484, 625
NlaIII	CATG	3 cut(s)	19, 549, 636
NsbI	TGCGCA	1 cut(s)	80
NspI	RCATGY	1 cut(s)	19
PagI	TCATGA	1 cut(s)	632
PcsI	WCGNNNNNNNCGW	1 cut(s)	334
PkrI	GCNGC	3 cut(s)	6, 493, 496
Ppu21I	YACGTR	1 cut(s)	338
Psp124BI	GAGCTC	1 cut(s)	324
PstI	CTGCAG	1 cut(s)	493
PstNI	CAGNNNCTG	1 cut(s)	257
PsuI	RGATCY	2 cut(s)	41, 625
PvuII	CAGCTG	1 cut(s)	494
RsaI	GTAC	6 cut(s)	87, 261, 271, 336, 431, 576
RsaNI	GTAC	6 cut(s)	86, 260, 270, 335, 430, 575
SacI	GAGCTC	1 cut(s)	324
SaqAI	TTAA	4 cut(s)	27, 374, 392, 408
SatI	GCNGC	3 cut(s)	5, 492, 495
Sau3AI	GATC	3 cut(s)	41, 484, 625
SduI	GDGCHC	1 cut(s)	324
SfcI	CTRYAG	1 cut(s)	489
SmlI	CTYRAG	2 cut(s)	20, 506
SmoI	CTYRAG	2 cut(s)	20, 506
Sse9I	AATT	5 cut(s)	396, 439, 465, 532, 586
SstI	GAGCTC	1 cut(s)	324
StyI	CCWWGG	1 cut(s)	288
TaaI	ACNGT	3 cut(s)	33, 85, 259
TaiI	ACGT	2 cut(s)	340, 580
TaqI	TCGA	2 cut(s)	212, 354
TasI	AATT	5 cut(s)	396, 439, 465, 532, 586
TatI	WGTACW	2 cut(s)	85, 429
Tru1I	TTAA	4 cut(s)	27, 374, 392, 408
Tru9I	TTAA	4 cut(s)	27, 374, 392, 408
TscAI	CASTG	2 cut(s)	55, 88
TseI	GCWGC	3 cut(s)	4, 491, 494
TspDTI	ATGAA	4 cut(s)	329, 374, 465, 621
TspGWI	ACGGA	1 cut(s)	518
TspRI	CASTG	2 cut(s)	55, 88
XceI	RCATGY	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.