pycom03g01950

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
N/A
Physical Location & Seq
Forward (+)
1472554 .. 1472954
401 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 297 bp
ATGCTGATGGTGTATGCTTCAGGAGTTATTACATATTCAGATTCTGCTCATAATTTTCTACAGCATGAGGCATCATTACCCTGCAAGACTACCCATGTGAATTTCTTGAACAAAATCTCAATTTGTATTAACCCAATTGGAGCTCCTTGTAACTCTACACCCTCTGCTTCTTACTTTTCGTGGAGAAGTCGAAATCAGCTAAACAGCCCCAAGAAATGGCTGTGCCGGATGCAGGATTCGATTCCATCAGACGATGAGTATCGATCGATCGCGCAACATAGCTATCAGTTTATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

11.16

Weight (kDa)

8.41

Isoelectric Point (pI)

39.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 216
AccII CGCG 1 cut(s) 272
AcsI RAATTY 1 cut(s) 100
AfiI CCNNNNNNNGG 2 cut(s) 216, 232
AgsI TTSAA 1 cut(s) 109
AluBI AGCT 3 cut(s) 143, 199, 282
AluI AGCT 3 cut(s) 143, 199, 282
Alw21I GWGCWC 1 cut(s) 145
AlwNI CAGNNNCTG 1 cut(s) 44
ApoI RAATTY 1 cut(s) 100
AspLEI GCGC 1 cut(s) 274
BanII GRGCYC 1 cut(s) 145
Bbv12I GWGCWC 1 cut(s) 145
BccI CCATC 1 cut(s) 253
BfmI CTRYAG 1 cut(s) 59
BmsI GCATC 2 cut(s) 80, 219
Bsa29I ATCGAT 2 cut(s) 262, 266
BsaBI GATNNNNATC 1 cut(s) 258
Bsc4I CCNNNNNNNGG 2 cut(s) 216, 232
Bse8I GATNNNNATC 1 cut(s) 258
BseCI ATCGAT 2 cut(s) 262, 266
BseGI GGATG 1 cut(s) 234
BseJI GATNNNNATC 1 cut(s) 258
BseLI CCNNNNNNNGG 2 cut(s) 216, 232
Bsh1236I CGCG 1 cut(s) 272
Bsh1285I CGRYCG 2 cut(s) 266, 270
BshVI ATCGAT 2 cut(s) 262, 266
BsiEI CGRYCG 2 cut(s) 266, 270
BsiHKAI GWGCWC 1 cut(s) 145
BsiSI CCGG 1 cut(s) 226
BslI CCNNNNNNNGG 2 cut(s) 216, 232
Bsp1286I GDGCHC 1 cut(s) 145
Bsp143I GATC 2 cut(s) 263, 267
BspDI ATCGAT 2 cut(s) 262, 266
BspFNI CGCG 1 cut(s) 272
BssMI GATC 2 cut(s) 263, 267
BstF5I GGATG 1 cut(s) 234
BstFNI CGCG 1 cut(s) 272
BstHHI GCGC 1 cut(s) 274
BstKTI GATC 2 cut(s) 266, 270
BstMBI GATC 2 cut(s) 263, 267
BstMCI CGRYCG 2 cut(s) 266, 270
BstSFI CTRYAG 1 cut(s) 59
BstUI CGCG 1 cut(s) 272
Bsu15I ATCGAT 2 cut(s) 262, 266
BsuTUI ATCGAT 2 cut(s) 262, 266
BtsCI GGATG 1 cut(s) 234
CaiI CAGNNNCTG 1 cut(s) 44
CfoI GCGC 1 cut(s) 274
ClaI ATCGAT 2 cut(s) 262, 266
CviAII CATG 2 cut(s) 65, 95
CviJI RGCY 5 cut(s) 143, 199, 207, 220, 282
CviKI_1 RGCY 5 cut(s) 143, 199, 207, 220, 282
DpnI GATC 2 cut(s) 265, 269
DpnII GATC 2 cut(s) 263, 267
Ecl136II GAGCTC 1 cut(s) 143
Eco24I GRGCYC 1 cut(s) 145
Eco53kI GAGCTC 1 cut(s) 143
EcoICRI GAGCTC 1 cut(s) 143
EcoT38I GRGCYC 1 cut(s) 145
FaeI CATG 2 cut(s) 68, 98
FaiI YATR 6 cut(s) 15, 34, 51, 66, 96, 279
FatI CATG 2 cut(s) 64, 94
FokI GGATG 1 cut(s) 241
FriOI GRGCYC 1 cut(s) 145
GlaI GCGC 1 cut(s) 273
HapII CCGG 1 cut(s) 226
HhaI GCGC 1 cut(s) 274
Hin1II CATG 2 cut(s) 68, 98
Hin6I GCGC 1 cut(s) 272
HinP1I GCGC 1 cut(s) 272
HinfI GANTC 3 cut(s) 41, 236, 241
HpaII CCGG 1 cut(s) 226
Hpy188I TCNGA 2 cut(s) 40, 250
Hpy188III TCNNGA 2 cut(s) 21, 106
HpyCH4V TGCA 2 cut(s) 84, 232
Hsp92II CATG 2 cut(s) 68, 98
HspAI GCGC 1 cut(s) 272
Kzo9I GATC 2 cut(s) 263, 267
LmnI GCTCC 2 cut(s) 140, 148
LpnPI CCDG 4 cut(s) 6, 94, 218, 239
LweI GCATC 2 cut(s) 80, 219
MaeIII GTNAC 1 cut(s) 149
MalI GATC 2 cut(s) 265, 269
MboI GATC 2 cut(s) 263, 267
MfeI CAATTG 1 cut(s) 135
MhlI GDGCHC 1 cut(s) 145
MluCI AATT 4 cut(s) 52, 100, 120, 135
MnlI CCTC 2 cut(s) 61, 172
MseI TTAA 1 cut(s) 129
MspI CCGG 1 cut(s) 226
MunI CAATTG 1 cut(s) 135
MvnI CGCG 1 cut(s) 272
NdeII GATC 2 cut(s) 263, 267
NlaIII CATG 2 cut(s) 68, 98
PfeI GAWTC 3 cut(s) 41, 236, 241
PflMI CCANNNNNTGG 1 cut(s) 216
Ple19I CGATCG 2 cut(s) 266, 270
Psp124BI GAGCTC 1 cut(s) 145
PstNI CAGNNNCTG 1 cut(s) 44
PvuI CGATCG 2 cut(s) 266, 270
SacI GAGCTC 1 cut(s) 145
SaqAI TTAA 1 cut(s) 129
Sau3AI GATC 2 cut(s) 263, 267
SduI GDGCHC 1 cut(s) 145
SetI ASST 3 cut(s) 145, 201, 284
SfaNI GCATC 2 cut(s) 80, 219
SfcI CTRYAG 1 cut(s) 59
Sse9I AATT 4 cut(s) 52, 100, 120, 135
SstI GAGCTC 1 cut(s) 145
TaqI TCGA 4 cut(s) 190, 239, 262, 266
TasI AATT 4 cut(s) 52, 100, 120, 135
TfiI GAWTC 3 cut(s) 41, 236, 241
Tru1I TTAA 1 cut(s) 129
Tru9I TTAA 1 cut(s) 129
Van91I CCANNNNNTGG 1 cut(s) 216
XapI RAATTY 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.