pycom03g01830
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
N/A
Physical Location & Seq
Reverse (-)
1331681 .. 1332123
443 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 402 bp
ATGTCTACCAACCTTAGCCACACAGTGACAAACAGACGAACACCAAATACTACTGGAGACGCATATGTAGAGAATACATGGCCACATTGGTCTAATAAGAATTTCAAAAATACTCCTTCCATCATAAGAAAGAAAAGCTCCAAAAGGACTAATCCTAATAAATGCCCTGATGTCAGTAGCTCAAATGCATGCTCCACATTGAACTTTGCAAATGAGAAGTTTGGTTCATTTTCTTTCCGTCAGAGGCCTCAAAATTCAGCGGTTATTAAATCTCTGGGATGGTGCCCAGAATGTGAATTCAATGCAGAAAATGATTTGGCCATGTATTCTCTGCATATGCTTCTCCAGATGTCAATGTTGGTGCATAACCTGTTTTTCATCCAGGTCTCTAGATGTCGATGA

Protein Analysis

134

Amino Acids

15.24

Weight (kDa)

9.62

Isoelectric Point (pI)

42.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 282
AccI GTMKAC 1 cut(s) 5
AciI CCGC 1 cut(s) 260
AcoI YGGCCR 2 cut(s) 80, 318
AcsI RAATTY 3 cut(s) 100, 253, 296
AdeI CACNNNGTG 1 cut(s) 25
AgsI TTSAA 3 cut(s) 106, 202, 301
AjnI CCWGG 1 cut(s) 381
AluBI AGCT 2 cut(s) 138, 180
AluI AGCT 2 cut(s) 138, 180
Alw26I GTCTC 2 cut(s) 51, 391
AoxI GGCC 3 cut(s) 80, 245, 318
ApoI RAATTY 3 cut(s) 100, 253, 296
BaeGI GKGCMC 1 cut(s) 287
BalI TGGCCA 2 cut(s) 82, 320
BanI GGYRCC 1 cut(s) 282
BccI CCATC 2 cut(s) 128, 273
BciT130I CCWGG 1 cut(s) 383
BcoDI GTCTC 2 cut(s) 51, 391
BfaI CTAG 1 cut(s) 390
Bme1390I CCNGG 1 cut(s) 383
BmiI GGNNCC 1 cut(s) 284
BmrFI CCNGG 1 cut(s) 383
BpmI CTGGAG 2 cut(s) 75, 329
Bpu10I CCTNAGC 1 cut(s) 14
BsaI GGTCTC 1 cut(s) 391
Bse1I ACTGG 1 cut(s) 58
BseBI CCWGG 1 cut(s) 383
BseGI GGATG 2 cut(s) 284, 378
BseNI ACTGG 1 cut(s) 58
BseSI GKGCMC 1 cut(s) 287
BshFI GGCC 3 cut(s) 82, 247, 320
BshNI GGYRCC 1 cut(s) 282
BsmAI GTCTC 2 cut(s) 51, 391
BsmBI CGTCTC 1 cut(s) 51
BsnI GGCC 3 cut(s) 82, 247, 320
Bso31I GGTCTC 1 cut(s) 391
Bsp1286I GDGCHC 1 cut(s) 287
BspACI CCGC 1 cut(s) 260
BspANI GGCC 3 cut(s) 82, 247, 320
BspLI GGNNCC 1 cut(s) 284
BspT107I GGYRCC 1 cut(s) 282
BspTNI GGTCTC 1 cut(s) 391
BsrI ACTGG 1 cut(s) 58
Bst2UI CCWGG 1 cut(s) 383
Bst4CI ACNGT 1 cut(s) 25
BstC8I GCNNGC 1 cut(s) 190
BstDEI CTNAG 1 cut(s) 14
BstF5I GGATG 2 cut(s) 284, 378
BstMAI GTCTC 2 cut(s) 51, 391
BstNI CCWGG 1 cut(s) 383
BstNSI RCATGY 1 cut(s) 192
BstSCI CCNGG 1 cut(s) 381
BstSLI GKGCMC 1 cut(s) 287
BsuRI GGCC 3 cut(s) 82, 247, 320
BtsCI GGATG 2 cut(s) 284, 378
BtsIMutI CAGTG 1 cut(s) 30
Cac8I GCNNGC 1 cut(s) 190
CseI GACGC 1 cut(s) 68
CviAII CATG 3 cut(s) 78, 189, 322
CviJI RGCY 6 cut(s) 18, 82, 138, 180, 247, 320
CviKI_1 RGCY 6 cut(s) 18, 82, 138, 180, 247, 320
DdeI CTNAG 1 cut(s) 14
DraIII CACNNNGTG 1 cut(s) 25
EaeI YGGCCR 2 cut(s) 80, 318
Eco147I AGGCCT 1 cut(s) 247
Eco31I GGTCTC 1 cut(s) 391
EcoRI GAATTC 1 cut(s) 296
EcoRII CCWGG 1 cut(s) 381
EcoT22I ATGCAT 1 cut(s) 190
Esp3I CGTCTC 1 cut(s) 51
FaeI CATG 3 cut(s) 81, 192, 325
FaiI YATR 9 cut(s) 64, 66, 79, 125, 190, 323, 336, 338, 366
FatI CATG 3 cut(s) 77, 188, 321
FauNDI CATATG 2 cut(s) 64, 336
FblI GTMKAC 1 cut(s) 5
FokI GGATG 2 cut(s) 291, 365
FspBI CTAG 1 cut(s) 390
GsuI CTGGAG 2 cut(s) 75, 329
HaeIII GGCC 3 cut(s) 82, 247, 320
HgaI GACGC 1 cut(s) 68
Hin1II CATG 3 cut(s) 81, 192, 325
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 1 cut(s) 243
Hpy188III TCNNGA 2 cut(s) 346, 390
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 1 cut(s) 126
HpyCH4III ACNGT 1 cut(s) 25
HpyCH4V TGCA 5 cut(s) 188, 209, 305, 334, 364
HpyF3I CTNAG 1 cut(s) 14
Hsp92II CATG 3 cut(s) 81, 192, 325
LmnI GCTCC 2 cut(s) 143, 197
LpnPI CCDG 8 cut(s) 39, 180, 260, 300, 359, 368, 383, 395
MaeI CTAG 1 cut(s) 390
MaeIII GTNAC 1 cut(s) 25
MhlI GDGCHC 1 cut(s) 287
MlsI TGGCCA 2 cut(s) 82, 320
MluCI AATT 3 cut(s) 100, 253, 296
MluNI TGGCCA 2 cut(s) 82, 320
MnlI CCTC 2 cut(s) 237, 258
Mox20I TGGCCA 2 cut(s) 82, 320
Mph1103I ATGCAT 1 cut(s) 190
MscI TGGCCA 2 cut(s) 82, 320
MseI TTAA 1 cut(s) 267
Msp20I TGGCCA 2 cut(s) 82, 320
MspA1I CMGCKG 1 cut(s) 260
MspR9I CCNGG 1 cut(s) 383
MvaI CCWGG 1 cut(s) 383
NdeI CATATG 2 cut(s) 64, 336
NlaIII CATG 3 cut(s) 81, 192, 325
NlaIV GGNNCC 1 cut(s) 284
NmuCI GTSAC 1 cut(s) 25
NsiI ATGCAT 1 cut(s) 190
NspI RCATGY 1 cut(s) 192
PaeI GCATGC 1 cut(s) 192
PceI AGGCCT 1 cut(s) 247
Psp6I CCWGG 1 cut(s) 381
PspGI CCWGG 1 cut(s) 381
PspN4I GGNNCC 1 cut(s) 284
PsrI GAACNNNNNNTAC 2 cut(s) 31, 63
SaqAI TTAA 1 cut(s) 267
ScrFI CCNGG 1 cut(s) 383
SduI GDGCHC 1 cut(s) 287
SetI ASST 5 cut(s) 15, 140, 182, 372, 387
SphI GCATGC 1 cut(s) 192
Sse9I AATT 3 cut(s) 100, 253, 296
SseBI AGGCCT 1 cut(s) 247
SsiI CCGC 1 cut(s) 260
SspMI CTAG 1 cut(s) 390
StuI AGGCCT 1 cut(s) 247
StyD4I CCNGG 1 cut(s) 381
TaaI ACNGT 1 cut(s) 25
TaqI TCGA 1 cut(s) 397
TasI AATT 3 cut(s) 100, 253, 296
Tru1I TTAA 1 cut(s) 267
Tru9I TTAA 1 cut(s) 267
TscAI CASTG 1 cut(s) 30
TseFI GTSAC 1 cut(s) 25
Tsp45I GTSAC 1 cut(s) 25
TspDTI ATGAA 2 cut(s) 216, 367
TspGWI ACGGA 1 cut(s) 227
TspRI CASTG 1 cut(s) 30
XapI RAATTY 3 cut(s) 100, 253, 296
XbaI TCTAGA 1 cut(s) 389
XceI RCATGY 1 cut(s) 192
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 1 cut(s) 390
Zsp2I ATGCAT 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.